Rorug02G0253200

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001026
Physical Location & Seq
Forward (+)
26519768 .. 26520346
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0253200.1

Sequence Viewer

Length: 579 bp
ATGTCGTGCACGAAATTATTCTCCACAGCTGAGAGCCACTTTGTTAAGCCATGGCACCTCTGCAAGTCCAAGGAAGTGACCGATCCACCCACTCCATGCACGCCATTGGAATGCAGCGGGTTGTGTGGAAGCTTGTATACTGGGGGGCTTGGGATATGCATTGCCGAAGTTTGCGAGTGTCTCCATTCCTGTTTTAAAGAGGGACCTCCAAGCAGAGATACCAAGCCGGCGGACGATAAAACTCCCAAAATGGTCTGGTCTTCTCCTTCTTCTAAGGATCTCAAGCCTGATCAAATCTCGAAAATGGCATTGTCTTCTTCTAAGGAGCATCTCAATCCTGAGCGACTTTCGGAAGCAGCCTTATCTTCTTCTAAGGATCATCTCAAGCCTGAGAGAATTTCCAAAGTGGCACTGTCTTCTTCTAAGGATCTCAAGCGTGATCGAATTTCCAAAGTGGCCTCGTCTTCTTCGAAGGATCAACTCAAACCTGATCGGATTTCCAAAGTGGCCTTGACTTCTCCCATCCCTATCAACAAGCCTGATCGAATTTCCAAAATAGTACCGCCTGTCCAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

192

Amino Acids

20.9

Weight (kDa)

9.03

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 137
AciI CCGC 3 cut(s) 117, 230, 563
AclWI GGATC 5 cut(s) 77, 285, 384, 435, 483
AcsI RAATTY 3 cut(s) 396, 444, 546
AfaI GTAC 1 cut(s) 561
AluBI AGCT 2 cut(s) 29, 132
AluI AGCT 2 cut(s) 29, 132
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 185
Alw44I GTGCAC 1 cut(s) 7
AlwI GGATC 5 cut(s) 77, 285, 384, 435, 483
AoxI GGCC 2 cut(s) 456, 507
ApaLI GTGCAC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 114, 356
ApoI RAATTY 3 cut(s) 396, 444, 546
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbsI GAAGAC 4 cut(s) 252, 306, 408, 456
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 126, 368
BccI CCATC 1 cut(s) 530
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 185
BisI GCNGC 2 cut(s) 115, 357
BlsI GCNGC 2 cut(s) 116, 358
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 56, 204
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 150
BpiI GAAGAC 4 cut(s) 252, 306, 408, 456
Bpu10I CCTNAGC 1 cut(s) 339
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 3 cut(s) 266, 368, 416
BsaJI CCNNGG 2 cut(s) 50, 69
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 50, 69
BseGI GGATG 1 cut(s) 522
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 3 cut(s) 21, 330, 381
BseNI ACTGG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 126, 368
BshFI GGCC 2 cut(s) 458, 509
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 2 cut(s) 458, 509
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 3 cut(s) 117, 230, 563
BspANI GGCC 2 cut(s) 458, 509
BspCNI CTCAG 3 cut(s) 22, 331, 382
BspLI GGNNCC 2 cut(s) 56, 204
BspPI GGATC 5 cut(s) 77, 285, 384, 435, 483
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 2 cut(s) 50, 69
BssMI GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
BssNAI GTATAC 1 cut(s) 138
BssT1I CCWWGG 2 cut(s) 50, 69
Bst1107I GTATAC 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 414
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 101, 228
BstDEI CTNAG 7 cut(s) 30, 273, 321, 339, 372, 390, 423
BstDSI CCRYGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 522
BstKTI GATC 9 cut(s) 85, 280, 292, 379, 430, 442, 478, 493, 544
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 126, 368
BstV2I GAAGAC 4 cut(s) 252, 306, 408, 456
BstX2I RGATCY 2 cut(s) 277, 427
BstYI RGATCY 2 cut(s) 277, 427
BstZ17I GTATAC 1 cut(s) 138
BsuRI GGCC 2 cut(s) 458, 509
BtgI CCRYGG 1 cut(s) 50
BtsCI GGATG 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 101, 228
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 560
CviAII CATG 2 cut(s) 51, 96
CviQI GTAC 1 cut(s) 560
DdeI CTNAG 7 cut(s) 30, 273, 321, 339, 372, 390, 423
DpnI GATC 9 cut(s) 84, 279, 291, 378, 429, 441, 477, 492, 543
DpnII GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
DraI TTTAAA 1 cut(s) 196
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 2 cut(s) 50, 69
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 203
EcoT14I CCWWGG 2 cut(s) 50, 69
EcoT22I ATGCAT 1 cut(s) 161
ErhI CCWWGG 2 cut(s) 50, 69
FaeI CATG 2 cut(s) 54, 99
FaiI YATR 4 cut(s) 52, 97, 138, 157
FaqI GGGAC 1 cut(s) 216
FatI CATG 2 cut(s) 50, 95
FauI CCCGC 1 cut(s) 110
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 115, 357
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 2 cut(s) 115, 357
GluI GCNGC 2 cut(s) 115, 357
HaeIII GGCC 2 cut(s) 458, 509
HapII CCGG 1 cut(s) 227
Hin1II CATG 2 cut(s) 54, 99
HindIII AAGCTT 1 cut(s) 130
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 9, 138
Hpy188I TCNGA 2 cut(s) 352, 495
Hpy188III TCNNGA 2 cut(s) 298, 338
Hpy8I GTNNAC 2 cut(s) 9, 138
HpyAV CCTTC 2 cut(s) 276, 466
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4V TGCA 5 cut(s) 9, 63, 99, 114, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 7 cut(s) 30, 273, 321, 339, 372, 390, 423
Hsp92II CATG 2 cut(s) 54, 99
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 9 cut(s) 126, 202, 240, 241, 300, 351, 402, 501, 552
Lsp1109I GCAGC 2 cut(s) 126, 368
LweI GCATC 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 76
MalI GATC 9 cut(s) 84, 279, 291, 378, 429, 441, 477, 492, 543
MboI GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
MflI RGATCY 2 cut(s) 277, 427
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 14, 396, 444, 546
MnlI CCTC 4 cut(s) 68, 193, 216, 469
Mph1103I ATGCAT 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 45, 195, 577
MslI CAYNNNNRTG 1 cut(s) 109
MspA1I CMGCKG 2 cut(s) 29, 117
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 571
NaeI GCCGGC 1 cut(s) 228
NcoI CCATGG 1 cut(s) 50
NdeII GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 2 cut(s) 54, 99
NlaIV GGNNCC 2 cut(s) 56, 204
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 161
NspV TTCGAA 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PctI GAATGC 1 cut(s) 116
PdiI GCCGGC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 116, 358
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 56, 204
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 2 cut(s) 277, 427
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 561
RsaNI GTAC 1 cut(s) 560
RseI CAYNNNNRTG 1 cut(s) 109
SaqAI TTAA 3 cut(s) 45, 195, 577
SatI GCNGC 2 cut(s) 115, 357
Sau3AI GATC 9 cut(s) 82, 277, 289, 376, 427, 439, 475, 490, 541
Sau96I GGNCC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 11
SetI ASST 5 cut(s) 31, 60, 134, 208, 490
SfaNI GCATC 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 3 cut(s) 281, 383, 431
SmoI CTYRAG 3 cut(s) 281, 383, 431
Sse9I AATT 4 cut(s) 14, 396, 444, 546
SsiI CCGC 3 cut(s) 117, 230, 563
StyI CCWWGG 2 cut(s) 50, 69
TaaI ACNGT 1 cut(s) 414
TaqI TCGA 4 cut(s) 299, 442, 470, 544
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 14, 396, 444, 546
Tru1I TTAA 3 cut(s) 45, 195, 577
Tru9I TTAA 3 cut(s) 45, 195, 577
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 114, 356
Tsp45I GTSAC 1 cut(s) 76
TspRI CASTG 1 cut(s) 417
VneI GTGCAC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 3 cut(s) 396, 444, 546
XmiI GTMKAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.