FvH4_6g32620

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001026
Physical Location & Seq
Reverse (-)
25651068 .. 25658760
7693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32620.t1

Sequence Viewer

Length: 1854 bp
ATGCAAGTTTCAGACATGAGAGCTCTCAGAGCCATCTACACCCACCAACGCCTCCTCAAACCCAAATCCCTCCCAAACCCATCTCTCATTTCCTTCAAAGACTTCACCTTTTCCCGCCATTTCCACTCCTCCACCCAACTCCACCGCCCCGAACCACCCAACTCCACCGCCGGCGAAGAGTCCCGCCCCTTGTGGTCCGTCCTCTCCCCCGCACGGAAAGCTTCGATAAGAAGCGATGGGGGAGAATCAGGGAGCGAAGACGAGATGGGTCAGTCGAGCTTGGTGAATGGGGTGAGTGAGATTGAGAAGGGTAAGGGTGATAGGAGCGTTGGAAAGGTCAAATCAGGAAGTGGGTCGGTTAGTGGTGGATTGAAAAATGGGAAGGGGAAGGTGAAGACGAGTTGGGTTTGCTCAGATTGTGGGGAGACACATGGGCAGTGGATGGGGAAGTGCAGGAGTTGCTTCAAGTTCAACACTTTGAAGAGGTTTTCGGAGAGAAATGATGATGGTAAGGTTAGTGGGATTGGGGTTTCGGAGAAGGTGAGGTCTTGGTTGCCGAGAGGGGAGGCTCAGCCGGTGCGGTTGACTGATGTGAACCGGGGGATTAGTTGGAAGGATCGGCGGATTCCATTGCATGGAACCTTTGGAAGTGAAGTTGGGACGGTGCTTGGTGGTGGTATTGTGCCAGGTTCATTGATTTTTATTGGCGGTGATCCTGGTGTTGGAAAGAGTACACTTGTATTGCAGATTGCTGCACTTATAGCTGAAGGACATGAGCTTGGTAAAGCATCCAGCGTTGTATATGTCTCTGGTGAAGAGAGTATTGAGCAAATTGGGAGCAGAGCTGACCGTATGGGGATTGAAACAGACGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATAATCAGTAAAGTTCAGTCCATAGCTCCTCAGGCTCTAATTGTTGATTCCATTCAAACAGTTTACATTGAAGGAGCGGCCGGAAGTGCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGGCTTTTGCGAAGAGGACTAATATCCCTGTTTTTTTGATTGGGCATGTAAACAAATCTGGAGAGATTGCTGGACCTCGTGTTTTGGAGCATATTGTTGATGTTGTGTTATACATGGAAGGGGAGAAGCACTCATCCTACCGTTTACTTCGATCTGTGAAGAATCGTTTTGGATCCACTGATGAGCTTGGAGTATTTGAAATGTCACAATCAGGATTAGAAGCTGTTTCAAATCCCGGTGGGATGTTTCTAGGAGAACAGTTATCAGATTCAGAGTTTTTGGCCGGTATAGCTGTTGCTGTAGTAATGGATGGATCTCGAAGTTTTCTCATTGAGATTCAGGCATTATGTGTATCAGGTCAAGCAATTTTACAGCAAGTTAATGGAATTCAAGCTAGTAGAGCTTCCATGATTATTTCAGTGCTTGCGAAGCAAGCTGGTCTAAAGCTTCAAGAGAATGCGATCTTCTTGAATGTTGTTAGTGGGGTAACACTGAAAGAAACTGCTGGTGATCTTGCAATAGCCGCAGCAATTTGCAGCAGGCATGTATTGTTACTCTTTAACTGTATATGTTTCTTGGAGTCCCCTATACCCAATAGCACTGCATTCATTGGTGAAATTGGACTATGTGGTGAACTTCGCCCGGTTTCTGCTATGGATAAAAGGGTACATACATTGGCAAAACTGGGTTACAAGATGTGCATTGTACCAAAGTCAGCTGAAAAATCGCTACGAGGAACTCCAGGTTTTGAGAATATCGAAATCATAGGCTGCAAGAATCTGAAAGAGGTCATCAACAATGTGTTCAGATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

618

Amino Acids

66.07

Weight (kDa)

8.34

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_LapB PF18073 135 - 161 8.6e-06 Rubredoxin metal binding domain
AAA_25 PF13481 225 - 366 4.4e-18 AAA domain
ChlI PF13541 487 - 584 6.9e-07 Subunit ChlI of Mg-chelatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 983
AclWI GGATC 5 cut(s) 624, 707, 1203, 1216, 1357
AcoI YGGCCR 2 cut(s) 984, 1317
AcsI RAATTY 1 cut(s) 1422
AcuI CTGAAG 1 cut(s) 786
AfaI GTAC 5 cut(s) 733, 884, 892, 1704, 1743
AfiI CCNNNNNNNGG 3 cut(s) 213, 635, 722
AjiI CACGTC 1 cut(s) 1026
AjnI CCWGG 3 cut(s) 685, 715, 1777
AloI GAACNNNNNNTCC 2 cut(s) 990, 1022
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 2 cut(s) 419, 811
AlwI GGATC 5 cut(s) 624, 707, 1203, 1216, 1357
AoxI GGCC 2 cut(s) 984, 1317
ApeKI GCWGC 4 cut(s) 752, 1562, 1572, 1806
ApoI RAATTY 1 cut(s) 1422
AspS9I GGNCC 2 cut(s) 195, 1109
AsuC2I CCSGG 3 cut(s) 599, 1272, 1679
AvaII GGWCC 2 cut(s) 195, 1109
AxyI CCTNAGG 1 cut(s) 936
BamHI GGATCC 1 cut(s) 1208
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 1 cut(s) 1113
BbsI GAAGAC 2 cut(s) 264, 401
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 739, 1574, 1584, 1793
BccI CCATC 7 cut(s) 41, 88, 230, 259, 436, 500, 1340
BciT130I CCWGG 3 cut(s) 687, 717, 1779
BcnI CCSGG 3 cut(s) 599, 1272, 1679
BcoDI GTCTC 2 cut(s) 419, 811
BfaI CTAG 2 cut(s) 1286, 1431
BfmI CTRYAG 1 cut(s) 1335
BglI GCCNNNNNGGC 1 cut(s) 1037
BisI GCNGC 6 cut(s) 753, 984, 1560, 1563, 1573, 1807
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 6 cut(s) 754, 985, 1561, 1564, 1574, 1808
BmcAI AGTACT 1 cut(s) 892
Bme1390I CCNGG 6 cut(s) 599, 687, 717, 1272, 1679, 1779
Bme18I GGWCC 2 cut(s) 195, 1109
BmgBI CACGTC 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 195, 1109
BmiI GGNNCC 2 cut(s) 640, 1210
BmrFI CCNGG 6 cut(s) 599, 687, 717, 1272, 1679, 1779
BmrI ACTGGG 1 cut(s) 1730
BmsI GCATC 1 cut(s) 797
BmuI ACTGGG 1 cut(s) 1730
BpiI GAAGAC 2 cut(s) 264, 401
BplI GAGNNNNNCTC 2 cut(s) 1151, 1183
BpmI CTGGAG 3 cut(s) 1017, 1116, 1761
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 871
BpuMI CCSGG 3 cut(s) 599, 1272, 1679
BsaJI CCNNGG 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 635, 722
Bse118I RCCGGY 3 cut(s) 170, 574, 1319
Bse1I ACTGG 1 cut(s) 1725
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 629
BseBI CCWGG 3 cut(s) 687, 717, 1779
BseDI CCNNGG 1 cut(s) 598
BseGI GGATG 5 cut(s) 447, 788, 1169, 1284, 1351
BseLI CCNNNNNNNGG 3 cut(s) 213, 635, 722
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 4 cut(s) 40, 426, 584, 950
BseNI ACTGG 1 cut(s) 1725
BseRI GAGGAG 3 cut(s) 44, 118, 924
BseX3I CGGCCG 1 cut(s) 984
BseXI GCAGC 4 cut(s) 739, 1574, 1584, 1793
BsgI GTGCAG 2 cut(s) 472, 738
Bsh1285I CGRYCG 1 cut(s) 987
BshFI GGCC 2 cut(s) 986, 1319
BsiEI CGRYCG 1 cut(s) 987
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 7 cut(s) 171, 575, 598, 987, 1272, 1320, 1679
BslFI GGGAC 3 cut(s) 166, 673, 1603
BslI CCNNNNNNNGG 3 cut(s) 213, 635, 722
BsmAI GTCTC 2 cut(s) 419, 811
BsmFI GGGAC 3 cut(s) 166, 673, 1603
BsmI GAATGC 3 cut(s) 1025, 1498, 1640
BsnI GGCC 2 cut(s) 986, 1319
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
Bsp1720I GCTNAGC 1 cut(s) 570
BspANI GGCC 2 cut(s) 986, 1319
BspCNI CTCAG 4 cut(s) 39, 425, 583, 949
BspLI GGNNCC 2 cut(s) 640, 1210
BspPI GGATC 5 cut(s) 624, 707, 1203, 1216, 1357
BsrBI CCGCTC 1 cut(s) 983
BsrDI GCAATG 1 cut(s) 629
BsrFI RCCGGY 3 cut(s) 170, 574, 1319
BsrI ACTGG 1 cut(s) 1725
BssAI RCCGGY 3 cut(s) 170, 574, 1319
BssECI CCNNGG 1 cut(s) 598
BssMI GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
BssSI CACGAG 1 cut(s) 1113
Bst2BI CACGAG 1 cut(s) 1113
Bst2UI CCWGG 3 cut(s) 687, 717, 1779
Bst4CI ACNGT 6 cut(s) 664, 851, 967, 1178, 1296, 1601
Bst6I CTCTTC 4 cut(s) 171, 476, 810, 1043
BstAPI GCANNNNNTGC 1 cut(s) 459
BstC8I GCNNGC 5 cut(s) 172, 1038, 1461, 1470, 1577
BstDEI CTNAG 4 cut(s) 26, 412, 570, 936
BstF5I GGATG 5 cut(s) 447, 788, 1169, 1284, 1351
BstKTI GATC 9 cut(s) 619, 715, 874, 1190, 1211, 1352, 1500, 1549, 1847
BstMAI GTCTC 2 cut(s) 419, 811
BstMBI GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
BstMCI CGRYCG 1 cut(s) 987
BstNI CCWGG 3 cut(s) 687, 717, 1779
BstNSI RCATGY 2 cut(s) 1085, 1583
BstSCI CCNGG 6 cut(s) 597, 685, 715, 1270, 1677, 1777
BstSFI CTRYAG 1 cut(s) 1335
BstV1I GCAGC 4 cut(s) 739, 1574, 1584, 1793
BstV2I GAAGAC 2 cut(s) 264, 401
BstX2I RGATCY 2 cut(s) 1208, 1349
BstYI RGATCY 2 cut(s) 1208, 1349
BstZI CGGCCG 1 cut(s) 984
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 2 cut(s) 986, 1319
BtgZI GCGATG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 1026
BtsCI GGATG 5 cut(s) 447, 788, 1169, 1284, 1351
BtsI GCAGTG 2 cut(s) 443, 1635
BtsIMutI CAGTG 5 cut(s) 443, 1212, 1461, 1526, 1635
Cac8I GCNNGC 5 cut(s) 172, 1038, 1461, 1470, 1577
Cfr10I RCCGGY 3 cut(s) 170, 574, 1319
Cfr13I GGNCC 2 cut(s) 195, 1109
Csp6I GTAC 5 cut(s) 732, 883, 891, 1703, 1742
CviAII CATG 8 cut(s) 16, 431, 635, 773, 1082, 1150, 1444, 1580
CviQI GTAC 5 cut(s) 732, 883, 891, 1703, 1742
DdeI CTNAG 4 cut(s) 26, 412, 570, 936
DpnI GATC 9 cut(s) 618, 714, 873, 1189, 1210, 1351, 1499, 1548, 1846
DpnII GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
EaeI YGGCCR 2 cut(s) 984, 1317
EagI CGGCCG 1 cut(s) 984
Eam1104I CTCTTC 4 cut(s) 171, 476, 810, 1043
EarI CTCTTC 4 cut(s) 171, 476, 810, 1043
EciI GGCGGA 1 cut(s) 637
Ecl136II GAGCTC 1 cut(s) 23
EclXI CGGCCG 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 195, 1109
Eco52I CGGCCG 1 cut(s) 984
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 936
EcoICRI GAGCTC 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 1422
EcoRII CCWGG 3 cut(s) 685, 715, 1777
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 8 cut(s) 19, 434, 638, 776, 1085, 1153, 1447, 1583
FaqI GGGAC 3 cut(s) 166, 673, 1603
FatI CATG 8 cut(s) 15, 430, 634, 772, 1081, 1149, 1443, 1579
FauI CCCGC 3 cut(s) 122, 191, 217
Fnu4HI GCNGC 6 cut(s) 753, 984, 1560, 1563, 1573, 1807
FokI GGATG 5 cut(s) 454, 775, 1156, 1291, 1358
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 6 cut(s) 753, 984, 1560, 1563, 1573, 1807
FspBI CTAG 2 cut(s) 1286, 1431
GluI GCNGC 6 cut(s) 753, 984, 1560, 1563, 1573, 1807
GsuI CTGGAG 3 cut(s) 1017, 1116, 1761
HaeIII GGCC 2 cut(s) 986, 1319
HapII CCGG 7 cut(s) 171, 575, 598, 987, 1272, 1320, 1679
Hin1II CATG 8 cut(s) 19, 434, 638, 776, 1085, 1153, 1447, 1583
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HindIII AAGCTT 2 cut(s) 219, 1481
HinfI GANTC 9 cut(s) 179, 245, 625, 953, 1198, 1304, 1372, 1616, 1813
HpaII CCGG 7 cut(s) 171, 575, 598, 987, 1272, 1320, 1679
Hpy166II GTNNAC 7 cut(s) 585, 595, 734, 970, 1087, 1181, 1670
Hpy188I TCNGA 9 cut(s) 13, 29, 415, 493, 535, 1303, 1309, 1818, 1844
Hpy188III TCNNGA 6 cut(s) 345, 1095, 1248, 1353, 1487, 1504
Hpy8I GTNNAC 7 cut(s) 585, 595, 734, 970, 1087, 1181, 1670
HpyCH4III ACNGT 6 cut(s) 664, 851, 967, 1178, 1296, 1601
HpyCH4IV ACGT 1 cut(s) 1025
HpyF3I CTNAG 4 cut(s) 26, 412, 570, 936
HpySE526I ACGT 1 cut(s) 1025
Hsp92II CATG 8 cut(s) 19, 434, 638, 776, 1085, 1153, 1447, 1583
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
LmnI GCTCC 6 cut(s) 252, 324, 837, 937, 980, 1123
Lsp1109I GCAGC 4 cut(s) 739, 1574, 1584, 1793
LweI GCATC 1 cut(s) 797
MaeI CTAG 2 cut(s) 1286, 1431
MaeII ACGT 1 cut(s) 1025
MaeIII GTNAC 4 cut(s) 1239, 1522, 1587, 1724
MalI GATC 9 cut(s) 618, 714, 873, 1189, 1210, 1351, 1499, 1548, 1846
MbiI CCGCTC 1 cut(s) 983
MboI GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
MboII GAAGA 8 cut(s) 188, 269, 406, 493, 827, 1060, 1207, 1492
MflI RGATCY 2 cut(s) 1208, 1349
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 6 cut(s) 831, 945, 1401, 1422, 1566, 1653
MlyI GAGTC 2 cut(s) 188, 1625
MmeI TCCRAC 3 cut(s) 310, 590, 703
MreI CGCCGGCG 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 170
MseI TTAA 2 cut(s) 1416, 1596
MspA1I CMGCKG 1 cut(s) 1754
MspI CCGG 7 cut(s) 171, 575, 598, 987, 1272, 1320, 1679
MspR9I CCNGG 6 cut(s) 599, 687, 717, 1272, 1679, 1779
Mva1269I GAATGC 3 cut(s) 1025, 1498, 1640
MvaI CCWGG 3 cut(s) 687, 717, 1779
NaeI GCCGGC 1 cut(s) 172
NciI CCSGG 3 cut(s) 599, 1272, 1679
NdeII GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 8 cut(s) 19, 434, 638, 776, 1085, 1153, 1447, 1583
NlaIV GGNNCC 2 cut(s) 640, 1210
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 1239
NspI RCATGY 2 cut(s) 1085, 1583
PctI GAATGC 3 cut(s) 1025, 1498, 1640
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 7 cut(s) 245, 625, 953, 1198, 1304, 1372, 1813
PflMI CCANNNNNTGG 1 cut(s) 635
PkrI GCNGC 6 cut(s) 754, 985, 1561, 1564, 1574, 1808
PleI GAGTC 2 cut(s) 187, 1624
PpsI GAGTC 2 cut(s) 187, 1624
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 685, 715, 1777
PspGI CCWGG 3 cut(s) 685, 715, 1777
PspN4I GGNNCC 2 cut(s) 640, 1210
PspPI GGNCC 2 cut(s) 195, 1109
PsuI RGATCY 2 cut(s) 1208, 1349
PvuII CAGCTG 1 cut(s) 1754
RsaI GTAC 5 cut(s) 733, 884, 892, 1704, 1743
RsaNI GTAC 5 cut(s) 732, 883, 891, 1703, 1742
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 1416, 1596
SatI GCNGC 6 cut(s) 753, 984, 1560, 1563, 1573, 1807
Sau3AI GATC 9 cut(s) 616, 712, 871, 1187, 1208, 1349, 1497, 1546, 1844
Sau96I GGNCC 2 cut(s) 195, 1109
ScaI AGTACT 1 cut(s) 892
SchI GAGTC 2 cut(s) 188, 1625
ScrFI CCNGG 6 cut(s) 599, 687, 717, 1272, 1679, 1779
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 797
SfcI CTRYAG 1 cut(s) 1335
SgrAI CRCCGGYG 1 cut(s) 170
SinI GGWCC 2 cut(s) 195, 1109
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
Sse9I AATT 6 cut(s) 831, 945, 1401, 1422, 1566, 1653
SspMI CTAG 2 cut(s) 1286, 1431
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 6 cut(s) 597, 685, 715, 1270, 1677, 1777
TaaI ACNGT 6 cut(s) 664, 851, 967, 1178, 1296, 1601
TaiI ACGT 1 cut(s) 1028
TaqI TCGA 5 cut(s) 224, 275, 1186, 1354, 1794
TasI AATT 6 cut(s) 831, 945, 1401, 1422, 1566, 1653
TatI WGTACW 3 cut(s) 731, 882, 890
TauI GCSGC 2 cut(s) 986, 1562
TfiI GAWTC 7 cut(s) 245, 625, 953, 1198, 1304, 1372, 1813
Tru1I TTAA 2 cut(s) 1416, 1596
Tru9I TTAA 2 cut(s) 1416, 1596
TscAI CASTG 5 cut(s) 443, 1219, 1461, 1533, 1642
TseFI GTSAC 1 cut(s) 1239
TseI GCWGC 4 cut(s) 752, 1562, 1572, 1806
Tsp45I GTSAC 1 cut(s) 1239
TspDTI ATGAA 2 cut(s) 681, 1633
TspGWI ACGGA 2 cut(s) 187, 229
TspRI CASTG 5 cut(s) 443, 1219, 1461, 1533, 1642
Van91I CCANNNNNTGG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 195, 1109
XapI RAATTY 1 cut(s) 1422
XceI RCATGY 2 cut(s) 1085, 1583
XspI CTAG 2 cut(s) 1286, 1431
ZrmI AGTACT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.