Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Forward (+)

46703113 .. 46703613

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0366900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGAGGTGTAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACGATGAGGACATTGGCAACAAGAAGACTCCTTCCGAGGGAGGTAGCAGCTATGATGATTACTCAGGTGGCGGCTACAACGGTGGCTCTCGCATTGTTCTTGAGCTCAGCCTCAACTCCTCCGGATCTGCTGACATGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

105

Amino Acids

10.92

Weight (kDa)

4.34

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	296
AciI	CCGC	1 cut(s)	246
AclWI	GGATC	3 cut(s)	57, 70, 307
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	56, 212
AgsI	TTSAA	1 cut(s)	152
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	2 cut(s)	49, 141
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	2 cut(s)	225, 280
AluI	AGCT	2 cut(s)	225, 280
Alw21I	GWGCWC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	57, 70, 307
Aor13HI	TCCGGA	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	20, 222
Asp700I	GAANNNNTTC	2 cut(s)	43, 156
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	7, 234
BciT130I	CCWGG	2 cut(s)	51, 143
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	3 cut(s)	21, 223, 247
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	3 cut(s)	22, 224, 248
Bme1390I	CCNGG	2 cut(s)	51, 143
Bme18I	GGWCC	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	64, 85
BmrFI	CCNGG	2 cut(s)	51, 143
BpiI	GAAGAC	1 cut(s)	206
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	9, 296
BsaJI	CCNNGG	3 cut(s)	33, 117, 210
BsaWI	WCCGGW	1 cut(s)	296
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 212
Bse1I	ACTGG	3 cut(s)	61, 94, 103
BseAI	TCCGGA	1 cut(s)	296
BseBI	CCWGG	2 cut(s)	51, 143
BseDI	CCNNGG	3 cut(s)	33, 117, 210
BseLI	CCNNNNNNNGG	2 cut(s)	56, 212
BseMII	CTCAG	2 cut(s)	252, 295
BseNI	ACTGG	3 cut(s)	61, 94, 103
BseRI	GAGGAG	2 cut(s)	144, 283
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	7, 234
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	56, 212
Bsp1286I	GDGCHC	2 cut(s)	33, 282
Bsp13I	TCCGGA	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	62, 70, 136, 299
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	2 cut(s)	33, 117
BspACI	CCGC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	251, 294
BspEI	TCCGGA	1 cut(s)	296
BspLI	GGNNCC	2 cut(s)	64, 85
BspPI	GGATC	3 cut(s)	57, 70, 307
BsrI	ACTGG	3 cut(s)	61, 94, 103
BssECI	CCNNGG	3 cut(s)	33, 117, 210
BssMI	GATC	4 cut(s)	62, 70, 136, 299
BssT1I	CCWWGG	2 cut(s)	33, 117
Bst2UI	CCWGG	2 cut(s)	51, 143
Bst4CI	ACNGT	2 cut(s)	165, 257
BstDEI	CTNAG	2 cut(s)	238, 281
BstDSI	CCRYGG	2 cut(s)	33, 117
BstKTI	GATC	4 cut(s)	65, 73, 139, 302
BstMBI	GATC	4 cut(s)	62, 70, 136, 299
BstNI	CCWGG	2 cut(s)	51, 143
BstSCI	CCNGG	2 cut(s)	49, 141
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	7, 234
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	62, 299
BstYI	RGATCY	2 cut(s)	62, 299
BtgI	CCRYGG	2 cut(s)	33, 117
BtsIMutI	CAGTG	2 cut(s)	87, 161
Cfr13I	GGNCC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	4 cut(s)	34, 118, 172, 310
CviJI	RGCY	6 cut(s)	20, 225, 249, 261, 280, 285
CviKI_1	RGCY	6 cut(s)	20, 225, 249, 261, 280, 285
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	238, 281
DpnI	GATC	4 cut(s)	64, 72, 138, 301
DpnII	GATC	4 cut(s)	62, 70, 136, 299
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	2 cut(s)	33, 117
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	49, 141
EcoT14I	CCWWGG	2 cut(s)	33, 117
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	33, 117
FaeI	CATG	4 cut(s)	37, 121, 175, 313
FaiI	YATR	5 cut(s)	35, 119, 173, 228, 311
FatI	CATG	4 cut(s)	33, 117, 171, 309
Fnu4HI	GCNGC	3 cut(s)	21, 223, 247
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	21, 223, 247
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	3 cut(s)	21, 223, 247
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	4 cut(s)	37, 121, 175, 313
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	275, 297
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	167, 216
HpyCH4III	ACNGT	2 cut(s)	165, 257
HpyCH4V	TGCA	1 cut(s)	175
HpyF3I	CTNAG	2 cut(s)	238, 281
Hsp92II	CATG	4 cut(s)	37, 121, 175, 313
Kpn2I	TCCGGA	1 cut(s)	296
Kzo9I	GATC	4 cut(s)	62, 70, 136, 299
Lsp1109I	GCAGC	2 cut(s)	7, 234
MaeI	CTAG	1 cut(s)	42
MalI	GATC	4 cut(s)	64, 72, 138, 301
MboI	GATC	4 cut(s)	62, 70, 136, 299
MboII	GAAGA	3 cut(s)	16, 146, 211
MflI	RGATCY	2 cut(s)	62, 299
MhlI	GDGCHC	2 cut(s)	33, 282
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	6 cut(s)	122, 175, 205, 209, 296, 304
MroI	TCCGGA	1 cut(s)	296
MroXI	GAANNNNTTC	2 cut(s)	43, 156
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	51, 143
MvaI	CCWGG	2 cut(s)	51, 143
NcoI	CCATGG	2 cut(s)	33, 117
NdeII	GATC	4 cut(s)	62, 70, 136, 299
NlaIII	CATG	4 cut(s)	37, 121, 175, 313
NlaIV	GGNNCC	2 cut(s)	64, 85
PdmI	GAANNNNTTC	2 cut(s)	43, 156
PkrI	GCNGC	3 cut(s)	22, 224, 248
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	49, 141
PspGI	CCWGG	2 cut(s)	49, 141
PspN4I	GGNNCC	2 cut(s)	64, 85
PspPI	GGNCC	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	62, 299
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	282
SatI	GCNGC	3 cut(s)	21, 223, 247
Sau3AI	GATC	4 cut(s)	62, 70, 136, 299
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	2 cut(s)	51, 143
SduI	GDGCHC	2 cut(s)	33, 282
SetI	ASST	5 cut(s)	11, 220, 227, 244, 282
SinI	GGWCC	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	24, 275
SmoI	CTYRAG	2 cut(s)	24, 275
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	49, 141
StyI	CCWWGG	2 cut(s)	33, 117
TaaI	ACNGT	2 cut(s)	165, 257
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	249
TscAI	CASTG	2 cut(s)	94, 168
TseI	GCWGC	2 cut(s)	20, 222
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	94, 168
VpaK11BI	GGWCC	1 cut(s)	84
XmnI	GAANNNNTTC	2 cut(s)	43, 156
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.