Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Reverse (-)

9522932 .. 9525856

Gene Structure 2925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACTTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGATCTTCTCTTCTCTTCGATTTGTGTTGTATTAGGAAATTGGATGATATTTTGACTGATGTGAACTGGAGAAGGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAATAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGTCTAGTTCTAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

157

Amino Acids

16.8

Weight (kDa)

5.91

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 192
AclWI	GGATC	2 cut(s)	79, 191
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	28, 362
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	394
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	3 cut(s)	248, 262, 341
AluI	AGCT	3 cut(s)	248, 262, 341
Alw26I	GTCTC	2 cut(s)	295, 330
AlwI	GGATC	2 cut(s)	79, 191
Ama87I	CYCGRG	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	236, 436
AsuHPI	GGTGA	3 cut(s)	206, 308, 424
AvaI	CYCGRG	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	223, 423
BciT130I	CCWGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	295, 330
BfaI	CTAG	2 cut(s)	201, 456
BisI	GCNGC	2 cut(s)	237, 437
BlsI	GCNGC	2 cut(s)	238, 438
Bme1390I	CCNGG	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	151, 333
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	2 cut(s)	157, 417
BpuEI	CTTGAG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	118, 272
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	35, 324
BseXI	GCAGC	2 cut(s)	223, 423
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	295, 330
BsmI	GAATGC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	71, 196
BspACI	CCGC	2 cut(s)	183, 192
BspLI	GGNNCC	2 cut(s)	151, 333
BspPI	GGATC	2 cut(s)	79, 191
BspTNI	GGTCTC	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	71, 196
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	4 cut(s)	84, 89, 294, 443
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	118, 272
BstKTI	GATC	2 cut(s)	74, 199
BstMAI	GTCTC	2 cut(s)	295, 330
BstMBI	GATC	2 cut(s)	71, 196
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 245, 338, 347
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	223, 423
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	118, 272
Cac8I	GCNNGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	146, 257
CviJI	RGCY	6 cut(s)	248, 262, 332, 341, 386, 431
CviKI_1	RGCY	6 cut(s)	248, 262, 332, 341, 386, 431
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	2 cut(s)	73, 198
DpnII	GATC	2 cut(s)	71, 196
DraI	TTTAAA	2 cut(s)	285, 375
Eam1104I	CTCTTC	4 cut(s)	84, 89, 294, 443
EarI	CTCTTC	4 cut(s)	84, 89, 294, 443
Eco31I	GGTCTC	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	2 cut(s)	149, 260
FaiI	YATR	4 cut(s)	147, 245, 258, 308
FatI	CATG	2 cut(s)	145, 256
Fnu4HI	GCNGC	2 cut(s)	237, 437
FokI	GGATG	2 cut(s)	125, 259
Fsp4HI	GCNGC	2 cut(s)	237, 437
FspBI	CTAG	2 cut(s)	201, 456
GluI	GCNGC	2 cut(s)	237, 437
GsaI	CCCAGC	1 cut(s)	266
GsuI	CTGGAG	2 cut(s)	157, 417
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	2 cut(s)	149, 260
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	3 cut(s)	206, 308, 424
Hpy166II	GTNNAC	2 cut(s)	133, 218
Hpy188III	TCNNGA	3 cut(s)	20, 28, 229
Hpy8I	GTNNAC	2 cut(s)	133, 218
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	26, 135, 409
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	2 cut(s)	239, 423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 245, 338, 347
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	149, 260
Kzo9I	GATC	2 cut(s)	71, 196
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	223, 423
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	201, 456
MaeII	ACGT	1 cut(s)	425
MalI	GATC	2 cut(s)	73, 198
MboI	GATC	2 cut(s)	71, 196
MboII	GAAGA	5 cut(s)	66, 71, 76, 311, 460
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	2 cut(s)	107, 345
MnlI	CCTC	7 cut(s)	56, 63, 295, 307, 345, 392, 444
MseI	TTAA	2 cut(s)	284, 374
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	189, 245, 338, 347
NdeII	GATC	2 cut(s)	71, 196
NlaIII	CATG	2 cut(s)	149, 260
NlaIV	GGNNCC	2 cut(s)	151, 333
PaeR7I	CTCGAG	1 cut(s)	20
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	238, 438
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	151, 333
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	284, 374
SatI	GCNGC	2 cut(s)	237, 437
Sau3AI	GATC	2 cut(s)	71, 196
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	9 cut(s)	18, 70, 155, 250, 264, 343, 414, 428, 455
SfaNI	GCATC	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	2 cut(s)	20, 336
SmoI	CTYRAG	2 cut(s)	20, 336
Sse9I	AATT	2 cut(s)	107, 345
SsiI	CCGC	2 cut(s)	183, 192
SspMI	CTAG	2 cut(s)	201, 456
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	3 cut(s)	9, 21, 87
TasI	AATT	2 cut(s)	107, 345
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	284, 374
Tru9I	TTAA	2 cut(s)	284, 374
TseI	GCWGC	2 cut(s)	236, 436
TspDTI	ATGAA	2 cut(s)	177, 359
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	2 cut(s)	201, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.