Rh6BG232700

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001026
Physical Location & Seq
Reverse (-)
43839928 .. 43842232
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG232700.1

Sequence Viewer

Length: 258 bp
ATGAATGTAGGGCGTTTGAATATGTCTCATGGGGACTATACGTCGCACCAGAAAACTATTGATCTTGTCAAAGAATACAACTCTCAATTCAAAGACAAGGTTATAGCCATAATGTTGGACACCAAGAAAAAGACTGATTATCTCAAAGGTTGTAATGCAGATATTCATGTTATCCTTCTCGAATTCACTGAGCTCTGCTTTCCTTCGGCTCATCGCTGCTTCTACTCGCGCCGGAGGTGCAGATATCAGCGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

85

Amino Acids

10.11

Weight (kDa)

9.16

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK PF00224 1 - 54 3.2e-09 Pyruvate kinase, barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 229
AciI CCGC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 182
AgsI TTSAA 2 cut(s) 19, 91
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 216
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 1 cut(s) 217
BlsI GCNGC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 40
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 203
Bsh1236I CGCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 195
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 250
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 229
BssMI GATC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 189
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 197
BtsIMutI CAGTG 1 cut(s) 186
CfoI GCGC 1 cut(s) 231
CviAII CATG 2 cut(s) 29, 167
CviJI RGCY 3 cut(s) 107, 193, 209
CviKI_1 RGCY 3 cut(s) 107, 193, 209
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DriI GACNNNNNGTC 1 cut(s) 40
Eam1105I GACNNNNNGTC 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 2 cut(s) 32, 170
FaiI YATR 6 cut(s) 23, 30, 39, 104, 110, 168
FaqI GGGAC 1 cut(s) 47
FatI CATG 2 cut(s) 28, 166
FauI CCCGC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 217
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 217
HapII CCGG 1 cut(s) 232
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 32, 170
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HpaII CCGG 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 185, 213
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 158, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 2 cut(s) 32, 170
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 62, 245
Lsp1109I GCAGC 1 cut(s) 203
MaeII ACGT 1 cut(s) 41
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 2 cut(s) 86, 182
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 228
MseI TTAA 1 cut(s) 256
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 32, 170
PkrI GCNGC 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 195
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 256
SatI GCNGC 1 cut(s) 217
Sau3AI GATC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 195
SetI ASST 5 cut(s) 44, 102, 151, 195, 239
Sse9I AATT 2 cut(s) 86, 182
SsiI CCGC 1 cut(s) 250
SstI GAGCTC 1 cut(s) 195
TaiI ACGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 86, 182
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 216
TspDTI ATGAA 2 cut(s) 17, 155
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.