Rh2DG437600

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001026
Physical Location & Seq
Reverse (-)
63292631 .. 63297909
5279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG437600.1

Sequence Viewer

Length: 717 bp
ATGTGGTCAGTGAGATCGAGAAGGGTACGGCTGACAGGAGCGTTGGCCGGGAAGGTGAGATCAGGAACCGGGTCGGTTAGTGGGATTCGGGTCTCGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATTGGCGGATTCCATTGCATGGAACATTGGAACCTTTGGAAGTGAAGTTGCGACGGTGCTTGGTGGTGGCATTATACCAGATTGGGCATGAAACCAAATCTGGAGAGATTGCTGGACCTCGTCTTTTGGAGCATATTGTTGATGTTGTGCTCTACATAGAAGCATTATGTGTATCAGGTCTAGCAGTTGTACCTGTTGTTAATGGAATTCAAGCTAATAGAGCTTCCATCATTATTGCAGTACTTGCAAAGCAAGCTGGTCCAAAGCTCAAAGACAATGCCATCTTCTTAAATGTTGTTAGCAGGGTGATGCTGAAAGAAACTGCCAGTGATCTTGCAATAGCCGCAGCAATTTGCAGCAGGCATGTTTCTGCAATGGATAAAAGGATAGATACAGTGGCAAAACTGGGTTACAAGACGTGCATTGTACCAAAGTCAGCTGAAAAATCTGTAAGAGGAACTCTAGGTTTCGAGGATATCAAAATTATAGGCTGCAAGAATCTGAAAGAGGTCATCAACATCGTGTTTAGATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

238

Amino Acids

25.98

Weight (kDa)

10.09

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 3 cut(s) 142, 184, 522
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 384
AfaI GTAC 4 cut(s) 27, 369, 420, 606
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 148, 389
AjiI CACGTC 1 cut(s) 597
AluBI AGCT 5 cut(s) 392, 401, 434, 445, 617
AluI AGCT 5 cut(s) 392, 401, 434, 445, 617
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 97
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 524, 534, 669
ApoI RAATTY 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 293, 437
AsuC2I CCSGG 2 cut(s) 49, 70
AsuHPI GGTGA 3 cut(s) 67, 115, 496
AvaII GGWCC 2 cut(s) 293, 437
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 536, 546, 656
BccI CCATC 2 cut(s) 413, 467
BceAI ACGGC 1 cut(s) 44
BcnI CCSGG 2 cut(s) 49, 70
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 359, 641
BisI GCNGC 4 cut(s) 522, 525, 535, 670
BlsI GCNGC 4 cut(s) 523, 526, 536, 671
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 2 cut(s) 49, 70
Bme18I GGWCC 2 cut(s) 293, 437
BmgBI CACGTC 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 293, 437
BmiI GGNNCC 2 cut(s) 67, 210
BmrFI CCNGG 2 cut(s) 49, 70
BmrI ACTGGG 2 cut(s) 169, 593
BmsI GCATC 1 cut(s) 477
BmuI ACTGGG 2 cut(s) 169, 593
BpmI CTGGAG 1 cut(s) 300
BpuMI CCSGG 2 cut(s) 49, 70
BsaI GGTCTC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 164, 504, 588
Bse3DI GCAATG 2 cut(s) 191, 558
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 2 cut(s) 191, 558
BseNI ACTGG 3 cut(s) 164, 504, 588
BseXI GCAGC 3 cut(s) 536, 546, 656
BshFI GGCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 2 cut(s) 48, 69
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 14, 59, 508, 707
BspACI CCGC 3 cut(s) 142, 184, 522
BspANI GGCC 1 cut(s) 47
BspLI GGNNCC 2 cut(s) 67, 210
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 191, 558
BsrI ACTGG 3 cut(s) 164, 504, 588
BssMI GATC 4 cut(s) 14, 59, 508, 707
Bst4CI ACNGT 2 cut(s) 234, 574
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 432, 539
BstKTI GATC 4 cut(s) 17, 62, 511, 710
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 4 cut(s) 14, 59, 508, 707
BstMWI GCNNNNNNNGC 4 cut(s) 398, 422, 431, 521
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 47, 68
BstV1I GCAGC 3 cut(s) 536, 546, 656
BsuRI GGCC 1 cut(s) 47
BtrI CACGTC 1 cut(s) 597
BtsIMutI CAGTG 3 cut(s) 15, 511, 579
Cac8I GCNNGC 2 cut(s) 432, 539
Cfr13I GGNCC 2 cut(s) 293, 437
Csp6I GTAC 4 cut(s) 26, 368, 419, 605
CviAII CATG 3 cut(s) 197, 266, 542
CviQI GTAC 4 cut(s) 26, 368, 419, 605
DpnI GATC 4 cut(s) 16, 61, 510, 709
DpnII GATC 4 cut(s) 14, 59, 508, 707
EaeI YGGCCR 1 cut(s) 45
EciI GGCGGA 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 2 cut(s) 293, 437
EcoRI GAATTC 1 cut(s) 384
EcoRV GATATC 1 cut(s) 655
FaeI CATG 3 cut(s) 200, 269, 545
FaiI YATR 8 cut(s) 198, 253, 267, 312, 335, 346, 543, 665
FatI CATG 3 cut(s) 196, 265, 541
Fnu4HI GCNGC 4 cut(s) 522, 525, 535, 670
Fsp4HI GCNGC 4 cut(s) 522, 525, 535, 670
FspBI CTAG 2 cut(s) 359, 641
GluI GCNGC 4 cut(s) 522, 525, 535, 670
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 47
HapII CCGG 2 cut(s) 48, 69
Hin1II CATG 3 cut(s) 200, 269, 545
HinfI GANTC 3 cut(s) 85, 187, 676
HpaII CCGG 2 cut(s) 48, 69
HphI GGTGA 3 cut(s) 67, 115, 496
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 97, 681
Hpy188III TCNNGA 3 cut(s) 18, 63, 279
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 4 cut(s) 15, 46, 94, 121
HpyCH4III ACNGT 2 cut(s) 234, 574
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 8 cut(s) 196, 416, 425, 515, 534, 551, 600, 672
HpyF10VI GCNNNNNNNGC 4 cut(s) 398, 422, 431, 521
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 3 cut(s) 200, 269, 545
Kzo9I GATC 4 cut(s) 14, 59, 508, 707
LmnI GCTCC 2 cut(s) 38, 307
Lsp1109I GCAGC 3 cut(s) 536, 546, 656
LweI GCATC 1 cut(s) 477
MaeI CTAG 2 cut(s) 359, 641
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 587
MalI GATC 4 cut(s) 16, 61, 510, 709
MboI GATC 4 cut(s) 14, 59, 508, 707
MboII GAAGA 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 384, 528, 660
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 5 cut(s) 99, 306, 626, 643, 679
MseI TTAA 3 cut(s) 132, 378, 467
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 2 cut(s) 48, 69
MspR9I CCNGG 2 cut(s) 49, 70
MwoI GCNNNNNNNGC 4 cut(s) 398, 422, 431, 521
NciI CCSGG 2 cut(s) 49, 70
NdeII GATC 4 cut(s) 14, 59, 508, 707
NlaIII CATG 3 cut(s) 200, 269, 545
NlaIV GGNNCC 2 cut(s) 67, 210
NspI RCATGY 1 cut(s) 545
PfeI GAWTC 3 cut(s) 85, 187, 676
PflFI GACNNNGTC 1 cut(s) 297
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 4 cut(s) 523, 526, 536, 671
PspN4I GGNNCC 2 cut(s) 67, 210
PspPI GGNCC 2 cut(s) 293, 437
PsyI GACNNNGTC 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 4 cut(s) 27, 369, 420, 606
RsaNI GTAC 4 cut(s) 26, 368, 419, 605
SaqAI TTAA 3 cut(s) 132, 378, 467
SatI GCNGC 4 cut(s) 522, 525, 535, 670
Sau3AI GATC 4 cut(s) 14, 59, 508, 707
Sau96I GGNCC 2 cut(s) 293, 437
ScaI AGTACT 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 49, 70
SduI GDGCHC 1 cut(s) 330
SfaNI GCATC 1 cut(s) 477
SinI GGWCC 2 cut(s) 293, 437
Sse9I AATT 3 cut(s) 384, 528, 660
SsiI CCGC 3 cut(s) 142, 184, 522
SspMI CTAG 2 cut(s) 359, 641
StyD4I CCNGG 2 cut(s) 47, 68
TaaI ACNGT 2 cut(s) 234, 574
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 17, 648
TasI AATT 3 cut(s) 384, 528, 660
TatI WGTACW 1 cut(s) 418
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 3 cut(s) 85, 187, 676
Tru1I TTAA 3 cut(s) 132, 378, 467
Tru9I TTAA 3 cut(s) 132, 378, 467
TscAI CASTG 3 cut(s) 15, 511, 579
TseI GCWGC 3 cut(s) 524, 534, 669
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 3 cut(s) 15, 511, 579
Tth111I GACNNNGTC 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 293, 437
XapI RAATTY 1 cut(s) 384
XceI RCATGY 1 cut(s) 545
XspI CTAG 2 cut(s) 359, 641
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.