Rmu_co8164566.1_g000001

DNA repair protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8164566.1
Physical Location & Seq
Reverse (-)
1 .. 562
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8164566.1_g000001.1.cds

Sequence Viewer

Length: 190 bp
atggcttcaggactgaaagtactgagctctggcaattctactctgtggcaggtgaaggaatgcacatcagccttgctgcgttttgcgaagaggactaacatcccgattgggcatgtaaccaaatctggagagattgctggacctcgtcttttggagcatattgttgatgttgtgctctacatagaagttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.85

Weight (kDa)

9.03

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 40
AfaI GTAC 1 cut(s) 21
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw21I GWGCWC 2 cut(s) 29, 177
ApeKI GCWGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 29, 177
BbvI GCAGC 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 147
BseGI GGATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 29, 177
BsmI GAATGC 1 cut(s) 65
Bsp1286I GDGCHC 2 cut(s) 29, 177
BspCNI CTCAG 1 cut(s) 15
BspMI ACCTGC 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 20
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 5, 27, 71
CviKI_1 RGCY 3 cut(s) 5, 27, 71
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 114, 159, 182
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 147
Hin1II CATG 1 cut(s) 116
HphI GGTGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 9, 103, 126
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 116
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 15, 35, 111, 123
Lsp1109I GCAGC 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 115
MboII GAAGA 1 cut(s) 100
MhlI GDGCHC 2 cut(s) 29, 177
MluCI AATT 1 cut(s) 34
MnlI CCTC 2 cut(s) 84, 153
Mva1269I GAATGC 1 cut(s) 65
NlaIII CATG 1 cut(s) 116
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 40
PctI GAATGC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 144
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SacI GAGCTC 1 cut(s) 29
SatI GCNGC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 140
ScaI AGTACT 1 cut(s) 21
SduI GDGCHC 2 cut(s) 29, 177
SetI ASST 3 cut(s) 29, 54, 145
SgeI CNNG 9 cut(s) 21, 42, 62, 85, 115, 125, 138, 150, 156
SinI GGWCC 1 cut(s) 140
Sse9I AATT 1 cut(s) 34
SstI GAGCTC 1 cut(s) 29
TasI AATT 1 cut(s) 34
TatI WGTACW 1 cut(s) 19
TseI GCWGC 1 cut(s) 76
Tth111I GACNNNGTC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 140
XceI RCATGY 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.