RchiOBHm_Chr2g0141091

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001026
Physical Location & Seq
Reverse (-)
58654507 .. 58657527
3021 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51142

Sequence Viewer

Length: 735 bp
ATGTGGTCAGTGAGATCGAGAAGGGTACGGCTGACAGGAGCGTTGGCCGGGAAGGTGAGATCAGGAACCGGGTCGGTTAGTGGGATTCGGGTCTCGGAGAAGGTGAGGTCTTGGTTGCCAAGTGGGAAGGTTAAGCCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATTGGCGGATTCCATTGCATGGAACATTGGAACCTTTGGAAGTGAAGTTGCGACGGTGCTTGGTGGTGGCATTATACCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCTGGTGAAGAGAGTATTGAGCAAATTGGGAGCAAAGCTGACCGTATGGGGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAGGCCCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGACTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACATCAGCCTTGCTGCGTTTTGCGAAGAGGACTAACATCCCGGTTTTCTTGATTGGGCATGAAACCAAATCTGGAGAGATTGCTGGACCTCGTCTTTTGGAGCATATTGTTGATGTTGTGCTCTACATAGAAGAAGAAGCACTCATCCTATCGTTTACTTCGACTGTGAAAAATCGTTTTGGATCCACTGATGAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

8.87

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 197
AciI CCGC 2 cut(s) 142, 184
AclWI GGATC 3 cut(s) 390, 711, 724
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 3 cut(s) 27, 395, 403
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 148, 473
AhdI GACNNNNNGTC 1 cut(s) 501
AjnI CCWGG 1 cut(s) 505
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 3 cut(s) 275, 289, 356
AluI AGCT 3 cut(s) 275, 289, 356
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 3 cut(s) 97, 322, 441
AlwI GGATC 3 cut(s) 390, 711, 724
AoxI GGCC 2 cut(s) 45, 450
ApeKI GCWGC 2 cut(s) 263, 547
AspS9I GGNCC 2 cut(s) 451, 620
AsuC2I CCSGG 3 cut(s) 49, 70, 575
AsuHPI GGTGA 4 cut(s) 67, 115, 335, 535
AvaII GGWCC 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 447
BamHI GGATCC 1 cut(s) 716
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 2 cut(s) 250, 534
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 507
BcnI CCSGG 3 cut(s) 49, 70, 575
BcoDI GTCTC 3 cut(s) 97, 322, 441
BisI GCNGC 2 cut(s) 264, 548
BlsI GCNGC 2 cut(s) 265, 549
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 4 cut(s) 49, 70, 507, 575
Bme18I GGWCC 1 cut(s) 620
BmeRI GACNNNNNGTC 1 cut(s) 501
BmgT120I GGNCC 2 cut(s) 451, 620
BmiI GGNNCC 4 cut(s) 67, 210, 444, 718
BmrFI CCNGG 4 cut(s) 49, 70, 507, 575
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 169
BpmI CTGGAG 2 cut(s) 528, 627
BpuEI CTTGAG 1 cut(s) 382
BpuMI CCSGG 3 cut(s) 49, 70, 575
BsaI GGTCTC 2 cut(s) 97, 441
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 164, 502
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 507
BseGI GGATG 3 cut(s) 299, 570, 678
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 2 cut(s) 164, 502
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 250, 534
BseYI CCCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 47, 452
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 3 cut(s) 48, 69, 575
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 3 cut(s) 97, 322, 441
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 2 cut(s) 47, 452
Bso31I GGTCTC 2 cut(s) 97, 441
Bsp1286I GDGCHC 1 cut(s) 657
Bsp143I GATC 4 cut(s) 14, 59, 382, 716
BspACI CCGC 2 cut(s) 142, 184
BspANI GGCC 2 cut(s) 47, 452
BspCNI CTCAG 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 67, 210, 444, 718
BspPI GGATC 3 cut(s) 390, 711, 724
BspTNI GGTCTC 2 cut(s) 97, 441
BsrDI GCAATG 1 cut(s) 191
BsrI ACTGG 2 cut(s) 164, 502
BssMI GATC 4 cut(s) 14, 59, 382, 716
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 4 cut(s) 234, 362, 478, 700
Bst6I CTCTTC 2 cut(s) 321, 554
BstDEI CTNAG 1 cut(s) 447
BstF5I GGATG 3 cut(s) 299, 570, 678
BstKTI GATC 4 cut(s) 17, 62, 385, 719
BstMAI GTCTC 3 cut(s) 97, 322, 441
BstMBI GATC 4 cut(s) 14, 59, 382, 716
BstMWI GCNNNNNNNGC 3 cut(s) 272, 449, 458
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 4 cut(s) 47, 68, 505, 573
BstV1I GCAGC 2 cut(s) 250, 534
BstX2I RGATCY 2 cut(s) 382, 716
BstYI RGATCY 2 cut(s) 382, 716
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 2 cut(s) 47, 452
BtsCI GGATG 3 cut(s) 299, 570, 678
BtsIMutI CAGTG 2 cut(s) 15, 720
Cfr13I GGNCC 2 cut(s) 451, 620
Csp6I GTAC 3 cut(s) 26, 394, 402
CviAII CATG 3 cut(s) 197, 284, 593
CviJI RGCY 9 cut(s) 31, 47, 136, 275, 289, 356, 443, 452, 542
CviKI_1 RGCY 9 cut(s) 31, 47, 136, 275, 289, 356, 443, 452, 542
CviQI GTAC 3 cut(s) 26, 394, 402
DdeI CTNAG 1 cut(s) 447
DpnI GATC 4 cut(s) 16, 61, 384, 718
DpnII GATC 4 cut(s) 14, 59, 382, 716
DraI TTTAAA 2 cut(s) 312, 486
DriI GACNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 321, 554
Eam1105I GACNNNNNGTC 1 cut(s) 501
EarI CTCTTC 2 cut(s) 321, 554
EciI GGCGGA 1 cut(s) 199
Eco31I GGTCTC 2 cut(s) 97, 441
Eco47I GGWCC 1 cut(s) 620
Eco81I CCTNAGG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 505
FaeI CATG 3 cut(s) 200, 287, 596
FatI CATG 3 cut(s) 196, 283, 592
Fnu4HI GCNGC 2 cut(s) 264, 548
FokI GGATG 3 cut(s) 286, 557, 665
Fsp4HI GCNGC 2 cut(s) 264, 548
GluI GCNGC 2 cut(s) 264, 548
GsaI CCCAGC 1 cut(s) 293
GsuI CTGGAG 2 cut(s) 528, 627
HaeIII GGCC 2 cut(s) 47, 452
HapII CCGG 3 cut(s) 48, 69, 575
Hin1II CATG 3 cut(s) 200, 287, 596
HinfI GANTC 3 cut(s) 85, 187, 464
HpaII CCGG 3 cut(s) 48, 69, 575
HphI GGTGA 4 cut(s) 67, 115, 335, 535
Hpy166II GTNNAC 2 cut(s) 157, 690
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 18, 63, 583, 606
Hpy8I GTNNAC 2 cut(s) 157, 690
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 5 cut(s) 15, 46, 94, 121, 520
HpyCH4III ACNGT 4 cut(s) 234, 362, 478, 700
HpyCH4V TGCA 3 cut(s) 196, 266, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 449, 458
HpyF3I CTNAG 1 cut(s) 447
Hsp92II CATG 3 cut(s) 200, 287, 596
Kzo9I GATC 4 cut(s) 14, 59, 382, 716
LmnI GCTCC 4 cut(s) 38, 348, 448, 634
Lsp1109I GCAGC 2 cut(s) 250, 534
LweI GCATC 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 493
MalI GATC 4 cut(s) 16, 61, 384, 718
MboI GATC 4 cut(s) 14, 59, 382, 716
MboII GAAGA 4 cut(s) 338, 571, 677, 680
MflI RGATCY 2 cut(s) 382, 716
MhlI GDGCHC 1 cut(s) 657
MluCI AATT 2 cut(s) 342, 456
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 9 cut(s) 99, 373, 406, 418, 456, 503, 555, 633, 721
MseI TTAA 4 cut(s) 132, 311, 372, 485
MspI CCGG 3 cut(s) 48, 69, 575
MspR9I CCNGG 4 cut(s) 49, 70, 507, 575
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 3 cut(s) 272, 449, 458
NciI CCSGG 3 cut(s) 49, 70, 575
NdeII GATC 4 cut(s) 14, 59, 382, 716
NlaIII CATG 3 cut(s) 200, 287, 596
NlaIV GGNNCC 4 cut(s) 67, 210, 444, 718
NmuCI GTSAC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 3 cut(s) 85, 187, 464
PflFI GACNNNGTC 1 cut(s) 624
PflMI CCANNNNNTGG 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 2 cut(s) 265, 549
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 289
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 4 cut(s) 67, 210, 444, 718
PspPI GGNCC 2 cut(s) 451, 620
PsuI RGATCY 2 cut(s) 382, 716
PsyI GACNNNGTC 1 cut(s) 624
RsaI GTAC 3 cut(s) 27, 395, 403
RsaNI GTAC 3 cut(s) 26, 394, 402
SaqAI TTAA 4 cut(s) 132, 311, 372, 485
SatI GCNGC 2 cut(s) 264, 548
Sau3AI GATC 4 cut(s) 14, 59, 382, 716
Sau96I GGNCC 2 cut(s) 451, 620
ScaI AGTACT 1 cut(s) 403
ScrFI CCNGG 4 cut(s) 49, 70, 507, 575
SduI GDGCHC 1 cut(s) 657
SfaNI GCATC 1 cut(s) 308
SinI GGWCC 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 397
SmoI CTYRAG 1 cut(s) 397
Sse9I AATT 2 cut(s) 342, 456
SsiI CCGC 2 cut(s) 142, 184
StyD4I CCNGG 4 cut(s) 47, 68, 505, 573
TaaI ACNGT 4 cut(s) 234, 362, 478, 700
TaqI TCGA 2 cut(s) 17, 695
TasI AATT 2 cut(s) 342, 456
TatI WGTACW 2 cut(s) 393, 401
TfiI GAWTC 3 cut(s) 85, 187, 464
Tru1I TTAA 4 cut(s) 132, 311, 372, 485
Tru9I TTAA 4 cut(s) 132, 311, 372, 485
TscAI CASTG 2 cut(s) 15, 727
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 2 cut(s) 263, 547
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 2 cut(s) 470, 609
TspRI CASTG 2 cut(s) 15, 727
Tth111I GACNNNGTC 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.