Rh2BG194300

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001026
Physical Location & Seq
Reverse (-)
17689463 .. 17692922
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG194300.1

Sequence Viewer

Length: 633 bp
ATGGGCGTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGGAAATTGGATGATATTTTGACTGATGTGCTGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGGTACTGTACCAGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGAGTAATGAGCAAATTGGGAGCAAAGTTGATTGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCCGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGGAACACGTAAAGCCATGAAAGATGTTTGTTTGAAATATAATCGATGTCAAGATTTTGCTTCTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

210

Amino Acids

22.75

Weight (kDa)

5.29

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AciI CCGC 3 cut(s) 148, 240, 261
AclWI GGATC 2 cut(s) 260, 432
AcsI RAATTY 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 5 cut(s) 247, 252, 286, 437, 445
AfiI CCNNNNNNNGG 3 cut(s) 203, 260, 275
AflIII ACRYGT 1 cut(s) 569
AgsI TTSAA 4 cut(s) 28, 154, 515, 598
AjnI CCWGG 1 cut(s) 547
AloI GAACNNNNNNTCC 2 cut(s) 543, 575
AluBI AGCT 3 cut(s) 317, 331, 494
AluI AGCT 3 cut(s) 317, 331, 494
Alw26I GTCTC 2 cut(s) 364, 483
AlwI GGATC 2 cut(s) 260, 432
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 121, 275, 377
AvaI CYCGRG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 292
BciT130I CCWGG 1 cut(s) 549
BcoDI GTCTC 2 cut(s) 364, 483
BfaI CTAG 2 cut(s) 270, 627
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 549
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 208, 486
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 350
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 2 cut(s) 122, 570
BpuEI CTTGAG 2 cut(s) 424, 474
Bsa29I ATCGAT 1 cut(s) 607
BsaAI YACGTR 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 2 cut(s) 543, 573
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 260, 275
Bse1I ACTGG 2 cut(s) 170, 254
Bse3DI GCAATG 1 cut(s) 197
BseBI CCWGG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 607
BseGI GGATG 2 cut(s) 85, 341
BseLI CCNNNNNNNGG 3 cut(s) 203, 260, 275
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 2 cut(s) 170, 254
BseRI GAGGAG 2 cut(s) 35, 477
BseXI GCAGC 1 cut(s) 292
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 291
BshVI ATCGAT 1 cut(s) 607
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 363
BslI CCNNNNNNNGG 3 cut(s) 203, 260, 275
BsmAI GTCTC 2 cut(s) 364, 483
Bso31I GGTCTC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 3 cut(s) 184, 265, 424
BspACI CCGC 3 cut(s) 148, 240, 261
BspDI ATCGAT 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 208, 486
BspPI GGATC 2 cut(s) 260, 432
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 1 cut(s) 197
BsrI ACTGG 2 cut(s) 170, 254
BssMI GATC 3 cut(s) 184, 265, 424
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 3 cut(s) 232, 250, 520
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 85, 341
BstKTI GATC 3 cut(s) 187, 268, 427
BstMAI GTCTC 2 cut(s) 364, 483
BstMBI GATC 3 cut(s) 184, 265, 424
BstMWI GCNNNNNNNGC 3 cut(s) 314, 491, 500
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
Bsu15I ATCGAT 1 cut(s) 607
BsuTUI ATCGAT 1 cut(s) 607
BtsCI GGATG 2 cut(s) 85, 341
Cac8I GCNNGC 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 607
Csp6I GTAC 5 cut(s) 246, 251, 285, 436, 444
CviAII CATG 3 cut(s) 203, 326, 580
CviJI RGCY 6 cut(s) 317, 331, 485, 494, 539, 578
CviKI_1 RGCY 6 cut(s) 317, 331, 485, 494, 539, 578
CviQI GTAC 5 cut(s) 246, 251, 285, 436, 444
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 186, 267, 426
DpnII GATC 3 cut(s) 184, 265, 424
DraI TTTAAA 2 cut(s) 354, 528
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 547
FaeI CATG 3 cut(s) 206, 329, 583
FaiI YATR 7 cut(s) 204, 314, 327, 407, 461, 581, 603
FatI CATG 3 cut(s) 202, 325, 579
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 92, 328
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 270, 627
GluI GCNGC 1 cut(s) 306
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 2 cut(s) 122, 570
HapII CCGG 1 cut(s) 363
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 3 cut(s) 206, 329, 583
HinfI GANTC 1 cut(s) 506
HpaII CCGG 1 cut(s) 363
HphI GGTGA 3 cut(s) 121, 275, 377
Hpy166II GTNNAC 2 cut(s) 163, 287
Hpy188III TCNNGA 4 cut(s) 20, 28, 298, 614
Hpy8I GTNNAC 2 cut(s) 163, 287
Hpy99I CGWCG 2 cut(s) 11, 38
HpyAV CCTTC 3 cut(s) 26, 100, 127
HpyCH4III ACNGT 3 cut(s) 232, 250, 520
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 2 cut(s) 202, 308
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 491, 500
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 571
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 3 cut(s) 206, 329, 583
Kzo9I GATC 3 cut(s) 184, 265, 424
LmnI GCTCC 2 cut(s) 390, 490
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 1 cut(s) 350
MaeI CTAG 2 cut(s) 270, 627
MaeII ACGT 1 cut(s) 571
MalI GATC 3 cut(s) 186, 267, 426
MboI GATC 3 cut(s) 184, 265, 424
MboII GAAGA 1 cut(s) 380
MflI RGATCY 1 cut(s) 424
MluCI AATT 4 cut(s) 74, 192, 384, 498
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 8 cut(s) 56, 63, 105, 415, 448, 460, 498, 545
MseI TTAA 4 cut(s) 138, 353, 414, 527
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MwoI GCNNNNNNNGC 3 cut(s) 314, 491, 500
NdeII GATC 3 cut(s) 184, 265, 424
NlaIII CATG 3 cut(s) 206, 329, 583
NlaIV GGNNCC 2 cut(s) 208, 486
PaeR7I CTCGAG 1 cut(s) 20
PfeI GAWTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 203
PfoI TCCNGGA 1 cut(s) 547
PkrI GCNGC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 572
Psp6I CCWGG 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 208, 486
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 5 cut(s) 247, 252, 286, 437, 445
RsaNI GTAC 5 cut(s) 246, 251, 285, 436, 444
SaqAI TTAA 4 cut(s) 138, 353, 414, 527
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 3 cut(s) 184, 265, 424
ScaI AGTACT 1 cut(s) 445
ScrFI CCNGG 1 cut(s) 549
SfaNI GCATC 1 cut(s) 350
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 3 cut(s) 20, 439, 489
SmoI CTYRAG 3 cut(s) 20, 439, 489
Sse9I AATT 4 cut(s) 74, 192, 384, 498
SsiI CCGC 3 cut(s) 148, 240, 261
SspMI CTAG 2 cut(s) 270, 627
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 3 cut(s) 232, 250, 520
TaiI ACGT 1 cut(s) 574
TaqI TCGA 3 cut(s) 9, 21, 607
TasI AATT 4 cut(s) 74, 192, 384, 498
TatI WGTACW 3 cut(s) 284, 435, 443
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 4 cut(s) 138, 353, 414, 527
Tru9I TTAA 4 cut(s) 138, 353, 414, 527
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 3 cut(s) 234, 512, 596
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 192
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 2 cut(s) 270, 627
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.