Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Reverse (-)

63299438 .. 63301874

Gene Structure 2437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG437700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTCACAATCAGGATTACAAGCTGTTTCAAATCCCGGTGGGATGTTTCTAGGGGAACAGTTCTCAGATTCAGAGTATTTGGCTGGTATAGCAGTTGCTGTGACAATGGATGGATCTCGAAGTTTCCTCATTGAGATTCAGGCATTATGTGTATCGGGTCAAGCAGTATTACAGCAAGTTAATGGAATTCAAGCTGGTAGAGCTTCCATGATTATTTCAGTACTTGCAAAGCAAGCTGGTCTAAAGCTCCAAGAGAATGCCATCTACTTAAATGTTGTTAGTGGGGTGATGCTGAAAGAAACTGCTGGTGATCTTGCAATAGCCGCAGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCCAATAGCACTGCGTTCATTGGTGAAATTGGACTATGTGGTGAACTTCGCCCGGTTTCTGCAATGGATAAAAGGATAAATACAGTGGCAAAACTGGGTTACAAGACGTGCATTGTGCCAAAGTCAACCGAAAAATCTCTAAGAGGAACTCCAGGTTTCGAGGATATGAAAATTATAGGCTGCAAGAATCTGAAAGAGGTCATCAACAATGTGTTCAGATCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

195

Amino Acids

20.62

Weight (kDa)

7.56

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lon_C	PF05362	72 - 192	3.7e-09	Lon protease (S16) C-terminal proteolytic domain
ChlI	PF13541	76 - 162	1.6e-10	Subunit ChlI of Mg-chelatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	186
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	30, 191
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	5 cut(s)	23, 194, 203, 236, 247
AluI	AGCT	5 cut(s)	23, 194, 203, 236, 247
AlwI	GGATC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	326, 336, 540
ApoI	RAATTY	1 cut(s)	186
AsuC2I	CCSGG	2 cut(s)	36, 413
AsuHPI	GGTGA	4 cut(s)	298, 320, 395, 413
BbvI	GCAGC	3 cut(s)	338, 348, 527
BccI	CCATC	2 cut(s)	104, 269
BciT130I	CCWGG	1 cut(s)	513
BcnI	CCSGG	2 cut(s)	36, 413
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	324, 327, 337, 541
BlsI	GCNGC	4 cut(s)	325, 328, 338, 542
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	3 cut(s)	36, 413, 513
BmgBI	CACGTC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	36, 413, 513
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	495
BpuMI	CCSGG	2 cut(s)	36, 413
Bse1I	ACTGG	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	48, 115
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	459
BseXI	GCAGC	3 cut(s)	338, 348, 527
BsiSI	CCGG	2 cut(s)	36, 413
BsmI	GAATGC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	113, 310, 578
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	77
BspPI	GGATC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	459
BssMI	GATC	3 cut(s)	113, 310, 578
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	60, 445
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	64, 500
BstF5I	GGATG	2 cut(s)	48, 115
BstKTI	GATC	3 cut(s)	116, 313, 581
BstMBI	GATC	3 cut(s)	113, 310, 578
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 200, 233, 323
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	3 cut(s)	34, 411, 511
BstV1I	GCAGC	3 cut(s)	338, 348, 527
BstX2I	RGATCY	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	48, 115
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 450
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	98
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	8 cut(s)	23, 83, 194, 203, 236, 247, 323, 540
CviKI_1	RGCY	8 cut(s)	23, 83, 194, 203, 236, 247, 323, 540
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	64, 500
DpnI	GATC	3 cut(s)	115, 312, 580
DpnII	GATC	3 cut(s)	113, 310, 578
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	511
FaeI	CATG	1 cut(s)	211
FaiI	YATR	6 cut(s)	89, 148, 209, 397, 527, 536
FatI	CATG	1 cut(s)	207
Fnu4HI	GCNGC	4 cut(s)	324, 327, 337, 541
FokI	GGATG	2 cut(s)	55, 122
Fsp4HI	GCNGC	4 cut(s)	324, 327, 337, 541
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	4 cut(s)	324, 327, 337, 541
GsuI	CTGGAG	1 cut(s)	495
HapII	CCGG	2 cut(s)	36, 413
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	486
HindII	GTYRAC	1 cut(s)	486
HinfI	GANTC	3 cut(s)	68, 136, 547
HpaII	CCGG	2 cut(s)	36, 413
HphI	GGTGA	4 cut(s)	298, 320, 395, 413
Hpy166II	GTNNAC	2 cut(s)	404, 486
Hpy188I	TCNGA	4 cut(s)	67, 73, 552, 578
Hpy188III	TCNNGA	2 cut(s)	12, 117
Hpy8I	GTNNAC	2 cut(s)	404, 486
HpyCH4III	ACNGT	2 cut(s)	60, 445
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	227, 317, 336, 422, 471, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 200, 233, 323
HpyF3I	CTNAG	2 cut(s)	64, 500
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	113, 310, 578
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	3 cut(s)	338, 348, 527
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	3 cut(s)	3, 100, 458
MalI	GATC	3 cut(s)	115, 312, 580
MboI	GATC	3 cut(s)	113, 310, 578
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	5 cut(s)	186, 330, 387, 531, 583
MnlI	CCTC	4 cut(s)	137, 497, 514, 550
MseI	TTAA	2 cut(s)	180, 269
MspI	CCGG	2 cut(s)	36, 413
MspR9I	CCNGG	3 cut(s)	36, 413, 513
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	89, 200, 233, 323
NciI	CCSGG	2 cut(s)	36, 413
NdeII	GATC	3 cut(s)	113, 310, 578
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	3, 100
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	68, 136, 547
PkrI	GCNGC	4 cut(s)	325, 328, 338, 542
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	113
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	180, 269
SatI	GCNGC	4 cut(s)	324, 327, 337, 541
Sau3AI	GATC	3 cut(s)	113, 310, 578
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	3 cut(s)	36, 413, 513
SetI	ASST	8 cut(s)	25, 196, 205, 238, 249, 470, 517, 561
SfaNI	GCATC	1 cut(s)	279
Sse9I	AATT	5 cut(s)	186, 330, 387, 531, 583
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	34, 411, 511
TaaI	ACNGT	2 cut(s)	60, 445
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	118, 519
TasI	AATT	5 cut(s)	186, 330, 387, 531, 583
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	68, 136, 547
Tru1I	TTAA	2 cut(s)	180, 269
Tru9I	TTAA	2 cut(s)	180, 269
TscAI	CASTG	2 cut(s)	376, 450
TseFI	GTSAC	2 cut(s)	3, 100
TseI	GCWGC	3 cut(s)	326, 336, 540
Tsp45I	GTSAC	2 cut(s)	3, 100
TspDTI	ATGAA	2 cut(s)	367, 542
TspRI	CASTG	2 cut(s)	376, 450
XapI	RAATTY	1 cut(s)	186
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.