Rh2BG270500

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001026
Physical Location & Seq
Forward (+)
29176915 .. 29180516
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG270500.1

Sequence Viewer

Length: 444 bp
ATGGACGTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGGTACTGTACCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGAGTAATGAGCAAATTGGGAGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATTTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCCGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

147

Amino Acids

16.34

Weight (kDa)

4.79

Isoelectric Point (pI)

35.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 9
AciI CCGC 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 4 cut(s) 114, 119, 260, 268
AgsI TTSAA 2 cut(s) 28, 338
AjnI CCWGG 1 cut(s) 370
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 4 cut(s) 140, 154, 221, 317
AluI AGCT 4 cut(s) 140, 154, 221, 317
Alw26I GTCTC 2 cut(s) 187, 306
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 187, 306
BfaI CTAG 1 cut(s) 419
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 372
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 75, 309
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 173
BpmI CTGGAG 1 cut(s) 393
BpuEI CTTGAG 2 cut(s) 247, 297
BsaHI GRCGYC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
BseBI CCWGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 164
BseRI GAGGAG 2 cut(s) 35, 300
BseXI GCAGC 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 154
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 187, 306
BsnI GGCC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 389
BspLI GGNNCC 2 cut(s) 75, 309
BspTNI GGTCTC 1 cut(s) 306
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 99, 117, 343
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 2 cut(s) 187, 306
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 137, 314, 323
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 1 cut(s) 402
Csp6I GTAC 4 cut(s) 113, 118, 259, 267
CviAII CATG 2 cut(s) 70, 149
CviJI RGCY 8 cut(s) 140, 154, 221, 308, 317, 362, 389, 439
CviKI_1 RGCY 8 cut(s) 140, 154, 221, 308, 317, 362, 389, 439
CviQI GTAC 4 cut(s) 113, 118, 259, 267
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraI TTTAAA 2 cut(s) 177, 351
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 389
Eco31I GGTCTC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 73, 152
FaiI YATR 5 cut(s) 71, 137, 150, 230, 284
FatI CATG 2 cut(s) 69, 148
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 419
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 393
HaeIII GGCC 1 cut(s) 389
HapII CCGG 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 2 cut(s) 73, 152
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 200
Hpy188III TCNNGA 2 cut(s) 20, 28
Hpy99I CGWCG 2 cut(s) 11, 38
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 99, 117, 343
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 314, 323
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 2 cut(s) 73, 152
Kzo9I GATC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 213, 313
LpnPI CCDG 8 cut(s) 134, 140, 199, 290, 348, 357, 371, 384
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 173
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MboII GAAGA 1 cut(s) 203
MluCI AATT 2 cut(s) 207, 321
MnlI CCTC 8 cut(s) 56, 63, 238, 271, 283, 321, 368, 400
MseI TTAA 3 cut(s) 176, 237, 350
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 137, 314, 323
NdeII GATC 1 cut(s) 223
NlaIII CATG 2 cut(s) 73, 152
NlaIV GGNNCC 2 cut(s) 75, 309
PaeR7I CTCGAG 1 cut(s) 20
PceI AGGCCT 1 cut(s) 389
PfeI GAWTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 75, 309
RsaI GTAC 4 cut(s) 114, 119, 260, 268
RsaNI GTAC 4 cut(s) 113, 118, 259, 267
SaqAI TTAA 3 cut(s) 176, 237, 350
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 223
ScaI AGTACT 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 372
SetI ASST 7 cut(s) 9, 18, 79, 142, 156, 223, 319
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 3 cut(s) 20, 262, 312
SmoI CTYRAG 3 cut(s) 20, 262, 312
Sse9I AATT 2 cut(s) 207, 321
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 419
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 370
TaaI ACNGT 3 cut(s) 99, 117, 343
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 9, 21
TasI AATT 2 cut(s) 207, 321
TatI WGTACW 2 cut(s) 258, 266
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 176, 237, 350
Tru9I TTAA 3 cut(s) 176, 237, 350
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 101, 335
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 1 cut(s) 419
ZraI GACGTC 1 cut(s) 7
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.