Rorug02G0367100

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001026
Physical Location & Seq
Reverse (-)
46715931 .. 46717554
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0367100.1

Sequence Viewer

Length: 894 bp
ATGGTGCATTCAAAGGCTGTCTCAAATCCAACAAAGAAGACTTCAAAAACACATAAAGTAAGGAAGTCGAAGTCTTCAAAGACCAAGGATAGGGAATCTGTTTCAAATAATTCTGCTGCAAGTGTGAGTAAATCAAAGAAGCGCGGGAAGAAGAAGACGCAGGAGGAGGATGATGGATGTACTGGAGGGCTTAAGTTGCTCAAGCGTCACCGCGTTACAATGTCAAGGATGACAACGAGCAGGATTCTAAAGAAGAGACTTATAGTCGAGTTTGATAAGAATGGGGATCCAATAGGGAATAATGCAGATGCATTGCAATCCTACATCGGTGTTTTGGCAAGGACTAATATCCCAATTTCAATAGTATCTTGGCCTAAAGTATCGAAGACAAAAAAAAGCAATCTTTGGGAGACCGTTCTGACGTCATTCGTATTGGGACCTGAATGCAAGAAGATGGTTTTAAAATCTGCTGGAACGAAATGGAGAGAATTTAAGTCAAGACTCACAACATTGTATGTGTTGCCATATTTGGATGCTCCTGAATCTTTACAATTTCCCCCCGATGACTATAGGTTTATAACTGTTGATGATTGGAATGTTTTTGTAAAGGAAAGGACAAGCGATTCATTTTTGAAAATGCATGAGGAACAAAAGGCAAGGCGTCACAAAAATGTGTATGATCACCATATGTCGCGTAAGGGATACGCGGGATTGAGAGAAGAGCTGTCTAAAACTGTGCCAGAAGAGGAAATCGATAGAGCAACGCTTTGGGTCAAAGGACGCCAAACCAAACAAGGAACTTTTAAACATGATGTGATTAAAGATACTGCTGAAAAAATTGTATGTACCTTATACTTGTTTCATTTTGCTATTCTAGTTTGGTGTCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

297

Amino Acids

34.18

Weight (kDa)

9.9

Isoelectric Point (pI)

49.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 196 - 279 3.8e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AatII GACGTC 1 cut(s) 425
AccII CGCG 4 cut(s) 144, 213, 694, 707
AciI CCGC 3 cut(s) 144, 211, 707
AclWI GGATC 2 cut(s) 281, 294
AcsI RAATTY 1 cut(s) 488
AcyI GRCGYC 3 cut(s) 422, 661, 781
AfaI GTAC 2 cut(s) 181, 847
AfiI CCNNNNNNNGG 1 cut(s) 90
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 6 cut(s) 12, 45, 78, 105, 360, 634
AhdI GACNNNNNGTC 1 cut(s) 263
AluBI AGCT 1 cut(s) 724
AluI AGCT 1 cut(s) 724
Alw26I GTCTC 3 cut(s) 25, 250, 404
AlwI GGATC 2 cut(s) 281, 294
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 488
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 200, 674
AvaII GGWCC 1 cut(s) 437
BamHI GGATCC 1 cut(s) 286
BbsI GAAGAC 4 cut(s) 44, 66, 161, 392
BbvI GCAGC 1 cut(s) 103
BccI CCATC 2 cut(s) 167, 448
BciVI GTATCC 1 cut(s) 695
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 3 cut(s) 25, 250, 404
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 568
BfrI CTTAAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 437
BmeRI GACNNNNNGTC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 288, 438
BmsI GCATC 2 cut(s) 298, 523
BpiI GAAGAC 4 cut(s) 44, 66, 161, 392
BpmI CTGGAG 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 753
BsaHI GRCGYC 3 cut(s) 422, 661, 781
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 4 cut(s) 175, 182, 234, 538
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 4 cut(s) 144, 213, 694, 707
BshFI GGCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 753
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 3 cut(s) 25, 250, 404
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 2 cut(s) 7, 449
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 404
Bsp143I GATC 2 cut(s) 286, 679
BspACI CCGC 3 cut(s) 144, 211, 707
BspANI GGCC 1 cut(s) 373
BspDI ATCGAT 1 cut(s) 753
BspFNI CGCG 4 cut(s) 144, 213, 694, 707
BspLI GGNNCC 2 cut(s) 288, 438
BspPI GGATC 2 cut(s) 281, 294
BspQI GCTCTTC 1 cut(s) 714
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 311
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 2 cut(s) 286, 679
BssNI GRCGYC 3 cut(s) 422, 661, 781
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 415, 583, 736
Bst6I CTCTTC 3 cut(s) 248, 714, 738
BstACI GRCGYC 3 cut(s) 422, 661, 781
BstAFI CTTAAG 1 cut(s) 191
BstF5I GGATG 4 cut(s) 175, 182, 234, 538
BstFNI CGCG 4 cut(s) 144, 213, 694, 707
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 289, 682
BstMAI GTCTC 3 cut(s) 25, 250, 404
BstMBI GATC 2 cut(s) 286, 679
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 568
BstUI CGCG 4 cut(s) 144, 213, 694, 707
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 4 cut(s) 44, 66, 161, 392
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
Bsu15I ATCGAT 1 cut(s) 753
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 753
BtsCI GGATG 4 cut(s) 175, 182, 234, 538
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 437
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 4 cut(s) 166, 194, 650, 789
Csp6I GTAC 2 cut(s) 180, 846
CviAII CATG 2 cut(s) 641, 809
CviJI RGCY 4 cut(s) 17, 190, 373, 724
CviKI_1 RGCY 4 cut(s) 17, 190, 373, 724
CviQI GTAC 2 cut(s) 180, 846
DpnI GATC 2 cut(s) 288, 681
DpnII GATC 2 cut(s) 286, 679
DraI TTTAAA 2 cut(s) 462, 805
DriI GACNNNNNGTC 1 cut(s) 263
Eam1104I CTCTTC 3 cut(s) 248, 714, 738
Eam1105I GACNNNNNGTC 1 cut(s) 263
EarI CTCTTC 3 cut(s) 248, 714, 738
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 1 cut(s) 437
EcoO109I RGGNCCY 1 cut(s) 437
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 2 cut(s) 313, 642
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 644, 812
FaqI GGGAC 1 cut(s) 450
FatI CATG 2 cut(s) 640, 808
FauI CCCGC 2 cut(s) 137, 700
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 4 cut(s) 182, 189, 241, 545
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 875
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 373
HgaI GACGC 4 cut(s) 166, 194, 650, 789
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 3 cut(s) 422, 661, 781
Hin1II CATG 2 cut(s) 644, 812
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HinfI GANTC 5 cut(s) 95, 244, 501, 542, 623
HphI GGTGA 2 cut(s) 200, 674
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 498, 539
HpyCH4III ACNGT 3 cut(s) 415, 583, 736
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 7 cut(s) 7, 119, 305, 311, 316, 447, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 422
Hsp92I GRCGYC 3 cut(s) 422, 661, 781
Hsp92II CATG 2 cut(s) 644, 812
HspAI GCGC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 2 cut(s) 286, 679
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 1 cut(s) 541
LpnPI CCDG 7 cut(s) 146, 168, 226, 453, 456, 552, 753
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 298, 523
MaeI CTAG 1 cut(s) 875
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 3 cut(s) 206, 214, 662
MalI GATC 2 cut(s) 288, 681
MboI GATC 2 cut(s) 286, 679
MflI RGATCY 1 cut(s) 286
MluCI AATT 5 cut(s) 109, 354, 488, 551, 837
MlyI GAGTC 1 cut(s) 495
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 5 cut(s) 157, 160, 179, 637, 739
Mph1103I ATGCAT 2 cut(s) 313, 642
MseI TTAA 5 cut(s) 192, 461, 492, 804, 819
MslI CAYNNNNRTG 1 cut(s) 669
MspCI CTTAAG 1 cut(s) 191
Mva1269I GAATGC 2 cut(s) 7, 449
MvnI CGCG 4 cut(s) 144, 213, 694, 707
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeI CATATG 1 cut(s) 687
NdeII GATC 2 cut(s) 286, 679
NlaIII CATG 2 cut(s) 644, 812
NlaIV GGNNCC 2 cut(s) 288, 438
NmuCI GTSAC 2 cut(s) 206, 662
NsiI ATGCAT 2 cut(s) 313, 642
PciSI GCTCTTC 1 cut(s) 714
PctI GAATGC 2 cut(s) 7, 449
PfeI GAWTC 4 cut(s) 95, 244, 542, 623
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
PpuMI RGGWCCY 1 cut(s) 437
PsiI TTATAA 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 288, 438
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 181, 847
RsaNI GTAC 2 cut(s) 180, 846
RseI CAYNNNNRTG 1 cut(s) 669
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 5 cut(s) 192, 461, 492, 804, 819
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 286, 679
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 495
SetI ASST 5 cut(s) 425, 442, 575, 726, 851
SfaNI GCATC 2 cut(s) 298, 523
SfcI CTRYAG 1 cut(s) 568
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 191, 200
SmoI CTYRAG 2 cut(s) 191, 200
Sse9I AATT 5 cut(s) 109, 354, 488, 551, 837
SsiI CCGC 3 cut(s) 144, 211, 707
SspMI CTAG 1 cut(s) 875
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 415, 583, 736
TaiI ACGT 1 cut(s) 425
TaqI TCGA 4 cut(s) 68, 267, 383, 753
TasI AATT 5 cut(s) 109, 354, 488, 551, 837
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 4 cut(s) 95, 244, 542, 623
Tru1I TTAA 5 cut(s) 192, 461, 492, 804, 819
Tru9I TTAA 5 cut(s) 192, 461, 492, 804, 819
TseFI GTSAC 2 cut(s) 206, 662
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 206, 662
TspDTI ATGAA 2 cut(s) 615, 851
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 1 cut(s) 488
XspI CTAG 1 cut(s) 875
ZraI GACGTC 1 cut(s) 423
Zsp2I ATGCAT 2 cut(s) 313, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.