Rh2BG428000

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001026
Physical Location & Seq
Reverse (-)
60366054 .. 60371332
5279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG428000.1

Sequence Viewer

Length: 1044 bp
ATGTGGTCAGTGAGATCGAGAAGGGTACGGCTGACAGGAGCGTTGGCCGGGAAGGTGAGATCAGGAACCGGGTCGGTTAGTGGGATTCGGGTCTCGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATTGGCGGATTCCATTGCATGGAACATTGGAACCTTTGGAAGTGAAGTTGCGACGGTGCTTGGTGGTGGCATTATACCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCTGGTGAAGAGAGTATTGAGCAAATTGGGAGCAAAGCTGACCGTATGGGGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAGGCCCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACATCAGCCTTGCTGCGTTTTGTGAAGAGGACTAACATCCCGGTTTTCTTGATTGGGCATGAAACCAAATCTGGAGAGATTGCTGGACCTCGTCTTTTGGAGCATATTGTTGATGTTGTGCTCTACATAGAAGCATTATGTGTATCAGGTCTAGCAGTTGTACCTGTTGTTAATGGAATTCAAGCTAATAGAGCTTCCATCATTATTGCAGTACTTGCAAAGCAAGCTGGTCCAAAGCTCAAAGACAATGCCATCTTCTTAAATGTTGTTAGCAGGGTGATGCTGAAAGAAACTGCCAGTGATCTTGCAATAGCCGCAGCAATTTGCAGCAGGCATGTTTCTGCAATGGATAAAAGGATAGATACAGTGGCAAAACTGGGTTACAAGACGTGCATTGTACCAAAGTCAGCTGAAAAATCTGTAAGAGGAACTCTAGGTTTCGAGGATATCAAAATTATAGGCTGCAAGAATCTGAAAGAGGTCATCAACATCGTGTTTAGATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

347

Amino Acids

37.75

Weight (kDa)

9.59

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 3 cut(s) 142, 184, 849
AclWI GGATC 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 711
AfaI GTAC 6 cut(s) 27, 395, 403, 696, 747, 933
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 148, 473, 716
AjiI CACGTC 1 cut(s) 924
AjnI CCWGG 1 cut(s) 505
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 8 cut(s) 275, 289, 356, 719, 728, 761, 772, 944
AluI AGCT 8 cut(s) 275, 289, 356, 719, 728, 761, 772, 944
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 3 cut(s) 97, 322, 441
AlwI GGATC 1 cut(s) 390
AoxI GGCC 2 cut(s) 45, 450
ApeKI GCWGC 5 cut(s) 263, 547, 851, 861, 996
ApoI RAATTY 1 cut(s) 711
AspS9I GGNCC 3 cut(s) 451, 620, 764
AsuC2I CCSGG 3 cut(s) 49, 70, 575
AsuHPI GGTGA 5 cut(s) 67, 115, 335, 535, 823
AvaII GGWCC 2 cut(s) 620, 764
AxyI CCTNAGG 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 5 cut(s) 250, 534, 863, 873, 983
BccI CCATC 2 cut(s) 740, 794
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 3 cut(s) 49, 70, 575
BcoDI GTCTC 3 cut(s) 97, 322, 441
BfaI CTAG 2 cut(s) 686, 968
BisI GCNGC 6 cut(s) 264, 548, 849, 852, 862, 997
BlsI GCNGC 6 cut(s) 265, 549, 850, 853, 863, 998
BmcAI AGTACT 2 cut(s) 403, 747
Bme1390I CCNGG 4 cut(s) 49, 70, 507, 575
Bme18I GGWCC 2 cut(s) 620, 764
BmgBI CACGTC 1 cut(s) 924
BmgT120I GGNCC 3 cut(s) 451, 620, 764
BmiI GGNNCC 3 cut(s) 67, 210, 444
BmrFI CCNGG 4 cut(s) 49, 70, 507, 575
BmrI ACTGGG 2 cut(s) 169, 920
BmsI GCATC 2 cut(s) 308, 804
BmuI ACTGGG 2 cut(s) 169, 920
BpmI CTGGAG 2 cut(s) 528, 627
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 3 cut(s) 49, 70, 575
BsaI GGTCTC 2 cut(s) 97, 441
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 164, 831, 915
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 2 cut(s) 191, 885
BseBI CCWGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 299, 570
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 191, 885
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 3 cut(s) 164, 831, 915
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 5 cut(s) 250, 534, 863, 873, 983
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 47, 452
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 3 cut(s) 48, 69, 575
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 97, 322, 441
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 2 cut(s) 47, 452
Bso31I GGTCTC 2 cut(s) 97, 441
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 5 cut(s) 14, 59, 382, 835, 1034
BspACI CCGC 3 cut(s) 142, 184, 849
BspANI GGCC 2 cut(s) 47, 452
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 67, 210, 444
BspPI GGATC 1 cut(s) 390
BspTNI GGTCTC 2 cut(s) 97, 441
BsrDI GCAATG 2 cut(s) 191, 885
BsrI ACTGG 3 cut(s) 164, 831, 915
BssMI GATC 5 cut(s) 14, 59, 382, 835, 1034
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 4 cut(s) 234, 362, 478, 901
Bst6I CTCTTC 2 cut(s) 321, 554
BstAPI GCANNNNNTGC 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 759, 866
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 2 cut(s) 299, 570
BstKTI GATC 5 cut(s) 17, 62, 385, 838, 1037
BstMAI GTCTC 3 cut(s) 97, 322, 441
BstMBI GATC 5 cut(s) 14, 59, 382, 835, 1034
BstMWI GCNNNNNNNGC 7 cut(s) 272, 449, 458, 725, 749, 758, 848
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 4 cut(s) 47, 68, 505, 573
BstV1I GCAGC 5 cut(s) 250, 534, 863, 873, 983
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 47, 452
BtrI CACGTC 1 cut(s) 924
BtsCI GGATG 2 cut(s) 299, 570
BtsIMutI CAGTG 3 cut(s) 15, 838, 906
Cac8I GCNNGC 2 cut(s) 759, 866
Cfr13I GGNCC 3 cut(s) 451, 620, 764
Csp6I GTAC 6 cut(s) 26, 394, 402, 695, 746, 932
CviAII CATG 4 cut(s) 197, 284, 593, 869
CviQI GTAC 6 cut(s) 26, 394, 402, 695, 746, 932
DdeI CTNAG 1 cut(s) 447
DpnI GATC 5 cut(s) 16, 61, 384, 837, 1036
DpnII GATC 5 cut(s) 14, 59, 382, 835, 1034
DraI TTTAAA 2 cut(s) 312, 486
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 321, 554
EarI CTCTTC 2 cut(s) 321, 554
EciI GGCGGA 1 cut(s) 199
Eco31I GGTCTC 2 cut(s) 97, 441
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 620, 764
Eco81I CCTNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 451
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 1 cut(s) 505
EcoRV GATATC 1 cut(s) 982
FaeI CATG 4 cut(s) 200, 287, 596, 872
FatI CATG 4 cut(s) 196, 283, 592, 868
Fnu4HI GCNGC 6 cut(s) 264, 548, 849, 852, 862, 997
FokI GGATG 2 cut(s) 286, 557
Fsp4HI GCNGC 6 cut(s) 264, 548, 849, 852, 862, 997
FspBI CTAG 2 cut(s) 686, 968
GluI GCNGC 6 cut(s) 264, 548, 849, 852, 862, 997
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 2 cut(s) 528, 627
HaeIII GGCC 2 cut(s) 47, 452
HapII CCGG 3 cut(s) 48, 69, 575
Hin1II CATG 4 cut(s) 200, 287, 596, 872
HinfI GANTC 4 cut(s) 85, 187, 464, 1003
HpaII CCGG 3 cut(s) 48, 69, 575
HphI GGTGA 5 cut(s) 67, 115, 335, 535, 823
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 97, 1008
Hpy188III TCNNGA 4 cut(s) 18, 63, 583, 606
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 5 cut(s) 15, 46, 94, 121, 520
HpyCH4III ACNGT 4 cut(s) 234, 362, 478, 901
HpyCH4IV ACGT 1 cut(s) 923
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 449, 458, 725, 749, 758, 848
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 923
Hsp92II CATG 4 cut(s) 200, 287, 596, 872
Kzo9I GATC 5 cut(s) 14, 59, 382, 835, 1034
LmnI GCTCC 4 cut(s) 38, 348, 448, 634
Lsp1109I GCAGC 5 cut(s) 250, 534, 863, 873, 983
LweI GCATC 2 cut(s) 308, 804
MaeI CTAG 2 cut(s) 686, 968
MaeII ACGT 1 cut(s) 923
MaeIII GTNAC 1 cut(s) 914
MalI GATC 5 cut(s) 16, 61, 384, 837, 1036
MboI GATC 5 cut(s) 14, 59, 382, 835, 1034
MboII GAAGA 3 cut(s) 338, 571, 781
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 5 cut(s) 342, 456, 711, 855, 987
MmeI TCCRAC 1 cut(s) 152
MseI TTAA 6 cut(s) 132, 311, 372, 485, 705, 794
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 3 cut(s) 48, 69, 575
MspR9I CCNGG 4 cut(s) 49, 70, 507, 575
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 7 cut(s) 272, 449, 458, 725, 749, 758, 848
NciI CCSGG 3 cut(s) 49, 70, 575
NdeII GATC 5 cut(s) 14, 59, 382, 835, 1034
NlaIII CATG 4 cut(s) 200, 287, 596, 872
NlaIV GGNNCC 3 cut(s) 67, 210, 444
NspI RCATGY 1 cut(s) 872
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 4 cut(s) 85, 187, 464, 1003
PflFI GACNNNGTC 1 cut(s) 624
PflMI CCANNNNNTGG 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 6 cut(s) 265, 549, 850, 853, 863, 998
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 3 cut(s) 67, 210, 444
PspPI GGNCC 3 cut(s) 451, 620, 764
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 944
RsaI GTAC 6 cut(s) 27, 395, 403, 696, 747, 933
RsaNI GTAC 6 cut(s) 26, 394, 402, 695, 746, 932
SaqAI TTAA 6 cut(s) 132, 311, 372, 485, 705, 794
SatI GCNGC 6 cut(s) 264, 548, 849, 852, 862, 997
Sau3AI GATC 5 cut(s) 14, 59, 382, 835, 1034
Sau96I GGNCC 3 cut(s) 451, 620, 764
ScaI AGTACT 2 cut(s) 403, 747
ScrFI CCNGG 4 cut(s) 49, 70, 507, 575
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 2 cut(s) 308, 804
SinI GGWCC 2 cut(s) 620, 764
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 5 cut(s) 342, 456, 711, 855, 987
SsiI CCGC 3 cut(s) 142, 184, 849
SspMI CTAG 2 cut(s) 686, 968
StyD4I CCNGG 4 cut(s) 47, 68, 505, 573
TaaI ACNGT 4 cut(s) 234, 362, 478, 901
TaiI ACGT 1 cut(s) 926
TaqI TCGA 2 cut(s) 17, 975
TasI AATT 5 cut(s) 342, 456, 711, 855, 987
TatI WGTACW 3 cut(s) 393, 401, 745
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 4 cut(s) 85, 187, 464, 1003
Tru1I TTAA 6 cut(s) 132, 311, 372, 485, 705, 794
Tru9I TTAA 6 cut(s) 132, 311, 372, 485, 705, 794
TscAI CASTG 3 cut(s) 15, 838, 906
TseI GCWGC 5 cut(s) 263, 547, 851, 861, 996
TspDTI ATGAA 2 cut(s) 470, 609
TspRI CASTG 3 cut(s) 15, 838, 906
Tth111I GACNNNGTC 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 620, 764
XapI RAATTY 1 cut(s) 711
XceI RCATGY 1 cut(s) 872
XspI CTAG 2 cut(s) 686, 968
ZrmI AGTACT 2 cut(s) 403, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.