Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Forward (+)

74757374 .. 74762948

Gene Structure 5575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTTTGGTTCCTTTTTGAGTTGGGAAAATGATTTTGATAATTCTGTAAATGTTTTTGTGGTTGATATTAGGAATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGGTACTGTACCAGTTGGCAGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCTCGTGTTTTAAATGTCTCCGGTGAAGAGATTGAAAATGTGGCTGAAAGCCTGAAAGACTTTGGTTGTGGAGCTGAAGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGCCTCATTTGAGCAAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGTATTGCTCGCACTTTCTTGCTGTCTAAACTCACTCAGTCCTTGGCTGCTTTAAACAATTTTAGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

172

Amino Acids

18.28

Weight (kDa)

4.8

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	118, 123, 157
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	248, 350
AjnI	CCWGG	1 cut(s)	382
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	4 cut(s)	188, 202, 287, 329
AluI	AGCT	4 cut(s)	188, 202, 287, 329
Alw26I	GTCTC	2 cut(s)	235, 318
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	2 cut(s)	176, 494
AsuHPI	GGTGA	1 cut(s)	248
BauI	CACGAG	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	163, 481
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	235, 318
BfaI	CTAG	2 cut(s)	141, 431
BisI	GCNGC	2 cut(s)	177, 495
BlsI	GCNGC	2 cut(s)	178, 496
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	3 cut(s)	10, 79, 321
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	312
BseXI	GCAGC	2 cut(s)	163, 481
BseYI	CCCAGC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	2 cut(s)	235, 318
BsnI	GGCC	1 cut(s)	401
Bso31I	GGTCTC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	10, 79, 321
BspPI	GGATC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	3 cut(s)	103, 121, 355
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	148, 414, 457
BstDEI	CTNAG	1 cut(s)	483
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	2 cut(s)	235, 318
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 326, 335
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	163, 481
BsuRI	GGCC	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	3 cut(s)	148, 414, 457
Csp6I	GTAC	3 cut(s)	117, 122, 156
CviAII	CATG	1 cut(s)	197
CviQI	GTAC	3 cut(s)	117, 122, 156
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraI	TTTAAA	3 cut(s)	225, 363, 501
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	1 cut(s)	200
FaiI	YATR	4 cut(s)	185, 198, 296, 517
FatI	CATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	177, 495
Fsp4HI	GCNGC	2 cut(s)	177, 495
FspBI	CTAG	2 cut(s)	141, 431
GluI	GCNGC	2 cut(s)	177, 495
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	158
HpyCH4III	ACNGT	3 cut(s)	103, 121, 355
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 326, 335
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	2 cut(s)	284, 325
Lsp1109I	GCAGC	2 cut(s)	163, 481
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	141, 431
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	2 cut(s)	251, 302
MluCI	AATT	3 cut(s)	40, 333, 505
MnlI	CCTC	4 cut(s)	295, 333, 380, 412
MseI	TTAA	3 cut(s)	224, 362, 500
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	185, 326, 335
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	3 cut(s)	10, 79, 321
PceI	AGGCCT	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	178, 496
Psp6I	CCWGG	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	10, 79, 321
RsaI	GTAC	3 cut(s)	118, 123, 157
RsaNI	GTAC	3 cut(s)	117, 122, 156
SaqAI	TTAA	3 cut(s)	224, 362, 500
SatI	GCNGC	2 cut(s)	177, 495
Sau3AI	GATC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	384
SetI	ASST	6 cut(s)	83, 190, 204, 289, 331, 451
SfaNI	GCATC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
Sse9I	AATT	3 cut(s)	40, 333, 505
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	2 cut(s)	141, 431
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	3 cut(s)	103, 121, 355
TasI	AATT	3 cut(s)	40, 333, 505
TatI	WGTACW	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	224, 362, 500
Tru9I	TTAA	3 cut(s)	224, 362, 500
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	2 cut(s)	176, 494
TspDTI	ATGAA	2 cut(s)	105, 347
TspRI	CASTG	1 cut(s)	139
XspI	CTAG	2 cut(s)	141, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.