RLG00000019913

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001026
Physical Location & Seq
Reverse (-)
58461361 .. 58476158
14798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019913

Sequence Viewer

Length: 1170 bp
ATGGGTCCCTCGAGTTTGGTCAGTGTGGCCAGGGAGACTGAGAAGGGTGCGGCTGATCGGAGCGTTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACAGGGGGATTACCGGATTAGTTGGAAAGATCGGCGGATTCCATTGTAAGCATGGAACCTTCGGAAGTGAAGTTGCGACGGTGCTTGGTGGTGGCATTGTACCAGGTTCATTGGTTTTAGTTGGCGGTGATCCTGGTGCTGGCAAGAGTACACTCGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAATCATCCCGTGTTTTAAATGTCTCCGGTGAAGATAGTATTGAGCAAATTGGGAGCAAAGCTGACCGTATGGGGATTAAAACAGAGGATCTTTTCTTGTTCTCAAGTACCGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAGGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTAAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTGACGAAGAGGACTAACATCCCTGTTTTCTTGGTACTTGCAAAGCAAGCTGGTCTAAAGCTCAAAGACAATGCCATCTTCTTAAATGTTGTTAGCGGGGTGACGCTGAAAGAAACTGCCAGTGATCTTGCAATAGCCGCAGCAATTTGCAGCAGGCATGCACCACCTAGAATAAGTTATTTTGAGGTTTATTGGAGTCCCCTATTCCCAATATCACTGCATTCATTGGTGAAATTGGACACCGGTGAACTTCGCCTGGTTTCTGCGATGGATAAAAGGATAAATTCAGTGGCAAAACTGGGTTACAACACGTGCACTGTACCAAAGTCAGCTGAAAAATCTCTAAGAGGAACTCTAGGTTTCAAGGATATCAAAATTATAGGCTGCAAGAATCTGAAAGAGAGTGGTAACATACATGAGGAGGAAATCAAGGACCATGAATTGCTCGTCGGGTTCAATTTGCAAGCTGATGAGGTTGATCTTCCATATGGAAAGGTGTCAAGGGGCTTTGGAAGACAAGGTCAAAGCACCTTTTTAAGGTATTTCTTCTTCTTCTCGTCCGTTACTTATATTCATGGATGTAATCAGGGGCATTTTTTGCAGGAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

390

Amino Acids

41.78

Weight (kDa)

8.76

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_25 PF13481 62 - 136 1.1e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 50, 85, 135, 225, 654, 696
AclWI GGATC 2 cut(s) 224, 396
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 841
AcvI CACGTG 1 cut(s) 870
AfaI GTAC 5 cut(s) 201, 250, 409, 594, 879
AfiI CCNNNNNNNGG 2 cut(s) 239, 1095
AflIII ACRYGT 1 cut(s) 867
AgeI ACCGGT 1 cut(s) 800
AgsI TTSAA 4 cut(s) 91, 479, 922, 1015
AjiI CACGTC 1 cut(s) 543
AjnI CCWGG 5 cut(s) 29, 202, 232, 511, 813
AluBI AGCT 7 cut(s) 281, 295, 362, 608, 619, 890, 1025
AluI AGCT 7 cut(s) 281, 295, 362, 608, 619, 890, 1025
Alw21I GWGCWC 1 cut(s) 875
Alw26I GTCTC 4 cut(s) 29, 328, 447, 1157
Alw44I GTGCAC 1 cut(s) 871
AlwI GGATC 2 cut(s) 224, 396
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 1 cut(s) 27
ApaLI GTGCAC 1 cut(s) 871
ApeKI GCWGC 5 cut(s) 269, 553, 698, 708, 942
ApoI RAATTY 1 cut(s) 841
AsiGI ACCGGT 1 cut(s) 800
AspS9I GGNCC 2 cut(s) 5, 991
AsuHPI GGTGA 6 cut(s) 239, 341, 541, 670, 799, 815
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 2 cut(s) 5, 991
AxyI CCTNAGG 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 875
BalI TGGCCA 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 1091, 1123
BbrPI CACGTG 1 cut(s) 870
BbsI GAAGAC 1 cut(s) 1078
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 5 cut(s) 256, 540, 710, 720, 929
BccI CCATC 2 cut(s) 641, 820
BciT130I CCWGG 5 cut(s) 31, 204, 234, 513, 815
BcoDI GTCTC 4 cut(s) 29, 328, 447, 1157
BfaI CTAG 2 cut(s) 726, 914
BisI GCNGC 7 cut(s) 51, 270, 554, 696, 699, 709, 943
BlsI GCNGC 7 cut(s) 52, 271, 555, 697, 700, 710, 944
Bme1390I CCNGG 5 cut(s) 31, 204, 234, 513, 815
Bme18I GGWCC 2 cut(s) 5, 991
BmeT110I CYCGRG 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 543
BmgT120I GGNCC 2 cut(s) 5, 991
BmiI GGNNCC 4 cut(s) 6, 7, 157, 450
BmrFI CCNGG 5 cut(s) 31, 204, 234, 513, 815
BmrI ACTGGG 1 cut(s) 866
BmuI ACTGGG 1 cut(s) 866
BpiI GAAGAC 1 cut(s) 1078
BpmI CTGGAG 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 3 cut(s) 113, 326, 800
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 1095
Bse118I RCCGGY 1 cut(s) 800
Bse1I ACTGG 2 cut(s) 678, 861
Bse21I CCTNAGG 1 cut(s) 453
BseBI CCWGG 5 cut(s) 31, 204, 234, 513, 815
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 3 cut(s) 305, 576, 1142
BseLI CCNNNNNNNGG 2 cut(s) 239, 1095
BseMII CTCAG 2 cut(s) 30, 467
BseNI ACTGG 2 cut(s) 678, 861
BseRI GAGGAG 2 cut(s) 441, 992
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 5 cut(s) 256, 540, 710, 720, 929
BseYI CCCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 875
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 3 cut(s) 114, 327, 801
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 2 cut(s) 239, 1095
BsmAI GTCTC 4 cut(s) 29, 328, 447, 1157
BsmFI GGGAC 1 cut(s) 741
BsmI GAATGC 2 cut(s) 542, 778
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 447
BsoBI CYCGRG 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 875
Bsp143I GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
BspACI CCGC 6 cut(s) 50, 85, 135, 225, 654, 696
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 31, 466
BspLI GGNNCC 4 cut(s) 6, 7, 157, 450
BspPI GGATC 2 cut(s) 224, 396
BspTNI GGTCTC 1 cut(s) 447
BsrFI RCCGGY 1 cut(s) 800
BsrI ACTGG 2 cut(s) 678, 861
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
Bst2UI CCWGG 5 cut(s) 31, 204, 234, 513, 815
Bst4CI ACNGT 4 cut(s) 181, 368, 484, 877
Bst6I CTCTTC 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 1156
BstBAI YACGTR 1 cut(s) 870
BstC8I GCNNGC 5 cut(s) 241, 606, 713, 717, 1023
BstDEI CTNAG 3 cut(s) 39, 453, 902
BstENI CCTNNNNNAGG 1 cut(s) 1093
BstF5I GGATG 3 cut(s) 305, 576, 1142
BstKTI GATC 6 cut(s) 58, 132, 232, 391, 685, 1039
BstMAI GTCTC 4 cut(s) 29, 328, 447, 1157
BstMBI GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
BstMWI GCNNNNNNNGC 6 cut(s) 278, 455, 464, 605, 695, 1156
BstNI CCWGG 5 cut(s) 31, 204, 234, 513, 815
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 5 cut(s) 29, 202, 232, 511, 813
BstSLI GKGCMC 1 cut(s) 875
BstV1I GCAGC 5 cut(s) 256, 540, 710, 720, 929
BstV2I GAAGAC 1 cut(s) 1078
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu36I CCTNAGG 1 cut(s) 453
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 839
BtrI CACGTC 1 cut(s) 543
BtsCI GGATG 3 cut(s) 305, 576, 1142
BtsI GCAGTG 1 cut(s) 773
BtsIMutI CAGTG 5 cut(s) 28, 685, 773, 852, 873
Cac8I GCNNGC 5 cut(s) 241, 606, 713, 717, 1023
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 2 cut(s) 5, 991
CseI GACGC 1 cut(s) 670
CsiI ACCWGGT 1 cut(s) 202
Csp6I GTAC 5 cut(s) 200, 249, 408, 593, 878
CspAI ACCGGT 1 cut(s) 800
CviAII CATG 6 cut(s) 152, 290, 716, 974, 995, 1133
CviQI GTAC 5 cut(s) 200, 249, 408, 593, 878
DdeI CTNAG 3 cut(s) 39, 453, 902
DpnI GATC 6 cut(s) 57, 131, 231, 390, 684, 1038
DpnII GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
DraI TTTAAA 2 cut(s) 318, 492
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 928
Eco47I GGWCC 2 cut(s) 5, 991
Eco72I CACGTG 1 cut(s) 870
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 1 cut(s) 10
EcoNI CCTNNNNNAGG 1 cut(s) 1093
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 5 cut(s) 29, 202, 232, 511, 813
EcoRV GATATC 1 cut(s) 928
FaeI CATG 6 cut(s) 155, 293, 719, 977, 998, 1136
FaqI GGGAC 1 cut(s) 741
FatI CATG 6 cut(s) 151, 289, 715, 973, 994, 1132
FauI CCCGC 1 cut(s) 647
FauNDI CATATG 1 cut(s) 1045
Fnu4HI GCNGC 7 cut(s) 51, 270, 554, 696, 699, 709, 943
FokI GGATG 3 cut(s) 292, 563, 1149
Fsp4HI GCNGC 7 cut(s) 51, 270, 554, 696, 699, 709, 943
FspBI CTAG 2 cut(s) 726, 914
GluI GCNGC 7 cut(s) 51, 270, 554, 696, 699, 709, 943
GsaI CCCAGC 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 1 cut(s) 29
HapII CCGG 3 cut(s) 114, 327, 801
HgaI GACGC 1 cut(s) 670
Hin1II CATG 6 cut(s) 155, 293, 719, 977, 998, 1136
HinfI GANTC 4 cut(s) 138, 470, 754, 949
HpaII CCGG 3 cut(s) 114, 327, 801
HphI GGTGA 6 cut(s) 239, 341, 541, 670, 799, 815
Hpy166II GTNNAC 4 cut(s) 100, 251, 806, 873
Hpy188I TCNGA 3 cut(s) 60, 164, 954
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 4 cut(s) 100, 251, 806, 873
Hpy99I CGWCG 2 cut(s) 181, 1010
HpyAV CCTTC 4 cut(s) 37, 64, 169, 526
HpyCH4III ACNGT 4 cut(s) 181, 368, 484, 877
HpyCH4IV ACGT 2 cut(s) 542, 869
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 455, 464, 605, 695, 1156
HpyF3I CTNAG 3 cut(s) 39, 453, 902
HpySE526I ACGT 2 cut(s) 542, 869
Hsp92II CATG 6 cut(s) 155, 293, 719, 977, 998, 1136
KflI GGGWCCC 1 cut(s) 5
Kzo9I GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
LmnI GCTCC 3 cut(s) 60, 354, 454
Lsp1109I GCAGC 5 cut(s) 256, 540, 710, 720, 929
MabI ACCWGGT 1 cut(s) 202
MaeI CTAG 2 cut(s) 726, 914
MaeII ACGT 2 cut(s) 542, 869
MaeIII GTNAC 4 cut(s) 658, 860, 965, 1120
MalI GATC 6 cut(s) 57, 131, 231, 390, 684, 1038
MboI GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
MboII GAAGA 8 cut(s) 344, 577, 628, 1031, 1083, 1096, 1099, 1102
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 875
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 8 cut(s) 348, 462, 702, 791, 841, 933, 998, 1015
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 7 cut(s) 75, 317, 378, 491, 525, 641, 1094
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 3 cut(s) 114, 327, 801
MspR9I CCNGG 5 cut(s) 31, 204, 234, 513, 815
Mva1269I GAATGC 2 cut(s) 542, 778
MvaI CCWGG 5 cut(s) 31, 204, 234, 513, 815
MwoI GCNNNNNNNGC 6 cut(s) 278, 455, 464, 605, 695, 1156
NdeI CATATG 1 cut(s) 1045
NdeII GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
NlaIII CATG 6 cut(s) 155, 293, 719, 977, 998, 1136
NlaIV GGNNCC 4 cut(s) 6, 7, 157, 450
NmuCI GTSAC 1 cut(s) 658
NspI RCATGY 1 cut(s) 719
PaeI GCATGC 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 10
PctI GAATGC 2 cut(s) 542, 778
PfeI GAWTC 3 cut(s) 138, 470, 949
PflFI GACNNNGTC 1 cut(s) 1077
PfoI TCCNGGA 1 cut(s) 511
PinAI ACCGGT 1 cut(s) 800
PkrI GCNGC 7 cut(s) 52, 271, 555, 697, 700, 710, 944
PleI GAGTC 1 cut(s) 762
PmaCI CACGTG 1 cut(s) 870
PmlI CACGTG 1 cut(s) 870
PpsI GAGTC 1 cut(s) 762
Ppu21I YACGTR 1 cut(s) 870
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 5 cut(s) 29, 202, 232, 511, 813
PspCI CACGTG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 5 cut(s) 29, 202, 232, 511, 813
PspN4I GGNNCC 4 cut(s) 6, 7, 157, 450
PspPI GGNCC 2 cut(s) 5, 991
PspPPI RGGWCCY 1 cut(s) 5
PspXI VCTCGAGB 1 cut(s) 10
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 1077
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 5 cut(s) 201, 250, 409, 594, 879
RsaNI GTAC 5 cut(s) 200, 249, 408, 593, 878
SaqAI TTAA 7 cut(s) 75, 317, 378, 491, 525, 641, 1094
SatI GCNGC 7 cut(s) 51, 270, 554, 696, 699, 709, 943
Sau3AI GATC 6 cut(s) 55, 129, 229, 388, 682, 1036
Sau96I GGNCC 2 cut(s) 5, 991
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 5 cut(s) 31, 204, 234, 513, 815
SduI GDGCHC 1 cut(s) 875
SexAI ACCWGGT 1 cut(s) 202
Sfr274I CTCGAG 1 cut(s) 10
SgrAI CRCCGGYG 1 cut(s) 800
SinI GGWCC 2 cut(s) 5, 991
SlaI CTCGAG 1 cut(s) 10
SmlI CTYRAG 2 cut(s) 10, 403
SmoI CTYRAG 2 cut(s) 10, 403
SphI GCATGC 1 cut(s) 719
Sse9I AATT 8 cut(s) 348, 462, 702, 791, 841, 933, 998, 1015
SsiI CCGC 6 cut(s) 50, 85, 135, 225, 654, 696
SspMI CTAG 2 cut(s) 726, 914
StyD4I CCNGG 5 cut(s) 29, 202, 232, 511, 813
TaaI ACNGT 4 cut(s) 181, 368, 484, 877
TaiI ACGT 2 cut(s) 545, 872
TaqI TCGA 1 cut(s) 11
TasI AATT 8 cut(s) 348, 462, 702, 791, 841, 933, 998, 1015
TatI WGTACW 1 cut(s) 248
TauI GCSGC 2 cut(s) 53, 698
TfiI GAWTC 3 cut(s) 138, 470, 949
Tru1I TTAA 7 cut(s) 75, 317, 378, 491, 525, 641, 1094
Tru9I TTAA 7 cut(s) 75, 317, 378, 491, 525, 641, 1094
TscAI CASTG 5 cut(s) 28, 685, 780, 852, 880
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 5 cut(s) 269, 553, 698, 708, 942
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 5 cut(s) 198, 476, 771, 1011, 1121
TspGWI ACGGA 1 cut(s) 1108
TspRI CASTG 5 cut(s) 28, 685, 780, 852, 880
Tth111I GACNNNGTC 1 cut(s) 1077
VneI GTGCAC 1 cut(s) 871
VpaK11BI GGWCC 2 cut(s) 5, 991
XagI CCTNNNNNAGG 1 cut(s) 1093
XapI RAATTY 1 cut(s) 841
XceI RCATGY 1 cut(s) 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 10
XspI CTAG 2 cut(s) 726, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.