Rroxscaffold_7G00190730

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001026
Physical Location & Seq
Reverse (-)
30995831 .. 31001423
5593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00190730.1

Sequence Viewer

Length: 234 bp
ATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCCGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

77

Amino Acids

8.42

Weight (kDa)

4.95

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 27
AfaI GTAC 2 cut(s) 32, 40
AgsI TTSAA 1 cut(s) 110
AjiI CACGTC 1 cut(s) 174
AjnI CCWGG 1 cut(s) 142
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 27
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 172
BbvI GCAGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 232
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 19, 69
BsaI GGTCTC 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
BseBI CCWGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 1 cut(s) 202
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 78
BssMI GATC 1 cut(s) 19
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 202
BtrI CACGTC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 215
Csp6I GTAC 2 cut(s) 31, 39
CviJI RGCY 5 cut(s) 80, 89, 134, 179, 202
CviKI_1 RGCY 5 cut(s) 80, 89, 134, 179, 202
CviQI GTAC 2 cut(s) 31, 39
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 142
FaiI YATR 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 232
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 202
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpySE526I ACGT 1 cut(s) 173
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 62, 120, 129, 143, 156
Lsp1109I GCAGC 1 cut(s) 171
MaeI CTAG 1 cut(s) 232
MaeII ACGT 1 cut(s) 173
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 208
MflI RGATCY 1 cut(s) 19
MluCI AATT 1 cut(s) 93
MnlI CCTC 7 cut(s) 10, 43, 55, 93, 140, 192, 213
MseI TTAA 2 cut(s) 9, 122
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 81
PceI AGGCCT 1 cut(s) 202
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 2 cut(s) 32, 40
RsaNI GTAC 2 cut(s) 31, 39
SaqAI TTAA 2 cut(s) 9, 122
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 19
ScaI AGTACT 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 144
SetI ASST 3 cut(s) 91, 162, 176
SmlI CTYRAG 2 cut(s) 34, 84
SmoI CTYRAG 2 cut(s) 34, 84
Sse9I AATT 1 cut(s) 93
SseBI AGGCCT 1 cut(s) 202
SspMI CTAG 1 cut(s) 232
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 176
TasI AATT 1 cut(s) 93
TatI WGTACW 2 cut(s) 30, 38
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 9, 122
Tru9I TTAA 2 cut(s) 9, 122
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 107
XspI CTAG 1 cut(s) 232
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.