Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Reverse (-)

32807621 .. 32829608

Gene Structure 21988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG164900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGCACCCCCGAGTCGCCTCCGACCGCACAACCCCAGTCCCCTCTCCGTTAAGGCCGGCATTGACTTGATGTCGGCGCCGTTAGTGTTGAAGATTCACCAGATCACAGTGCTTAGGCTTCCACCTCCACTTGACGAGTTCGCGGCCGTTGGATTTGTTGCTGGAAATGCAATTCCAGCCCTTGAAGATCTCCTTGCAGATGCAGGTGATCATCCTCCTGTTACTCCATTGAGGTCTGCAACTGAGGATATGCTGGGAAATGATGCGTGGAGATTATACGAGTATGTCTGTAAACACTTCATAGGGACTGTATCTCCTGACTGCAAGTATGTAAGAACAAAGGCAGAATTTTCAATTGGTGGAGAGTTCTTCCATTGTGTAGGACAACGTGTTTTGGTGAAGGGATTTACTTCTATTATGCCATGGTTAGCAGTAAATGAGAAAAATCTTCCTCAATTTACAAAGGGCGAGAAAATAGAAGTTGGCAGAGTGGACCTTCATGAGGGTATGACCTCACCTCCAGAATATCTAAGTGAGAGTGAGCTAATTTCGCTTATGGAGAAGAATGGAATTGGCACGGTACAAGCTGGCAGGAAGTTGGTTCCAACTGCCTTAGGTATTACTCTAATAAGAGGCTATCAATGTATTGATCCAGATCTGTGTTTGCCAGATATCCGCAGTTTTATTGAGCAGCAGATTACTCTTGTTGCTAAGGGTCAAGCAGATCATTTTCGTGTTGTGCAGCATGTTCTACAACAGTTCCGACAAAAATACAGTTATTTTGTAAAGCAGTTGGAAGAAATTCGTCAAAAGCGAGCTGCAGAAAGATTGAGCAAAACTTCTTCGGGACCCGATCTCAGCCAGATCCCACCTATCGATAATGGAGGAATGAGAAAATCGGAGAGCGCAAATCGACTCTCTAAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGGTACTGTACCAGTTGGCGGTGATCTTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTACAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGAGTAATGAGCAAATTGGGAGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCCGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCAGTGTTCAGGTTGGAGTTTTTACTTGTAACATACCAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003916 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016853 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

Topoisom_bac Toprim

Protein Analysis

501

Amino Acids

54.85

Weight (kDa)

6.3

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_bac	PF01131	68 - 193	3.4e-30	DNA topoisomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	2 cut(s)	4, 76
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	26, 143, 676, 1054, 1146, 1167
AclWI	GGATC	3 cut(s)	644, 859, 1338
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	4 cut(s)	347, 801, 1000, 1098
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	7 cut(s)	582, 937, 1153, 1158, 1192, 1343, 1351
AfiI	CCNNNNNNNGG	4 cut(s)	502, 1017, 1109, 1166
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	5 cut(s)	91, 185, 354, 1060, 1421
AhdI	GACNNNNNGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	1453
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AloI	GAACNNNNNNTCC	2 cut(s)	1449, 1481
AluBI	AGCT	7 cut(s)	544, 587, 818, 1223, 1237, 1304, 1400
AluI	AGCT	7 cut(s)	544, 587, 818, 1223, 1237, 1304, 1400
Alw26I	GTCTC	3 cut(s)	951, 1270, 1389
AlwI	GGATC	3 cut(s)	644, 859, 1338
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	54, 144
ApeKI	GCWGC	4 cut(s)	691, 742, 818, 1211
ApoI	RAATTY	4 cut(s)	347, 801, 1000, 1098
Asp700I	GAANNNNTTC	1 cut(s)	801
AspLEI	GCGC	2 cut(s)	79, 908
AspS9I	GGNCC	2 cut(s)	493, 848
AsuHPI	GGTGA	7 cut(s)	89, 218, 409, 507, 1027, 1181, 1283
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	493, 848
AxyI	CCTNAGG	1 cut(s)	613
BanI	GGYRCC	2 cut(s)	4, 76
BbvI	GCAGC	4 cut(s)	703, 754, 805, 1198
BceAI	ACGGC	2 cut(s)	64, 131
BciT130I	CCWGG	1 cut(s)	1455
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	951, 1270, 1389
BfmI	CTRYAG	1 cut(s)	819
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	2 cut(s)	187, 655
BisI	GCNGC	5 cut(s)	144, 692, 743, 819, 1212
BlsI	GCNGC	5 cut(s)	145, 693, 744, 820, 1213
BmcAI	AGTACT	2 cut(s)	937, 1351
Bme1390I	CCNGG	1 cut(s)	1455
Bme18I	GGWCC	2 cut(s)	493, 848
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	493, 848
BmiI	GGNNCC	7 cut(s)	6, 78, 603, 849, 850, 1114, 1392
BmrFI	CCNGG	1 cut(s)	1455
BmrI	ACTGGG	2 cut(s)	30, 1081
BmsI	GCATC	3 cut(s)	190, 253, 1256
BmuI	ACTGGG	2 cut(s)	30, 1081
BpmI	CTGGAG	2 cut(s)	504, 1476
Bpu10I	CCTNAGC	2 cut(s)	113, 711
BpuEI	CTTGAG	2 cut(s)	1330, 1380
Bsa29I	ATCGAT	1 cut(s)	876
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	1389
BsaJI	CCNNGG	2 cut(s)	422, 1011
BsaWI	WCCGGW	1 cut(s)	1268
BsaXI	ACNNNNNCTCC	6 cut(s)	298, 328, 502, 532, 1449, 1479
Bsc4I	CCNNNNNNNGG	4 cut(s)	502, 1017, 1109, 1166
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	4 cut(s)	36, 987, 1076, 1160
Bse21I	CCTNAGG	1 cut(s)	613
Bse3DI	GCAATG	1 cut(s)	1103
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	1455
BseCI	ATCGAT	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	422, 1011
BseGI	GGATG	2 cut(s)	211, 1247
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	4 cut(s)	502, 1017, 1109, 1166
BseMI	GCAATG	1 cut(s)	1103
BseMII	CTCAG	3 cut(s)	234, 871, 962
BseNI	ACTGG	4 cut(s)	36, 987, 1076, 1160
BseRI	GAGGAG	1 cut(s)	1383
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	703, 754, 805, 1198
BseYI	CCCAGC	2 cut(s)	253, 1237
BsgI	GTGCAG	2 cut(s)	761, 1197
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	26, 147
BshFI	GGCC	2 cut(s)	56, 146
BshNI	GGYRCC	2 cut(s)	4, 76
BshVI	ATCGAT	1 cut(s)	876
BsiEI	CGRYCG	2 cut(s)	26, 147
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	57, 1269
BslFI	GGGAC	3 cut(s)	24, 319, 861
BslI	CCNNNNNNNGG	4 cut(s)	502, 1017, 1109, 1166
BsmAI	GTCTC	3 cut(s)	951, 1270, 1389
BsmFI	GGGAC	3 cut(s)	24, 319, 861
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	2 cut(s)	56, 146
Bso31I	GGTCTC	1 cut(s)	1389
BsoBI	CYCGRG	1 cut(s)	10
Bsp19I	CCATGG	2 cut(s)	422, 1011
BspACI	CCGC	6 cut(s)	26, 143, 676, 1054, 1146, 1167
BspANI	GGCC	2 cut(s)	56, 146
BspCNI	CTCAG	3 cut(s)	235, 870, 961
BspDI	ATCGAT	1 cut(s)	876
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	7 cut(s)	6, 78, 603, 849, 850, 1114, 1392
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	3 cut(s)	644, 859, 1338
BspT107I	GGYRCC	2 cut(s)	4, 76
BspTNI	GGTCTC	1 cut(s)	1389
BsrDI	GCAATG	1 cut(s)	1103
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	4 cut(s)	36, 987, 1076, 1160
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	422, 1011
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	2 cut(s)	422, 1011
Bst2UI	CCWGG	1 cut(s)	1455
Bst4CI	ACNGT	8 cut(s)	109, 310, 580, 759, 776, 1138, 1156, 1426
Bst6I	CTCTTC	1 cut(s)	1269
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	4 cut(s)	58, 589, 816, 1183
BstDEI	CTNAG	9 cut(s)	113, 243, 530, 613, 711, 857, 921, 948, 1175
BstDSI	CCRYGG	2 cut(s)	422, 1011
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	211, 1247
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	2 cut(s)	79, 908
BstMAI	GTCTC	3 cut(s)	951, 1270, 1389
BstMCI	CGRYCG	2 cut(s)	26, 147
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 176, 550, 1220, 1397, 1406
BstNI	CCWGG	1 cut(s)	1455
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	1 cut(s)	1453
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	703, 754, 805, 1198
BstX2I	RGATCY	4 cut(s)	187, 655, 864, 1330
BstYI	RGATCY	4 cut(s)	187, 655, 864, 1330
BstZI	CGGCCG	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	876
Bsu36I	CCTNAGG	1 cut(s)	613
BsuRI	GGCC	2 cut(s)	56, 146
BsuTUI	ATCGAT	1 cut(s)	876
BtgI	CCRYGG	2 cut(s)	422, 1011
BtgZI	GCGATG	1 cut(s)	942
BtsCI	GGATG	2 cut(s)	211, 1247
BtsI	GCAGTG	1 cut(s)	1468
BtsIMutI	CAGTG	2 cut(s)	114, 1468
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	4 cut(s)	58, 589, 816, 1183
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	2 cut(s)	79, 908
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	2 cut(s)	493, 848
ClaI	ATCGAT	1 cut(s)	876
Csp6I	GTAC	7 cut(s)	581, 936, 1152, 1157, 1191, 1342, 1350
CviAII	CATG	6 cut(s)	423, 500, 746, 1012, 1109, 1232
CviQI	GTAC	7 cut(s)	581, 936, 1152, 1157, 1191, 1342, 1350
DdeI	CTNAG	9 cut(s)	113, 243, 530, 613, 711, 857, 921, 948, 1175
DinI	GGCGCC	1 cut(s)	78
DraI	TTTAAA	2 cut(s)	1260, 1434
DriI	GACNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	1269
Eam1105I	GACNNNNNGTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	1269
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	422, 1011
Eco31I	GGTCTC	1 cut(s)	1389
Eco32I	GATATC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	493, 848
Eco52I	CGGCCG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	613
Eco88I	CYCGRG	1 cut(s)	10
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRI	GAATTC	1 cut(s)	1098
EcoRII	CCWGG	1 cut(s)	1453
EcoRV	GATATC	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	422, 1011
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
ErhI	CCWWGG	2 cut(s)	422, 1011
FaeI	CATG	6 cut(s)	426, 503, 749, 1015, 1112, 1235
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	3 cut(s)	24, 319, 861
FatI	CATG	6 cut(s)	422, 499, 745, 1011, 1108, 1231
FauNDI	CATATG	1 cut(s)	1502
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	144, 692, 743, 819, 1212
FokI	GGATG	2 cut(s)	198, 1234
Fsp4HI	GCNGC	5 cut(s)	144, 692, 743, 819, 1212
GlaI	GCGC	2 cut(s)	78, 907
GluI	GCNGC	5 cut(s)	144, 692, 743, 819, 1212
GsaI	CCCAGC	2 cut(s)	257, 1241
GsuI	CTGGAG	2 cut(s)	504, 1476
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	56, 146
HapII	CCGG	2 cut(s)	57, 1269
HhaI	GCGC	2 cut(s)	79, 908
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	426, 503, 749, 1015, 1112, 1235
Hin6I	GCGC	2 cut(s)	77, 906
HinP1I	GCGC	2 cut(s)	77, 906
HinfI	GANTC	4 cut(s)	13, 94, 915, 1412
HpaII	CCGG	2 cut(s)	57, 1269
HphI	GGTGA	7 cut(s)	89, 218, 409, 507, 1027, 1181, 1283
Hpy166II	GTNNAC	4 cut(s)	293, 493, 1069, 1193
Hpy188I	TCNGA	4 cut(s)	23, 764, 901, 951
Hpy188III	TCNNGA	6 cut(s)	317, 500, 521, 653, 846, 1204
Hpy8I	GTNNAC	4 cut(s)	293, 493, 1069, 1193
HpyAV	CCTTC	3 cut(s)	394, 506, 1033
HpyCH4III	ACNGT	8 cut(s)	109, 310, 580, 759, 776, 1138, 1156, 1426
HpyCH4IV	ACGT	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 176, 550, 1220, 1397, 1406
HpyF3I	CTNAG	9 cut(s)	113, 243, 530, 613, 711, 857, 921, 948, 1175
HpySE526I	ACGT	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	6 cut(s)	426, 503, 749, 1015, 1112, 1235
HspAI	GCGC	2 cut(s)	77, 906
KasI	GGCGCC	1 cut(s)	76
KflI	GGGWCCC	1 cut(s)	848
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	1296, 1396
Lsp1109I	GCAGC	4 cut(s)	703, 754, 805, 1198
LweI	GCATC	3 cut(s)	190, 253, 1256
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	220, 1487
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	4 cut(s)	187, 655, 864, 1330
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	2 cut(s)	22, 909
MmeI	TCCRAC	7 cut(s)	46, 130, 629, 774, 787, 1064, 1453
MroNI	GCCGGC	1 cut(s)	56
MroXI	GAANNNNTTC	1 cut(s)	801
MseI	TTAA	5 cut(s)	51, 1044, 1259, 1320, 1433
MslI	CAYNNNNRTG	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	1223
MspI	CCGG	2 cut(s)	57, 1269
MspR9I	CCNGG	1 cut(s)	1455
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	1455
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	6 cut(s)	167, 176, 550, 1220, 1397, 1406
NaeI	GCCGGC	1 cut(s)	58
NarI	GGCGCC	1 cut(s)	77
NcoI	CCATGG	2 cut(s)	422, 1011
NdeI	CATATG	1 cut(s)	1502
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	6 cut(s)	426, 503, 749, 1015, 1112, 1235
NlaIV	GGNNCC	7 cut(s)	6, 78, 603, 849, 850, 1114, 1392
NspI	RCATGY	1 cut(s)	749
PagI	TCATGA	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	811
PctI	GAATGC	1 cut(s)	979
PdiI	GCCGGC	1 cut(s)	58
PdmI	GAANNNNTTC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	94, 1412
PflMI	CCANNNNNTGG	1 cut(s)	1109
PfoI	TCCNGGA	1 cut(s)	1453
PkrI	GCNGC	5 cut(s)	145, 693, 744, 820, 1213
PleI	GAGTC	2 cut(s)	21, 909
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	2 cut(s)	21, 909
PpuMI	RGGWCCY	1 cut(s)	848
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	1453
PspFI	CCCAGC	2 cut(s)	253, 1237
PspGI	CCWGG	1 cut(s)	1453
PspN4I	GGNNCC	7 cut(s)	6, 78, 603, 849, 850, 1114, 1392
PspPI	GGNCC	2 cut(s)	493, 848
PspPPI	RGGWCCY	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	823
PsuI	RGATCY	4 cut(s)	187, 655, 864, 1330
PvuII	CAGCTG	1 cut(s)	1223
RsaI	GTAC	7 cut(s)	582, 937, 1153, 1158, 1192, 1343, 1351
RsaNI	GTAC	7 cut(s)	581, 936, 1152, 1157, 1191, 1342, 1350
RseI	CAYNNNNRTG	1 cut(s)	732
SaqAI	TTAA	5 cut(s)	51, 1044, 1259, 1320, 1433
SatI	GCNGC	5 cut(s)	144, 692, 743, 819, 1212
Sau96I	GGNCC	2 cut(s)	493, 848
ScaI	AGTACT	2 cut(s)	937, 1351
SchI	GAGTC	2 cut(s)	22, 909
ScrFI	CCNGG	1 cut(s)	1455
SfaNI	GCATC	3 cut(s)	190, 253, 1256
SfcI	CTRYAG	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	78
SinI	GGWCC	2 cut(s)	493, 848
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	1345, 1395
SmoI	CTYRAG	2 cut(s)	1345, 1395
SsiI	CCGC	6 cut(s)	26, 143, 676, 1054, 1146, 1167
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	1453
StyI	CCWWGG	2 cut(s)	422, 1011
TaaI	ACNGT	8 cut(s)	109, 310, 580, 759, 776, 1138, 1156, 1426
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	876, 913
TatI	WGTACW	4 cut(s)	935, 1190, 1341, 1349
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	94, 1412
Tru1I	TTAA	5 cut(s)	51, 1044, 1259, 1320, 1433
Tru9I	TTAA	5 cut(s)	51, 1044, 1259, 1320, 1433
TscAI	CASTG	2 cut(s)	114, 1468
TseI	GCWGC	4 cut(s)	691, 742, 818, 1211
TspDTI	ATGAA	4 cut(s)	289, 488, 1140, 1418
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	114, 1468
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	2 cut(s)	493, 848
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	4 cut(s)	347, 801, 1000, 1098
XceI	RCATGY	1 cut(s)	749
XmnI	GAANNNNTTC	1 cut(s)	801
ZrmI	AGTACT	2 cut(s)	937, 1351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.