Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Forward (+)

37130657 .. 37134934

Gene Structure 4278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATTCCCGACACGCATCTCTAGGCCGCCGAACGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCGGCATGGAACCTTTGGAAATGAAGTTGCGACGGTGCTTGGCGGTGGTACTGTACCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCATGTTTTAAATGTCTCCGGTGAAGAGAGTAGTGAGCAAATTGGGAGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGCCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCTTGGAGGCATTGTTCAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGGAACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

166

Amino Acids

18.31

Weight (kDa)

5.85

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 161
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	2 cut(s)	103, 309
AcsI	RAATTY	1 cut(s)	45
AfaI	GTAC	4 cut(s)	168, 173, 314, 322
AfiI	CCNNNNNNNGG	2 cut(s)	37, 119
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	1 cut(s)	392
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	5 cut(s)	62, 194, 208, 275, 371
AluI	AGCT	5 cut(s)	62, 194, 208, 275, 371
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	103, 309
AoxI	GGCC	3 cut(s)	25, 353, 441
ApeKI	GCWGC	2 cut(s)	62, 182
ApoI	RAATTY	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	49, 169
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	2 cut(s)	23, 473
BfmI	CTRYAG	1 cut(s)	63
BisI	GCNGC	3 cut(s)	28, 63, 183
BlsI	GCNGC	3 cut(s)	29, 64, 184
BmcAI	AGTACT	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmiI	GGNNCC	4 cut(s)	93, 94, 129, 363
BmsI	GCATC	2 cut(s)	26, 227
BpuEI	CTTGAG	2 cut(s)	301, 351
BsaAI	YACGTR	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 119
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	2 cut(s)	37, 119
BseMII	CTCAG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	49, 169
BseYI	CCCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	27, 355, 443
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	37, 119
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	3 cut(s)	27, 355, 443
Bsp143I	GATC	4 cut(s)	97, 108, 277, 301
BspACI	CCGC	2 cut(s)	28, 161
BspANI	GGCC	3 cut(s)	27, 355, 443
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	93, 94, 129, 363
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	103, 309
BssMI	GATC	4 cut(s)	97, 108, 277, 301
Bst4CI	ACNGT	3 cut(s)	153, 171, 397
Bst6I	CTCTTC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	60, 456
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	218
BstKTI	GATC	4 cut(s)	100, 111, 280, 304
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	4 cut(s)	97, 108, 277, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 368, 377
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	49, 169
BstX2I	RGATCY	2 cut(s)	108, 301
BstYI	RGATCY	2 cut(s)	108, 301
BsuRI	GGCC	3 cut(s)	27, 355, 443
BtsCI	GGATG	1 cut(s)	218
Cac8I	GCNNGC	2 cut(s)	60, 456
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	4 cut(s)	167, 172, 313, 321
CviAII	CATG	3 cut(s)	124, 203, 224
CviQI	GTAC	4 cut(s)	167, 172, 313, 321
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	4 cut(s)	99, 110, 279, 303
DpnII	GATC	4 cut(s)	97, 108, 277, 301
DraI	TTTAAA	2 cut(s)	231, 405
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	92
FaeI	CATG	3 cut(s)	127, 206, 227
FaiI	YATR	6 cut(s)	125, 191, 204, 225, 284, 338
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	123, 202, 223
Fnu4HI	GCNGC	3 cut(s)	28, 63, 183
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	28, 63, 183
FspBI	CTAG	2 cut(s)	23, 473
GluI	GCNGC	3 cut(s)	28, 63, 183
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	27, 355, 443
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	3 cut(s)	127, 206, 227
HinfI	GANTC	2 cut(s)	5, 383
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	254
Hpy188III	TCNNGA	2 cut(s)	9, 90
Hpy99I	CGWCG	1 cut(s)	153
HpyCH4III	ACNGT	3 cut(s)	153, 171, 397
HpyCH4IV	ACGT	2 cut(s)	35, 497
HpyCH4V	TGCA	2 cut(s)	65, 185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 368, 377
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	35, 497
Hsp92II	CATG	3 cut(s)	127, 206, 227
KflI	GGGWCCC	1 cut(s)	92
Kzo9I	GATC	4 cut(s)	97, 108, 277, 301
LmnI	GCTCC	2 cut(s)	267, 367
LpnPI	CCDG	7 cut(s)	119, 188, 194, 253, 344, 402, 425
Lsp1109I	GCAGC	2 cut(s)	49, 169
LweI	GCATC	2 cut(s)	26, 227
MaeI	CTAG	2 cut(s)	23, 473
MaeII	ACGT	2 cut(s)	35, 497
MalI	GATC	4 cut(s)	99, 110, 279, 303
MboI	GATC	4 cut(s)	97, 108, 277, 301
MboII	GAAGA	3 cut(s)	53, 78, 257
MflI	RGATCY	2 cut(s)	108, 301
MluCI	AATT	3 cut(s)	45, 261, 375
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	7 cut(s)	292, 325, 337, 366, 375, 422, 454
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	230, 291, 404
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	3 cut(s)	191, 368, 377
NdeII	GATC	4 cut(s)	97, 108, 277, 301
NlaIII	CATG	3 cut(s)	127, 206, 227
NlaIV	GGNNCC	4 cut(s)	93, 94, 129, 363
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	5, 383
PkrI	GCNGC	3 cut(s)	29, 64, 184
Ppu21I	YACGTR	1 cut(s)	498
PpuMI	RGGWCCY	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	208
PspN4I	GGNNCC	4 cut(s)	93, 94, 129, 363
PspPI	GGNCC	1 cut(s)	92
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	108, 301
RsaI	GTAC	4 cut(s)	168, 173, 314, 322
RsaNI	GTAC	4 cut(s)	167, 172, 313, 321
SaqAI	TTAA	3 cut(s)	230, 291, 404
SatI	GCNGC	3 cut(s)	28, 63, 183
Sau3AI	GATC	4 cut(s)	97, 108, 277, 301
Sau96I	GGNCC	1 cut(s)	92
ScaI	AGTACT	1 cut(s)	322
SetI	ASST	9 cut(s)	38, 64, 118, 133, 196, 210, 277, 373, 500
SfaNI	GCATC	2 cut(s)	26, 227
SfcI	CTRYAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	316, 366
SmoI	CTYRAG	2 cut(s)	316, 366
Sse9I	AATT	3 cut(s)	45, 261, 375
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	28, 161
SspMI	CTAG	2 cut(s)	23, 473
StuI	AGGCCT	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	153, 171, 397
TaiI	ACGT	2 cut(s)	38, 500
TasI	AATT	3 cut(s)	45, 261, 375
TatI	WGTACW	2 cut(s)	312, 320
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	5, 383
Tru1I	TTAA	3 cut(s)	230, 291, 404
Tru9I	TTAA	3 cut(s)	230, 291, 404
TseI	GCWGC	2 cut(s)	62, 182
TspDTI	ATGAA	2 cut(s)	155, 389
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	45
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	23, 473
ZrmI	AGTACT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.