Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Reverse (-)

56178987 .. 56191999

Gene Structure 13013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTCCGTCGAGTTTGGTCAATGTGGTCAGTGAGATCGAGAAAGGTACGGCTGACAGGAGCGTTGCCCGGGAAGGTGAGATCAGGAACCGGGCATGGAACATTGGAACCTTTGGAAGTGAAGTTGCGACGGTGCTTGGTGGTGGCATTGTACCAGGTGATATATTAGAGGAAAGTTGGTCTCAGGCTCCTCAGGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCCGGAAGTCCTGGAGGCATTGTTCAGATTGGGCATGTAACCAAATCTGGAGAGATTGCTGGAGCTCGTCTTTTGGAGCATATTGTTGATGTTGTGCTATACATAGAAGTTGGTAGTTTGGCATTATGTGTATCAGGTCTAGCAGTTGTACCTGTTGTTAATGGAATTCAAGCTAATAGAGCTTCCATCATTATTGCAGTTTCTGCAATGGATAAAAGGATAGATACAGTGGCAAAACTGGGTTACAAGACGCGCATTGTACCAAAGTCAGCTGAAAAATCTGTAAGAGGAACTCTAGGTTTCGAGGATATCAAAATTATAGGCTGCAAGAATCTGAAAGAGGTCATCAACATGGTGTTTAGATCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

203

Amino Acids

21.29

Weight (kDa)

7.79

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	493
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	4 cut(s)	49, 153, 390, 501
AgsI	TTSAA	2 cut(s)	218, 410
AjnI	CCWGG	2 cut(s)	154, 250
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	305, 413, 422, 512
AluI	AGCT	4 cut(s)	305, 413, 422, 512
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	564
ApoI	RAATTY	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	3 cut(s)	70, 71, 92
AsuHPI	GGTGA	2 cut(s)	89, 170
AvaI	CYCGRG	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	551
BccI	CCATC	1 cut(s)	434
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	156, 252
BcnI	CCSGG	3 cut(s)	70, 71, 92
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	380, 536
BisI	GCNGC	1 cut(s)	565
BlsI	GCNGC	1 cut(s)	566
Bme1390I	CCNGG	5 cut(s)	70, 71, 92, 156, 252
Bme18I	GGWCC	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	4 cut(s)	6, 89, 109, 189
BmrFI	CCNGG	5 cut(s)	70, 71, 92, 156, 252
BmrI	ACTGGG	1 cut(s)	488
BmuI	ACTGGG	1 cut(s)	488
BpmI	CTGGAG	3 cut(s)	273, 309, 321
BpuMI	CCSGG	3 cut(s)	70, 71, 92
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bse1I	ACTGG	1 cut(s)	483
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	156, 252
BseDI	CCNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	197, 206
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	3 cut(s)	70, 91, 243
BsmAI	GTCTC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	3 cut(s)	36, 81, 602
BspANI	GGCC	1 cut(s)	242
BspCNI	CTCAG	2 cut(s)	196, 205
BspFNI	CGCG	1 cut(s)	493
BspLI	GGNNCC	4 cut(s)	6, 89, 109, 189
BspTNI	GGTCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	36, 81, 602
Bst2UI	CCWGG	2 cut(s)	156, 252
Bst4CI	ACNGT	3 cut(s)	133, 223, 469
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	183, 192
BstFNI	CGCG	1 cut(s)	493
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	39, 84, 605
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	3 cut(s)	36, 81, 602
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 203, 419, 443
BstNI	CCWGG	2 cut(s)	156, 252
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	5 cut(s)	68, 69, 90, 154, 250
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	551
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	37, 474
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	5
Cfr9I	CCCGGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	499
CsiI	ACCWGGT	1 cut(s)	154
Csp6I	GTAC	4 cut(s)	48, 152, 389, 500
CviAII	CATG	3 cut(s)	96, 275, 592
CviJI	RGCY	9 cut(s)	53, 188, 197, 242, 305, 413, 422, 512, 564
CviKI_1	RGCY	9 cut(s)	53, 188, 197, 242, 305, 413, 422, 512, 564
CviQI	GTAC	4 cut(s)	48, 152, 389, 500
DdeI	CTNAG	2 cut(s)	183, 192
DpnI	GATC	3 cut(s)	38, 83, 604
DpnII	GATC	3 cut(s)	36, 81, 602
DraI	TTTAAA	1 cut(s)	231
EaeI	YGGCCR	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	307
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	405
EcoRII	CCWGG	2 cut(s)	154, 250
EcoRV	GATATC	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	307
FaeI	CATG	3 cut(s)	99, 278, 595
FaiI	YATR	9 cut(s)	97, 164, 276, 321, 340, 344, 367, 560, 593
FatI	CATG	3 cut(s)	95, 274, 591
Fnu4HI	GCNGC	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	565
FspBI	CTAG	2 cut(s)	380, 536
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	1 cut(s)	565
GsuI	CTGGAG	3 cut(s)	273, 309, 321
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	3 cut(s)	70, 91, 243
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	99, 278, 595
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	209, 571
HpaII	CCGG	3 cut(s)	70, 91, 243
HphI	GGTGA	2 cut(s)	89, 170
Hpy188I	TCNGA	2 cut(s)	267, 576
Hpy188III	TCNNGA	3 cut(s)	40, 85, 288
Hpy99I	CGWCG	2 cut(s)	13, 133
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	3 cut(s)	133, 223, 469
HpyCH4V	TGCA	3 cut(s)	437, 446, 567
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 203, 419, 443
HpyF3I	CTNAG	2 cut(s)	183, 192
Hsp92II	CATG	3 cut(s)	99, 278, 595
HspAI	GCGC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	36, 81, 602
LmnI	GCTCC	4 cut(s)	60, 193, 302, 316
Lsp1109I	GCAGC	1 cut(s)	551
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	2 cut(s)	380, 536
MaeIII	GTNAC	2 cut(s)	277, 482
MalI	GATC	3 cut(s)	38, 83, 604
MboI	GATC	3 cut(s)	36, 81, 602
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	3 cut(s)	201, 405, 555
MnlI	CCTC	6 cut(s)	163, 201, 248, 521, 538, 574
MseI	TTAA	2 cut(s)	230, 399
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	3 cut(s)	70, 91, 243
MspR9I	CCNGG	5 cut(s)	70, 71, 92, 156, 252
MvaI	CCWGG	2 cut(s)	156, 252
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	4 cut(s)	194, 203, 419, 443
NciI	CCSGG	3 cut(s)	70, 71, 92
NdeII	GATC	3 cut(s)	36, 81, 602
NlaIII	CATG	3 cut(s)	99, 278, 595
NlaIV	GGNNCC	4 cut(s)	6, 89, 109, 189
NspI	RCATGY	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	209, 571
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	154, 250
PspGI	CCWGG	2 cut(s)	154, 250
PspN4I	GGNNCC	4 cut(s)	6, 89, 109, 189
PspPI	GGNCC	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	4 cut(s)	49, 153, 390, 501
RsaNI	GTAC	4 cut(s)	48, 152, 389, 500
RseI	CAYNNNNRTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	230, 399
SatI	GCNGC	1 cut(s)	565
Sau3AI	GATC	3 cut(s)	36, 81, 602
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	5 cut(s)	70, 71, 92, 156, 252
SduI	GDGCHC	1 cut(s)	307
SexAI	ACCWGGT	1 cut(s)	154
SinI	GGWCC	1 cut(s)	5
SmaI	CCCGGG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	3 cut(s)	201, 405, 555
SspMI	CTAG	2 cut(s)	380, 536
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	5 cut(s)	68, 69, 90, 154, 250
TaaI	ACNGT	3 cut(s)	133, 223, 469
TaqI	TCGA	3 cut(s)	11, 39, 543
TasI	AATT	3 cut(s)	201, 405, 555
TfiI	GAWTC	2 cut(s)	209, 571
Tru1I	TTAA	2 cut(s)	230, 399
Tru9I	TTAA	2 cut(s)	230, 399
TscAI	CASTG	2 cut(s)	37, 474
TseI	GCWGC	1 cut(s)	564
TspDTI	ATGAA	1 cut(s)	215
TspMI	CCCGGG	1 cut(s)	69
TspRI	CASTG	2 cut(s)	37, 474
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	278
XmaI	CCCGGG	1 cut(s)	69
XspI	CTAG	2 cut(s)	380, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.