Rh5DG203000

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001026
Physical Location & Seq
Reverse (-)
22408457 .. 22415772
7316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG203000.1

Sequence Viewer

Length: 876 bp
ATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCGAATTCCATTGCATGGAACCTTTGGAAATGAAGTTGCTACGGGGCTTGGCGGTGGTACTGTACCAGCTGAAAGACATGAGCTGGGTAAGGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGGTTAGCGTTTTCCTAAGCCTGAGTAGTGAGCAAATTGGGGGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTTTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGAGCAGTGGTTGTTTTGGATGTTATGGCAGGATGGAAGGCCGCGATGACTGGTGGGGCCGGGCTTACTGGTGGCAGCGGCAATGTGGAGGTCAAAAGTGACTCAATTAGTGAAGGGAGTTCGGATTTTGATCTGGAATCAAATGGGTCACTGCCCTTTTACATGCTTGATGCTTACGAAGAGTTCTATGGACCTAATATGGGCACTGTTTATCTATTTGGGAAGGTTAAAGTAGGAAGTTCATATCAGAGTTGTTGTGCGGTTGTAAAGAACATGCAAAGATGCCCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

291

Amino Acids

31.47

Weight (kDa)

5.3

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 626
AciI CCGC 5 cut(s) 166, 258, 624, 660, 842
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 2 cut(s) 112, 210
AfaI GTAC 5 cut(s) 49, 265, 270, 416, 424
AfiI CCNNNNNNNGG 3 cut(s) 129, 221, 782
AgsI TTSAA 2 cut(s) 172, 494
AjiI CACGTC 1 cut(s) 558
AjnI CCWGG 1 cut(s) 526
AloI GAACNNNNNNTCC 2 cut(s) 522, 554
AluBI AGCT 4 cut(s) 275, 289, 377, 473
AluI AGCT 4 cut(s) 275, 289, 377, 473
Alw26I GTCTC 2 cut(s) 63, 322
AlwI GGATC 1 cut(s) 411
AoxI GGCC 2 cut(s) 621, 639
ApeKI GCWGC 2 cut(s) 568, 657
ApoI RAATTY 2 cut(s) 112, 210
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 639, 773
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 3 cut(s) 139, 335, 556
AvaII GGWCC 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 788
BbvI GCAGC 2 cut(s) 555, 669
BccI CCATC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 63, 322
BisI GCNGC 4 cut(s) 569, 624, 658, 661
BlsI GCNGC 4 cut(s) 570, 625, 659, 662
BmcAI AGTACT 2 cut(s) 49, 424
Bme1390I CCNGG 2 cut(s) 528, 643
Bme18I GGWCC 1 cut(s) 773
BmgBI CACGTC 1 cut(s) 558
BmgT120I GGNCC 2 cut(s) 639, 773
BmiI GGNNCC 3 cut(s) 226, 465, 640
BmrFI CCNGG 2 cut(s) 528, 643
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 3 cut(s) 308, 742, 854
BmuI ACTGGG 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 344
BpuEI CTTGAG 2 cut(s) 403, 453
BpuMI CCSGG 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 711
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 221, 782
Bse1I ACTGG 4 cut(s) 99, 188, 637, 655
Bse3DI GCAATG 2 cut(s) 215, 670
Bse8I GATNNNNATC 1 cut(s) 711
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 3 cut(s) 299, 607, 620
BseJI GATNNNNATC 1 cut(s) 711
BseLI CCNNNNNNNGG 3 cut(s) 129, 221, 782
BseMI GCAATG 2 cut(s) 215, 670
BseMII CTCAG 3 cut(s) 24, 74, 341
BseNI ACTGG 4 cut(s) 99, 188, 637, 655
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 2 cut(s) 555, 669
BseYI CCCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 626
BshFI GGCC 2 cut(s) 623, 641
BsiSI CCGG 2 cut(s) 321, 642
BslI CCNNNNNNNGG 3 cut(s) 129, 221, 782
BsmAI GTCTC 2 cut(s) 63, 322
BsmI GAATGC 2 cut(s) 91, 557
BsnI GGCC 2 cut(s) 623, 641
Bsp1286I GDGCHC 1 cut(s) 788
Bsp143I GATC 4 cut(s) 202, 379, 403, 712
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 5 cut(s) 166, 258, 624, 660, 842
BspANI GGCC 2 cut(s) 623, 641
BspCNI CTCAG 3 cut(s) 25, 73, 342
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 3 cut(s) 226, 465, 640
BspPI GGATC 1 cut(s) 411
BsrDI GCAATG 2 cut(s) 215, 670
BsrI ACTGG 4 cut(s) 99, 188, 637, 655
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 202, 379, 403, 712
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 268, 499, 790
Bst6I CTCTTC 3 cut(s) 321, 575, 756
BstDEI CTNAG 4 cut(s) 33, 60, 344, 350
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 3 cut(s) 299, 607, 620
BstFNI CGCG 1 cut(s) 626
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 4 cut(s) 205, 382, 406, 715
BstMAI GTCTC 2 cut(s) 63, 322
BstMBI GATC 4 cut(s) 202, 379, 403, 712
BstMWI GCNNNNNNNGC 3 cut(s) 470, 479, 584
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 2 cut(s) 748, 859
BstSCI CCNGG 2 cut(s) 526, 641
BstSLI GKGCMC 1 cut(s) 788
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 2 cut(s) 555, 669
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 623, 641
BtgI CCRYGG 1 cut(s) 123
BtgZI GCGATG 2 cut(s) 54, 641
BtrI CACGTC 1 cut(s) 558
BtsCI GGATG 3 cut(s) 299, 607, 620
BtsI GCAGTG 2 cut(s) 594, 731
BtsIMutI CAGTG 3 cut(s) 594, 731, 786
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 639, 773
Csp6I GTAC 5 cut(s) 48, 264, 269, 415, 423
CviAII CATG 5 cut(s) 124, 221, 284, 745, 856
CviQI GTAC 5 cut(s) 48, 264, 269, 415, 423
DdeI CTNAG 4 cut(s) 33, 60, 344, 350
DpnI GATC 4 cut(s) 204, 381, 405, 714
DpnII GATC 4 cut(s) 202, 379, 403, 712
DraI TTTAAA 2 cut(s) 312, 507
Eam1104I CTCTTC 3 cut(s) 321, 575, 756
EarI CTCTTC 3 cut(s) 321, 575, 756
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 5 cut(s) 127, 224, 287, 748, 859
FatI CATG 5 cut(s) 123, 220, 283, 744, 855
Fnu4HI GCNGC 4 cut(s) 569, 624, 658, 661
FokI GGATG 3 cut(s) 286, 614, 627
Fsp4HI GCNGC 4 cut(s) 569, 624, 658, 661
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 569, 624, 658, 661
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 623, 641
HapII CCGG 2 cut(s) 321, 642
HhaI GCGC 1 cut(s) 20
Hin1II CATG 5 cut(s) 127, 224, 287, 748, 859
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 4 cut(s) 27, 485, 683, 719
HpaII CCGG 2 cut(s) 321, 642
HphI GGTGA 3 cut(s) 139, 335, 556
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 5 cut(s) 13, 34, 63, 706, 831
Hpy188III TCNNGA 1 cut(s) 716
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 5 cut(s) 145, 541, 613, 689, 799
HpyCH4III ACNGT 3 cut(s) 268, 499, 790
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 4 cut(s) 89, 220, 555, 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 470, 479, 584
HpyF3I CTNAG 4 cut(s) 33, 60, 344, 350
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 5 cut(s) 127, 224, 287, 748, 859
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 4 cut(s) 202, 379, 403, 712
LmnI GCTCC 1 cut(s) 469
Lsp1109I GCAGC 2 cut(s) 555, 669
LweI GCATC 3 cut(s) 308, 742, 854
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 2 cut(s) 680, 729
MalI GATC 4 cut(s) 204, 381, 405, 714
MboI GATC 4 cut(s) 202, 379, 403, 712
MboII GAAGA 5 cut(s) 94, 110, 338, 592, 773
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 788
MluCI AATT 5 cut(s) 112, 210, 363, 477, 687
MlyI GAGTC 2 cut(s) 21, 677
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 8 cut(s) 123, 322, 394, 427, 439, 477, 524, 664
MseI TTAA 5 cut(s) 156, 311, 393, 506, 810
MspA1I CMGCKG 2 cut(s) 275, 660
MspI CCGG 2 cut(s) 321, 642
MspR9I CCNGG 2 cut(s) 528, 643
Mva1269I GAATGC 2 cut(s) 91, 557
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 626
MwoI GCNNNNNNNGC 3 cut(s) 470, 479, 584
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 123
NdeII GATC 4 cut(s) 202, 379, 403, 712
NlaIII CATG 5 cut(s) 127, 224, 287, 748, 859
NlaIV GGNNCC 3 cut(s) 226, 465, 640
NmuCI GTSAC 2 cut(s) 680, 729
NspI RCATGY 2 cut(s) 748, 859
PctI GAATGC 2 cut(s) 91, 557
PfeI GAWTC 2 cut(s) 485, 719
PflMI CCANNNNNTGG 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 526
PkrI GCNGC 4 cut(s) 570, 625, 659, 662
PleI GAGTC 2 cut(s) 21, 677
PpsI GAGTC 2 cut(s) 21, 677
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 3 cut(s) 226, 465, 640
PspPI GGNCC 2 cut(s) 639, 773
PsuI RGATCY 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 5 cut(s) 49, 265, 270, 416, 424
RsaNI GTAC 5 cut(s) 48, 264, 269, 415, 423
SaqAI TTAA 5 cut(s) 156, 311, 393, 506, 810
SatI GCNGC 4 cut(s) 569, 624, 658, 661
Sau3AI GATC 4 cut(s) 202, 379, 403, 712
Sau96I GGNCC 2 cut(s) 639, 773
ScaI AGTACT 2 cut(s) 49, 424
SchI GAGTC 2 cut(s) 21, 677
ScrFI CCNGG 2 cut(s) 528, 643
SduI GDGCHC 1 cut(s) 788
SfaNI GCATC 3 cut(s) 308, 742, 854
SinI GGWCC 1 cut(s) 773
SmlI CTYRAG 2 cut(s) 418, 468
SmoI CTYRAG 2 cut(s) 418, 468
Sse9I AATT 5 cut(s) 112, 210, 363, 477, 687
SsiI CCGC 5 cut(s) 166, 258, 624, 660, 842
StyD4I CCNGG 2 cut(s) 526, 641
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 268, 499, 790
TaiI ACGT 1 cut(s) 560
TaqI TCGA 1 cut(s) 25
TasI AATT 5 cut(s) 112, 210, 363, 477, 687
TatI WGTACW 3 cut(s) 47, 414, 422
TauI GCSGC 2 cut(s) 626, 663
TfiI GAWTC 2 cut(s) 485, 719
Tru1I TTAA 5 cut(s) 156, 311, 393, 506, 810
Tru9I TTAA 5 cut(s) 156, 311, 393, 506, 810
TscAI CASTG 3 cut(s) 594, 738, 793
TseFI GTSAC 2 cut(s) 680, 729
TseI GCWGC 2 cut(s) 568, 657
Tsp45I GTSAC 2 cut(s) 680, 729
TspDTI ATGAA 3 cut(s) 252, 491, 813
TspRI CASTG 3 cut(s) 594, 738, 793
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 2 cut(s) 112, 210
XceI RCATGY 2 cut(s) 748, 859
ZrmI AGTACT 2 cut(s) 49, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.