RLG00000009042

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001026
Physical Location & Seq
Forward (+)
45478769 .. 45481695
2927 bp
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UTR
Exon/CDS
Intron
RLM00000009042

Sequence Viewer

Length: 468 bp
ATGGACTTCGATAACCTTCTCGAGTTCAAGGACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGGTCTTCTCTTCTCTTCGATTTGGTATTTAGGAAATTGGATGATATTTTGACTGATGTGAACTGGAGAAGGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGTCTAGTTCTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

156

Amino Acids

16.72

Weight (kDa)

5.18

Isoelectric Point (pI)

46.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 180, 189
AclWI GGATC 1 cut(s) 188
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 28, 359
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 1 cut(s) 391
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 245, 259, 338
AluI AGCT 3 cut(s) 245, 259, 338
Alw26I GTCTC 2 cut(s) 292, 327
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 233, 433
AsuHPI GGTGA 3 cut(s) 203, 305, 421
AvaI CYCGRG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 220, 420
BciT130I CCWGG 1 cut(s) 393
BcoDI GTCTC 2 cut(s) 292, 327
BfaI CTAG 2 cut(s) 198, 453
BisI GCNGC 2 cut(s) 234, 434
BlsI GCNGC 2 cut(s) 235, 435
Bme1390I CCNGG 1 cut(s) 393
BmeT110I CYCGRG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 423
BmiI GGNNCC 2 cut(s) 148, 330
BmrFI CCNGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 154, 414
BpuEI CTTGAG 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 115, 269
BseLI CCNNNNNNNGG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 2 cut(s) 35, 321
BseXI GCAGC 2 cut(s) 220, 420
BseYI CCCAGC 1 cut(s) 259
BsgI GTGCAG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 292, 327
BsmI GAATGC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 180, 189
BspLI GGNNCC 2 cut(s) 148, 330
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 137
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 172, 364
Bst6I CTCTTC 4 cut(s) 84, 89, 291, 440
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 115, 269
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 292, 327
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 4 cut(s) 186, 242, 335, 344
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 220, 420
BstV2I GAAGAC 1 cut(s) 66
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 2 cut(s) 115, 269
Cac8I GCNNGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 213
CviAII CATG 2 cut(s) 143, 254
CviJI RGCY 6 cut(s) 245, 259, 329, 338, 383, 428
CviKI_1 RGCY 6 cut(s) 245, 259, 329, 338, 383, 428
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 2 cut(s) 282, 372
Eam1104I CTCTTC 4 cut(s) 84, 89, 291, 440
EarI CTCTTC 4 cut(s) 84, 89, 291, 440
Eco31I GGTCTC 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 391
FaeI CATG 2 cut(s) 146, 257
FaiI YATR 4 cut(s) 144, 242, 255, 305
FatI CATG 2 cut(s) 142, 253
Fnu4HI GCNGC 2 cut(s) 234, 434
FokI GGATG 2 cut(s) 122, 256
Fsp4HI GCNGC 2 cut(s) 234, 434
FspBI CTAG 2 cut(s) 198, 453
GluI GCNGC 2 cut(s) 234, 434
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 2 cut(s) 154, 414
HapII CCGG 1 cut(s) 291
Hin1II CATG 2 cut(s) 146, 257
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 291
HphI GGTGA 3 cut(s) 203, 305, 421
Hpy166II GTNNAC 2 cut(s) 130, 215
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 20, 226
Hpy8I GTNNAC 2 cut(s) 130, 215
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 26, 132, 406
HpyCH4III ACNGT 2 cut(s) 172, 364
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 2 cut(s) 236, 420
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 242, 335, 344
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 2 cut(s) 146, 257
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 2 cut(s) 220, 420
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 198, 453
MaeII ACGT 1 cut(s) 422
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 5 cut(s) 66, 71, 76, 308, 457
MluCI AATT 2 cut(s) 104, 342
MnlI CCTC 7 cut(s) 56, 63, 292, 304, 342, 389, 441
MseI TTAA 2 cut(s) 281, 371
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 393
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 186, 242, 335, 344
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 146, 257
NlaIV GGNNCC 2 cut(s) 148, 330
PaeR7I CTCGAG 1 cut(s) 20
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 2 cut(s) 235, 435
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 2 cut(s) 148, 330
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 281, 371
SatI GCNGC 2 cut(s) 234, 434
Sau3AI GATC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 393
SetI ASST 9 cut(s) 18, 70, 152, 247, 261, 340, 411, 425, 452
SfaNI GCATC 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 20, 333
SmoI CTYRAG 2 cut(s) 20, 333
Sse9I AATT 2 cut(s) 104, 342
SsiI CCGC 2 cut(s) 180, 189
SspMI CTAG 2 cut(s) 198, 453
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 172, 364
TaiI ACGT 1 cut(s) 425
TaqI TCGA 3 cut(s) 9, 21, 87
TasI AATT 2 cut(s) 104, 342
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 281, 371
Tru9I TTAA 2 cut(s) 281, 371
TseI GCWGC 2 cut(s) 233, 433
TspDTI ATGAA 2 cut(s) 174, 356
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 2 cut(s) 198, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.