Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018288.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2249

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018288.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 775 bp

cggcccagacaccaacaaagtcctcgacttcctcatcgccctcccgtcccgatacccacgtcagaaacacgtcttcatcgcgggaaaccacgacttcgcctttgccggcttcttgagagtcctgcctccgccggcggacgggtccgagttccgggaggggtggaaggagttcgaggaccgtgaggagagagaagggtggtttaagggcgaggggtacgagggaatgcacttgcaggggaggagatgggctgggactaccaaggggtttaacaaggctaaagggactgagtaccagggttccgtttataaagctgggcccacttttgagtcttacggagtgcctcatggctctgccgatctggtgaaggtagttcctgatgatcataagaagtttcttgccgatatggtttgggtgcatgaagaggatgatgtctgtgtagagattgagggtgaaaccaaacactgtaaattgattgcggtgcacgccggtttggagcaagataaagatgtcaaacaacagttggagtttctgaaagccagagatactcgggtacctaagataaaggctctgagtggcaggaaagacgtgtggaatataccagaggaactgaaaaagactcaaactgttattgtaagtggacatcatgggaaacttcatattgaaggcttaaggctgatcattgatgaaggcgatggtatggcaaagaacccagtggctgcaattttactcccctctatgaaaataatccgtgatacagacgttttggcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

257

Amino Acids

28.88

Weight (kDa)

6.29

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	307
Acc65I	GGTACC	1 cut(s)	551
AccB1I	GGYRCC	1 cut(s)	551
AccII	CGCG	1 cut(s)	81
AciI	CCGC	4 cut(s)	81, 129, 135, 477
AfaI	GTAC	3 cut(s)	216, 291, 553
AfiI	CCNNNNNNNGG	2 cut(s)	138, 151
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	2 cut(s)	68, 586
AgsI	TTSAA	1 cut(s)	663
AjiI	CACGTC	3 cut(s)	60, 71, 587
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw21I	GWGCWC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	480
AlwNI	CAGNNNCTG	1 cut(s)	717
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	2 cut(s)	2, 315
ApaI	GGGCCC	1 cut(s)	319
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	1 cut(s)	717
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
Asp700I	GAANNNNTTC	1 cut(s)	168
Asp718I	GGTACC	1 cut(s)	551
AspS9I	GGNCC	5 cut(s)	3, 142, 176, 315, 316
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	374, 462
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	2 cut(s)	142, 176
BaeGI	GKGCMC	2 cut(s)	319, 484
BaeI	ACNNNNGTAYC	7 cut(s)	44, 77, 535, 535, 568, 568, 745
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	2 cut(s)	238, 687
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	2 cut(s)	380, 676
BcnI	CCSGG	1 cut(s)	153
BfaI	CTAG	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	668
BisI	GCNGC	1 cut(s)	718
BlsI	GCNGC	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	153, 294
Bme18I	GGWCC	2 cut(s)	142, 176
BmeT110I	CYCGRG	1 cut(s)	547
BmgBI	CACGTC	3 cut(s)	60, 71, 587
BmgT120I	GGNCC	5 cut(s)	3, 142, 176, 315, 316
BmiI	GGNNCC	4 cut(s)	143, 299, 317, 553
BmrFI	CCNGG	2 cut(s)	153, 294
BmrI	ACTGGG	1 cut(s)	705
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	259, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 151
Bse118I	RCCGGY	3 cut(s)	105, 131, 486
Bse1I	ACTGG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	2 cut(s)	259, 293
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	2 cut(s)	138, 151
BseMII	CTCAG	2 cut(s)	277, 561
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	2 cut(s)	198, 254
BseSI	GKGCMC	2 cut(s)	319, 484
BseXI	GCAGC	1 cut(s)	704
BseYI	CCCAGC	2 cut(s)	249, 312
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	4, 317
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	4 cut(s)	106, 132, 152, 487
BslFI	GGGAC	3 cut(s)	32, 266, 296
BslI	CCNNNNNNNGG	2 cut(s)	138, 151
BsmFI	GGGAC	3 cut(s)	32, 266, 296
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	4, 317
BsoBI	CYCGRG	1 cut(s)	547
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	319, 484
Bsp143I	GATC	3 cut(s)	356, 380, 676
BspACI	CCGC	4 cut(s)	81, 129, 135, 477
BspANI	GGCC	2 cut(s)	4, 317
BspCNI	CTCAG	2 cut(s)	278, 562
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	4 cut(s)	143, 299, 317, 553
BspT107I	GGYRCC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	668
BsrFI	RCCGGY	3 cut(s)	105, 131, 486
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	3 cut(s)	105, 131, 486
BssECI	CCNNGG	2 cut(s)	259, 293
BssMI	GATC	3 cut(s)	356, 380, 676
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	4 cut(s)	180, 465, 520, 626
Bst6I	CTCTTC	1 cut(s)	415
BstAFI	CTTAAG	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	107, 133, 484
BstDEI	CTNAG	3 cut(s)	286, 556, 570
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	1 cut(s)	81
BstKTI	GATC	3 cut(s)	359, 383, 679
BstMBI	GATC	3 cut(s)	356, 380, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	151, 292
BstSLI	GKGCMC	2 cut(s)	319, 484
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	4, 317
BtgZI	GCGATG	3 cut(s)	20, 62, 706
BtrI	CACGTC	3 cut(s)	60, 71, 587
BtsCI	GGATG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	461, 718
Cac8I	GCNNGC	3 cut(s)	107, 133, 484
CaiI	CAGNNNCTG	1 cut(s)	717
Cfr10I	RCCGGY	3 cut(s)	105, 131, 486
Cfr13I	GGNCC	5 cut(s)	3, 142, 176, 315, 316
Csp6I	GTAC	3 cut(s)	215, 290, 552
CviAII	CATG	3 cut(s)	345, 417, 645
CviQI	GTAC	3 cut(s)	215, 290, 552
DdeI	CTNAG	3 cut(s)	286, 556, 570
DpnI	GATC	3 cut(s)	358, 382, 678
DpnII	GATC	3 cut(s)	356, 380, 676
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
EciI	GGCGGA	2 cut(s)	118, 150
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	142, 176
Eco88I	CYCGRG	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	348, 420, 648
FaqI	GGGAC	3 cut(s)	32, 266, 296
FatI	CATG	3 cut(s)	344, 416, 644
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	2 cut(s)	380, 676
Fnu4HI	GCNGC	1 cut(s)	718
FokI	GGATG	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	718
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	1 cut(s)	718
GsaI	CCCAGC	2 cut(s)	253, 316
HaeIII	GGCC	2 cut(s)	4, 317
HapII	CCGG	4 cut(s)	106, 132, 152, 487
Hin1II	CATG	3 cut(s)	348, 420, 648
HinfI	GANTC	3 cut(s)	118, 327, 617
HpaII	CCGG	4 cut(s)	106, 132, 152, 487
HphI	GGTGA	2 cut(s)	374, 462
Hpy166II	GTNNAC	2 cut(s)	482, 639
Hpy188I	TCNGA	4 cut(s)	64, 146, 532, 571
Hpy188III	TCNNGA	3 cut(s)	49, 113, 375
Hpy8I	GTNNAC	2 cut(s)	482, 639
HpyAV	CCTTC	5 cut(s)	158, 186, 359, 657, 681
HpyCH4III	ACNGT	4 cut(s)	180, 465, 520, 626
HpyCH4IV	ACGT	4 cut(s)	59, 70, 586, 760
HpyCH4V	TGCA	5 cut(s)	227, 233, 416, 482, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	3 cut(s)	286, 556, 570
HpySE526I	ACGT	4 cut(s)	59, 70, 586, 760
Hsp92II	CATG	3 cut(s)	348, 420, 648
KpnI	GGTACC	1 cut(s)	555
KroI	GCCGGC	2 cut(s)	105, 131
KroNI	GCCGGC	2 cut(s)	107, 133
Ksp22I	TGATCA	2 cut(s)	380, 676
Kzo9I	GATC	3 cut(s)	356, 380, 676
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	704
MaeI	CTAG	1 cut(s)	773
MaeII	ACGT	4 cut(s)	59, 70, 586, 760
MalI	GATC	3 cut(s)	358, 382, 678
MboI	GATC	3 cut(s)	356, 380, 676
MboII	GAAGA	2 cut(s)	65, 432
MhlI	GDGCHC	2 cut(s)	319, 484
MluCI	AATT	2 cut(s)	468, 721
MlyI	GAGTC	3 cut(s)	127, 336, 611
MmeI	TCCRAC	1 cut(s)	502
MreI	CGCCGGCG	1 cut(s)	131
MroNI	GCCGGC	2 cut(s)	105, 131
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	202, 268, 669
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	4 cut(s)	106, 132, 152, 487
MspR9I	CCNGG	2 cut(s)	153, 294
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	483
NaeI	GCCGGC	2 cut(s)	107, 133
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	356, 380, 676
NgoMIV	GCCGGC	2 cut(s)	105, 131
NlaIII	CATG	3 cut(s)	348, 420, 648
NlaIV	GGNNCC	4 cut(s)	143, 299, 317, 553
PctI	GAATGC	1 cut(s)	229
PdiI	GCCGGC	2 cut(s)	107, 133
PdmI	GAANNNNTTC	1 cut(s)	168
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	719
PleI	GAGTC	3 cut(s)	126, 335, 611
PpsI	GAGTC	3 cut(s)	126, 335, 611
PsiI	TTATAA	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	292
PspFI	CCCAGC	2 cut(s)	249, 312
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	143, 299, 317, 553
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	5 cut(s)	3, 142, 176, 315, 316
PstNI	CAGNNNCTG	1 cut(s)	717
RsaI	GTAC	3 cut(s)	216, 291, 553
RsaNI	GTAC	3 cut(s)	215, 290, 552
SaqAI	TTAA	3 cut(s)	202, 268, 669
SatI	GCNGC	1 cut(s)	718
Sau3AI	GATC	3 cut(s)	356, 380, 676
Sau96I	GGNCC	5 cut(s)	3, 142, 176, 315, 316
SchI	GAGTC	3 cut(s)	127, 336, 611
ScrFI	CCNGG	2 cut(s)	153, 294
SduI	GDGCHC	2 cut(s)	319, 484
SetI	ASST	7 cut(s)	62, 73, 314, 370, 557, 589, 763
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	142, 176
SmlI	CTYRAG	2 cut(s)	113, 668
SmoI	CTYRAG	2 cut(s)	113, 668
Sse9I	AATT	2 cut(s)	468, 721
SsiI	CCGC	4 cut(s)	81, 129, 135, 477
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	2 cut(s)	151, 292
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	180, 465, 520, 626
TaiI	ACGT	4 cut(s)	62, 73, 589, 763
TaqI	TCGA	2 cut(s)	25, 172
TasI	AATT	2 cut(s)	468, 721
Tru1I	TTAA	3 cut(s)	202, 268, 669
Tru9I	TTAA	3 cut(s)	202, 268, 669
TscAI	CASTG	2 cut(s)	468, 718
TseI	GCWGC	1 cut(s)	717
TspDTI	ATGAA	5 cut(s)	65, 433, 645, 700, 753
TspGWI	ACGGA	3 cut(s)	290, 349, 738
TspRI	CASTG	2 cut(s)	468, 718
Vha464I	CTTAAG	1 cut(s)	668
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	2 cut(s)	142, 176
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.