Rh3CG342200

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001026
Physical Location & Seq
Forward (+)
38677596 .. 38681247
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG342200.1

Sequence Viewer

Length: 573 bp
ATGATGGACGTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGGTCTTCTCTTCTCTTCGATTTGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGGTACTGTACCAGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCAGTGTTTTAAATGTCTCCGGTAAAGAGAGTAATGAGCAAATTGGGAGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTATTGATATTGAGGATATATTAGAGGAAAGTTGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGTGTTTTGCGAAGAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

190

Amino Acids

20.87

Weight (kDa)

5.15

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 191
AciI CCGC 3 cut(s) 136, 228, 249
AclWI GGATC 2 cut(s) 248, 420
AcsI RAATTY 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 4 cut(s) 235, 240, 274, 425
AfiI CCNNNNNNNGG 3 cut(s) 191, 248, 263
AgsI TTSAA 2 cut(s) 31, 142
AjiI CACGTC 1 cut(s) 490
AluBI AGCT 3 cut(s) 305, 319, 386
AluI AGCT 3 cut(s) 305, 319, 386
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 2 cut(s) 248, 420
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 516
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 180
AsuHPI GGTGA 3 cut(s) 109, 263, 488
AvaI CYCGRG 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 2 cut(s) 258, 548
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 9
BsaWI WCCGGW 1 cut(s) 350
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 248, 263
Bse1I ACTGG 3 cut(s) 158, 242, 333
Bse3DI GCAATG 1 cut(s) 185
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 3 cut(s) 191, 248, 263
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 158, 242, 333
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 280
BseYI CCCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 518
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 191, 248, 263
BsmAI GTCTC 1 cut(s) 352
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 4 cut(s) 172, 253, 388, 412
BspACI CCGC 3 cut(s) 136, 228, 249
BspANI GGCC 1 cut(s) 518
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 248, 420
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 158, 242, 333
BssMI GATC 4 cut(s) 172, 253, 388, 412
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 220, 238
Bst6I CTCTTC 3 cut(s) 87, 92, 507
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 265, 531
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 1 cut(s) 329
BstKTI GATC 4 cut(s) 175, 256, 391, 415
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 4 cut(s) 172, 253, 388, 412
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 1 cut(s) 518
BtrI CACGTC 1 cut(s) 490
BtsCI GGATG 1 cut(s) 329
BtsIMutI CAGTG 1 cut(s) 340
Cac8I GCNNGC 2 cut(s) 265, 531
Csp6I GTAC 4 cut(s) 234, 239, 273, 424
CviAII CATG 2 cut(s) 191, 314
CviJI RGCY 6 cut(s) 305, 319, 386, 495, 518, 568
CviKI_1 RGCY 6 cut(s) 305, 319, 386, 495, 518, 568
CviQI GTAC 4 cut(s) 234, 239, 273, 424
DdeI CTNAG 1 cut(s) 62
DpnI GATC 4 cut(s) 174, 255, 390, 414
DpnII GATC 4 cut(s) 172, 253, 388, 412
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 3 cut(s) 87, 92, 507
EarI CTCTTC 3 cut(s) 87, 92, 507
Eco147I AGGCCT 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 180
FaeI CATG 2 cut(s) 194, 317
FaiI YATR 5 cut(s) 192, 302, 315, 395, 449
FatI CATG 2 cut(s) 190, 313
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 2 cut(s) 258, 548
GluI GCNGC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 323
HaeIII GGCC 1 cut(s) 518
HapII CCGG 1 cut(s) 351
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 194, 317
HpaII CCGG 1 cut(s) 351
HphI GGTGA 3 cut(s) 109, 263, 488
Hpy166II GTNNAC 2 cut(s) 151, 275
Hpy188III TCNNGA 3 cut(s) 23, 31, 286
Hpy8I GTNNAC 2 cut(s) 151, 275
Hpy99I CGWCG 2 cut(s) 14, 41
HpyAV CCTTC 3 cut(s) 29, 115, 473
HpyCH4III ACNGT 2 cut(s) 220, 238
HpyCH4IV ACGT 2 cut(s) 9, 489
HpyCH4V TGCA 3 cut(s) 190, 296, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 2 cut(s) 9, 489
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 194, 317
Kzo9I GATC 4 cut(s) 172, 253, 388, 412
LmnI GCTCC 1 cut(s) 378
LpnPI CCDG 8 cut(s) 139, 249, 255, 299, 305, 346, 364, 459
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 1 cut(s) 338
MaeI CTAG 2 cut(s) 258, 548
MaeII ACGT 2 cut(s) 9, 489
MalI GATC 4 cut(s) 174, 255, 390, 414
MboI GATC 4 cut(s) 172, 253, 388, 412
MboII GAAGA 4 cut(s) 69, 74, 79, 524
MflI RGATCY 1 cut(s) 412
MluCI AATT 2 cut(s) 180, 372
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 8 cut(s) 59, 66, 93, 403, 436, 448, 508, 529
MseI TTAA 3 cut(s) 126, 341, 402
MspI CCGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 489
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 4 cut(s) 172, 253, 388, 412
NlaIII CATG 2 cut(s) 194, 317
NlaIV GGNNCC 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 23
PceI AGGCCT 1 cut(s) 518
PctI GAATGC 1 cut(s) 489
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 4 cut(s) 235, 240, 274, 425
RsaNI GTAC 4 cut(s) 234, 239, 273, 424
SaqAI TTAA 3 cut(s) 126, 341, 402
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 4 cut(s) 172, 253, 388, 412
SfaNI GCATC 1 cut(s) 338
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 2 cut(s) 23, 427
SmoI CTYRAG 2 cut(s) 23, 427
Sse9I AATT 2 cut(s) 180, 372
SseBI AGGCCT 1 cut(s) 518
SsiI CCGC 3 cut(s) 136, 228, 249
SspMI CTAG 2 cut(s) 258, 548
StuI AGGCCT 1 cut(s) 518
TaaI ACNGT 2 cut(s) 220, 238
TaiI ACGT 2 cut(s) 12, 492
TaqI TCGA 3 cut(s) 12, 24, 90
TasI AATT 2 cut(s) 180, 372
TatI WGTACW 2 cut(s) 272, 423
Tru1I TTAA 3 cut(s) 126, 341, 402
Tru9I TTAA 3 cut(s) 126, 341, 402
TscAI CASTG 1 cut(s) 340
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 2 cut(s) 258, 548
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.