RLG00000002993

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001026
Physical Location & Seq
Forward (+)
42751411 .. 42754872
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002993

Sequence Viewer

Length: 525 bp
ATGGACTTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGGTGGGTCTTCTCTTCTCTTCGATTTGGTGAGATCTTGGTTGCCAAGTGGGAAGGTTAAGTCTGTGCGGTTGAATGATGTGAACTGGGGGATTAGTTGGAAAGATCGGCAAATTCCATTGCATGGAACCTTTGGCAATGAAGTTGCTGCGGTGCTTGGCGGTGGTACTGTACCAGTTGGTGGTGATCCTAGTCCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGGATATATTAGAGGAAAGTTGGTCTCTAGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGTCTAGTTCTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

175

Amino Acids

18.65

Weight (kDa)

6.3

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 188, 245
AciI CCGC 3 cut(s) 133, 215, 225
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 177
AfaI GTAC 3 cut(s) 232, 237, 271
AfiI CCNNNNNNNGG 3 cut(s) 188, 245, 260
AgsI TTSAA 3 cut(s) 28, 139, 416
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 2 cut(s) 259, 448
AloI GAACNNNNNNTCC 2 cut(s) 444, 476
AluBI AGCT 4 cut(s) 302, 316, 386, 395
AluI AGCT 4 cut(s) 302, 316, 386, 395
Alw26I GTCTC 2 cut(s) 349, 384
AlwI GGATC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 212, 290, 490
ApoI RAATTY 1 cut(s) 177
AsuHPI GGTGA 4 cut(s) 106, 260, 362, 478
AvaI CYCGRG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 199, 277, 477
BciT130I CCWGG 2 cut(s) 261, 450
BcoDI GTCTC 2 cut(s) 349, 384
BfaI CTAG 3 cut(s) 255, 383, 510
BglII AGATCT 1 cut(s) 98
BisI GCNGC 3 cut(s) 213, 291, 491
BlsI GCNGC 3 cut(s) 214, 292, 492
Bme1390I CCNGG 2 cut(s) 261, 450
BmeT110I CYCGRG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 2 cut(s) 261, 450
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 245, 260
Bse1I ACTGG 2 cut(s) 155, 239
Bse3DI GCAATG 2 cut(s) 182, 208
BseBI CCWGG 2 cut(s) 261, 450
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 3 cut(s) 188, 245, 260
BseMI GCAATG 2 cut(s) 182, 208
BseNI ACTGG 2 cut(s) 155, 239
BseRI GAGGAG 2 cut(s) 35, 378
BseXI GCAGC 3 cut(s) 199, 277, 477
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 3 cut(s) 188, 245, 260
BsmAI GTCTC 2 cut(s) 349, 384
BsmI GAATGC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 3 cut(s) 98, 169, 250
BspACI CCGC 3 cut(s) 133, 215, 225
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 384
BsrDI GCAATG 2 cut(s) 182, 208
BsrI ACTGG 2 cut(s) 155, 239
BssMI GATC 3 cut(s) 98, 169, 250
Bst2UI CCWGG 2 cut(s) 261, 450
Bst4CI ACNGT 2 cut(s) 235, 421
Bst6I CTCTTC 4 cut(s) 84, 89, 348, 497
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 3 cut(s) 101, 172, 253
BstMAI GTCTC 2 cut(s) 349, 384
BstMBI GATC 3 cut(s) 98, 169, 250
BstMWI GCNNNNNNNGC 3 cut(s) 299, 392, 401
BstNI CCWGG 2 cut(s) 261, 450
BstSCI CCNGG 2 cut(s) 259, 448
BstV1I GCAGC 3 cut(s) 199, 277, 477
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 1 cut(s) 326
Csp6I GTAC 3 cut(s) 231, 236, 270
CviAII CATG 2 cut(s) 188, 311
CviJI RGCY 6 cut(s) 302, 316, 386, 395, 440, 485
CviKI_1 RGCY 6 cut(s) 302, 316, 386, 395, 440, 485
CviQI GTAC 3 cut(s) 231, 236, 270
DdeI CTNAG 1 cut(s) 59
DpnI GATC 3 cut(s) 100, 171, 252
DpnII GATC 3 cut(s) 98, 169, 250
DraI TTTAAA 2 cut(s) 339, 429
Eam1104I CTCTTC 4 cut(s) 84, 89, 348, 497
EarI CTCTTC 4 cut(s) 84, 89, 348, 497
Eco31I GGTCTC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 259, 448
FaeI CATG 2 cut(s) 191, 314
FaiI YATR 4 cut(s) 189, 299, 312, 362
FatI CATG 2 cut(s) 187, 310
Fnu4HI GCNGC 3 cut(s) 213, 291, 491
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 3 cut(s) 213, 291, 491
FspBI CTAG 3 cut(s) 255, 383, 510
GluI GCNGC 3 cut(s) 213, 291, 491
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 471
HapII CCGG 1 cut(s) 348
Hin1II CATG 2 cut(s) 191, 314
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 348
HphI GGTGA 4 cut(s) 106, 260, 362, 478
Hpy166II GTNNAC 2 cut(s) 148, 272
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 3 cut(s) 20, 28, 283
Hpy8I GTNNAC 2 cut(s) 148, 272
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 26, 112, 463
HpyCH4III ACNGT 2 cut(s) 235, 421
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 3 cut(s) 187, 293, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 392, 401
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 479
Hsp92II CATG 2 cut(s) 191, 314
Kzo9I GATC 3 cut(s) 98, 169, 250
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 3 cut(s) 199, 277, 477
LweI GCATC 1 cut(s) 335
MaeI CTAG 3 cut(s) 255, 383, 510
MaeII ACGT 1 cut(s) 479
MalI GATC 3 cut(s) 100, 171, 252
MboI GATC 3 cut(s) 98, 169, 250
MboII GAAGA 5 cut(s) 66, 71, 76, 365, 514
MflI RGATCY 1 cut(s) 98
MluCI AATT 2 cut(s) 177, 399
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 7 cut(s) 56, 63, 349, 361, 399, 446, 498
MseI TTAA 3 cut(s) 123, 338, 428
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 261, 450
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 2 cut(s) 261, 450
MwoI GCNNNNNNNGC 3 cut(s) 299, 392, 401
NdeII GATC 3 cut(s) 98, 169, 250
NlaIII CATG 2 cut(s) 191, 314
NlaIV GGNNCC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 20
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 407
PflMI CCANNNNNTGG 2 cut(s) 188, 245
PfoI TCCNGGA 1 cut(s) 448
PkrI GCNGC 3 cut(s) 214, 292, 492
Psp6I CCWGG 2 cut(s) 259, 448
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 2 cut(s) 259, 448
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 3 cut(s) 232, 237, 271
RsaNI GTAC 3 cut(s) 231, 236, 270
SaqAI TTAA 3 cut(s) 123, 338, 428
SatI GCNGC 3 cut(s) 213, 291, 491
Sau3AI GATC 3 cut(s) 98, 169, 250
ScrFI CCNGG 2 cut(s) 261, 450
SfaNI GCATC 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 20, 390
SmoI CTYRAG 2 cut(s) 20, 390
Sse9I AATT 2 cut(s) 177, 399
SsiI CCGC 3 cut(s) 133, 215, 225
SspMI CTAG 3 cut(s) 255, 383, 510
StyD4I CCNGG 2 cut(s) 259, 448
TaaI ACNGT 2 cut(s) 235, 421
TaiI ACGT 1 cut(s) 482
TaqI TCGA 3 cut(s) 9, 21, 87
TasI AATT 2 cut(s) 177, 399
TatI WGTACW 1 cut(s) 269
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 3 cut(s) 123, 338, 428
Tru9I TTAA 3 cut(s) 123, 338, 428
TseI GCWGC 3 cut(s) 212, 290, 490
TspDTI ATGAA 2 cut(s) 219, 413
Van91I CCANNNNNTGG 2 cut(s) 188, 245
XapI RAATTY 1 cut(s) 177
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 3 cut(s) 255, 383, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.