Rorug02G0367000

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001026
Physical Location & Seq
Reverse (-)
46713377 .. 46715814
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0367000.1

Sequence Viewer

Length: 1530 bp
ATGGCATCTGAAAAGGCATTCTTGCTTTCTAGGATTGAACAATTGGAAGCAAGAGTTGATGTAAGGAGCCATGAGGTAGTTACCACTGTTGGAGAAGCAAAAGTTGTAGTCAATGACCACACATCTGGGCAAGCAAGTTGTTCACATGCGGTAGATTCATGTCTCAAGGCTGCTAACAAACAAGACAATGTTGTGGAAGATGGTGCAATGACAAATCTGTTGGATGTGATGGAGAGACAGTTGCTGCAAAATCAGAGGAAGAAGACTTCAAAGGTCAAGAAGTCCAACATTGATTTTGAAGCAGCAATTGAAGAAGTTGCCCATGAAGATAATGCCGGAAAGAATCAGGTGCATGTTGATGGGGTGATAAATGATAATGAGGAAATGGAATCGGTGGATTTGACCTTGCTAGATAAAAGAACAAAGGTAAATCCTACTGAGAAGAAATGCAAGTTAGCATTGGGTTCAGCTGACCATATTGTTGCTCTTGCAACGGTTATGACAAGCGATGGTCCATTAGAAGTTTGTCATGGGACTCCATTGGGAGATGACAGATTACGTGTTTCTGTTTATGCTGCTTTGGAGGAAAAGGCTGTGATTCCATTTGTTGTAGAAGATGAGATTACGACAGTAAAGCAAGCTATGGGGAGCTGGGTAATGTGGCCGAAAAACCTGATCATATTTGATGAAAAGAAAAAAGCAAGTGGTAAAGCAAGTAGGAAGCAGAAAAGGAATCAGTTTACGGAAGATGTAGAAGAAGAGTTTGACTTGCAGTCACTCGAATTAAGCTTGCCAGCCGCATTGCAGAAGTTATGTCAGTGGGGAAAAGAAGGATTCAAAGATAGGAAAGCTGTTTGCTTTTATAAAGAAGAGCGGGTATTTGGTATTAATGCTAAGAGCTATCTACTTGACTTGGATGTTAAGAGGCTTGCAAACATGGCAGAAGTAACAGGAACCCTTATAGTGTTGTACATGAGGTACTTATATGATGTACTAAAAGAGTCTATGATGCTAGACATGGTTGGTTTCATTGACCCAGCATTGATTGGTGAGATAGGGTGTGGGAGTGCAACAACGAGGTCCCGAAGTATAAAAGATCGCCTGATAAGTTCTTCTCCAAATCAGATTTTCTTGTTGCCTTACAATGCATCTGCTCATTGGATATTAACTGTGATTGATCCGGACAATGAGACTGTCTATTACATGGATCCATTAAAAAGACGCCTTGGGGGTAACGGAGAATGGAAAGATATTGTTGACACTGCCATATCAATGTTTAGAGGGGACCGCAACAAGAAAGGACGGGGTTCTATTCAATGGAAGAACATGGCAGGTATTCCATCACAGCCAAACGACAAACAGTGCGGCTATTTTGTGATGAGATATATGAGGGACATCATATATGATACAAACTTGGGTTTTGCAGATAAGTGGGGTAGGAGAGCCAACCATGTTTATTGTCAAGTGGAAATTGATGAAGTGCGTAATGAGCTCGCAAGTTATGTGGTGAAGAACATCCTCAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

509

Amino Acids

57.33

Weight (kDa)

5.97

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8039 PF26133 147 - 228 7.1e-11 Domain of unknown function (DUF8039)
Peptidase_C48 PF02902 375 - 475 1.5e-08 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 864
Acc36I ACCTGC 1 cut(s) 1322
AccBSI CCGCTC 1 cut(s) 874
AccIII TCCGGA 1 cut(s) 1180
AciI CCGC 5 cut(s) 149, 798, 874, 1288, 1365
AclWI GGATC 3 cut(s) 1172, 1202, 1215
AcoI YGGCCR 1 cut(s) 662
AcyI GRCGYC 1 cut(s) 1222
AfaI GTAC 3 cut(s) 971, 980, 993
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 6 cut(s) 38, 270, 299, 311, 838, 1316
AhdI GACNNNNNGTC 1 cut(s) 772
AluBI AGCT 7 cut(s) 470, 641, 651, 789, 851, 900, 1492
AluI AGCT 7 cut(s) 470, 641, 651, 789, 851, 900, 1492
Alw21I GWGCWC 1 cut(s) 1494
Alw26I GTCTC 3 cut(s) 167, 229, 1184
AlwI GGATC 3 cut(s) 1172, 1202, 1215
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 1180
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 4 cut(s) 170, 244, 302, 575
AseI ATTAAT 1 cut(s) 888
AspS9I GGNCC 3 cut(s) 512, 1080, 1285
AsuHPI GGTGA 3 cut(s) 376, 1061, 1519
AvaII GGWCC 3 cut(s) 512, 1080, 1285
BamHI GGATCC 1 cut(s) 1207
BanII GRGCYC 1 cut(s) 1494
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 1494
BbvI GCAGC 4 cut(s) 157, 231, 314, 562
BccI CCATC 5 cut(s) 194, 223, 353, 503, 1348
BclI TGATCA 1 cut(s) 675
BcoDI GTCTC 3 cut(s) 167, 229, 1184
BfaI CTAG 3 cut(s) 30, 410, 1013
BfuAI ACCTGC 1 cut(s) 1322
BisI GCNGC 6 cut(s) 171, 245, 303, 576, 798, 1366
BlsI GCNGC 6 cut(s) 172, 246, 304, 577, 799, 1367
Bme18I GGWCC 3 cut(s) 512, 1080, 1285
BmeRI GACNNNNNGTC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 512, 1080, 1285
BmiI GGNNCC 5 cut(s) 68, 955, 1082, 1209, 1286
BmsI GCATC 3 cut(s) 14, 999, 1157
BpiI GAAGAC 1 cut(s) 269
BpuEI CTTGAG 2 cut(s) 149, 1505
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 1222
BsaJI CCNNGG 1 cut(s) 1225
BsaWI WCCGGW 1 cut(s) 1180
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse3DI GCAATG 2 cut(s) 213, 800
BseAI TCCGGA 1 cut(s) 1180
BseDI CCNNGG 1 cut(s) 1225
BseGI GGATG 3 cut(s) 229, 922, 1515
BseMI GCAATG 2 cut(s) 213, 800
BseMII CTCAG 1 cut(s) 429
BseXI GCAGC 4 cut(s) 157, 231, 314, 562
BseYI CCCAGC 2 cut(s) 651, 1036
BshFI GGCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 1494
BsiSI CCGG 2 cut(s) 336, 1181
BslFI GGGAC 4 cut(s) 547, 1066, 1298, 1406
BsmAI GTCTC 3 cut(s) 167, 229, 1184
BsmFI GGGAC 4 cut(s) 547, 1066, 1298, 1406
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 1494
Bsp13I TCCGGA 1 cut(s) 1180
Bsp1407I TGTACA 1 cut(s) 969
Bsp143I GATC 4 cut(s) 675, 1096, 1177, 1207
BspACI CCGC 5 cut(s) 149, 798, 874, 1288, 1365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 430
BspEI TCCGGA 1 cut(s) 1180
BspLI GGNNCC 5 cut(s) 68, 955, 1082, 1209, 1286
BspMI ACCTGC 1 cut(s) 1322
BspPI GGATC 3 cut(s) 1172, 1202, 1215
BspQI GCTCTTC 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 874
BsrDI GCAATG 2 cut(s) 213, 800
BsrGI TGTACA 1 cut(s) 969
BssECI CCNNGG 1 cut(s) 1225
BssMI GATC 4 cut(s) 675, 1096, 1177, 1207
BssNI GRCGYC 1 cut(s) 1222
BssT1I CCWWGG 1 cut(s) 1225
Bst4CI ACNGT 7 cut(s) 88, 240, 496, 631, 1171, 1195, 1362
Bst6I CTCTTC 2 cut(s) 753, 864
BstACI GRCGYC 1 cut(s) 1222
BstAUI TGTACA 1 cut(s) 969
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 6 cut(s) 132, 639, 791, 795, 930, 1494
BstDEI CTNAG 2 cut(s) 438, 894
BstF5I GGATG 3 cut(s) 229, 922, 1515
BstKTI GATC 4 cut(s) 678, 1099, 1180, 1210
BstMAI GTCTC 3 cut(s) 167, 229, 1184
BstMBI GATC 4 cut(s) 675, 1096, 1177, 1207
BstMWI GCNNNNNNNGC 2 cut(s) 938, 1489
BstNSI RCATGY 2 cut(s) 149, 356
BstV1I GCAGC 4 cut(s) 157, 231, 314, 562
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 1207
BstXI CCANNNNNNTGG 1 cut(s) 125
BstYI RGATCY 1 cut(s) 1207
BsuRI GGCC 1 cut(s) 664
BtgZI GCGATG 1 cut(s) 522
BtsCI GGATG 3 cut(s) 229, 922, 1515
BtsI GCAGTG 1 cut(s) 1260
BtsIMutI CAGTG 4 cut(s) 84, 824, 1260, 1367
BveI ACCTGC 1 cut(s) 1322
Cac8I GCNNGC 6 cut(s) 132, 639, 791, 795, 930, 1494
CaiI CAGNNNCTG 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 512, 1080, 1285
CseI GACGC 1 cut(s) 1230
Csp6I GTAC 3 cut(s) 970, 979, 992
CspCI CAANNNNNGTGG 2 cut(s) 1485, 1520
CviQI GTAC 3 cut(s) 970, 979, 992
DdeI CTNAG 2 cut(s) 438, 894
DpnI GATC 4 cut(s) 677, 1098, 1179, 1209
DpnII GATC 4 cut(s) 675, 1096, 1177, 1207
DriI GACNNNNNGTC 1 cut(s) 772
EaeI YGGCCR 1 cut(s) 662
Eam1104I CTCTTC 2 cut(s) 753, 864
Eam1105I GACNNNNNGTC 1 cut(s) 772
EarI CTCTTC 2 cut(s) 753, 864
Ecl136II GAGCTC 1 cut(s) 1492
Eco130I CCWWGG 1 cut(s) 1225
Eco24I GRGCYC 1 cut(s) 1494
Eco47I GGWCC 3 cut(s) 512, 1080, 1285
Eco53kI GAGCTC 1 cut(s) 1492
EcoICRI GAGCTC 1 cut(s) 1492
EcoO109I RGGNCCY 1 cut(s) 1080
EcoT14I CCWWGG 1 cut(s) 1225
EcoT22I ATGCAT 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 1494
ErhI CCWWGG 1 cut(s) 1225
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 4 cut(s) 547, 1066, 1298, 1406
FauI CCCGC 1 cut(s) 867
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 6 cut(s) 171, 245, 303, 576, 798, 1366
FokI GGATG 3 cut(s) 236, 929, 1502
FriOI GRGCYC 1 cut(s) 1494
Fsp4HI GCNGC 6 cut(s) 171, 245, 303, 576, 798, 1366
FspBI CTAG 3 cut(s) 30, 410, 1013
GluI GCNGC 6 cut(s) 171, 245, 303, 576, 798, 1366
GsaI CCCAGC 2 cut(s) 655, 1040
HaeIII GGCC 1 cut(s) 664
HapII CCGG 2 cut(s) 336, 1181
HgaI GACGC 1 cut(s) 1230
Hin1I GRCGYC 1 cut(s) 1222
HincII GTYRAC 1 cut(s) 1258
HindII GTYRAC 1 cut(s) 1258
HindIII AAGCTT 1 cut(s) 787
HinfI GANTC 8 cut(s) 155, 343, 389, 535, 598, 733, 834, 1001
HpaII CCGG 2 cut(s) 336, 1181
HphI GGTGA 3 cut(s) 376, 1061, 1519
Hpy166II GTNNAC 3 cut(s) 143, 741, 1258
Hpy188I TCNGA 3 cut(s) 10, 255, 1125
Hpy188III TCNNGA 3 cut(s) 277, 1083, 1181
Hpy8I GTNNAC 3 cut(s) 143, 741, 1258
HpyAV CCTTC 1 cut(s) 824
HpyCH4III ACNGT 7 cut(s) 88, 240, 496, 631, 1171, 1195, 1362
HpyCH4IV ACGT 1 cut(s) 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 938, 1489
HpyF3I CTNAG 2 cut(s) 438, 894
HpySE526I ACGT 1 cut(s) 559
Hsp92I GRCGYC 1 cut(s) 1222
Kpn2I TCCGGA 1 cut(s) 1180
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 4 cut(s) 675, 1096, 1177, 1207
LguI GCTCTTC 1 cut(s) 864
LmnI GCTCC 2 cut(s) 66, 648
Lsp1109I GCAGC 4 cut(s) 157, 231, 314, 562
LweI GCATC 3 cut(s) 14, 999, 1157
MaeI CTAG 3 cut(s) 30, 410, 1013
MaeII ACGT 1 cut(s) 559
MaeIII GTNAC 4 cut(s) 79, 774, 946, 1232
MalI GATC 4 cut(s) 677, 1098, 1179, 1209
MbiI CCGCTC 1 cut(s) 874
MboI GATC 4 cut(s) 675, 1096, 1177, 1207
MfeI CAATTG 2 cut(s) 41, 306
MflI RGATCY 1 cut(s) 1207
MhlI GDGCHC 1 cut(s) 1494
MluCI AATT 4 cut(s) 41, 306, 782, 1470
MlyI GAGTC 2 cut(s) 529, 1010
MmeI TCCRAC 3 cut(s) 70, 201, 309
Mph1103I ATGCAT 1 cut(s) 1150
MroI TCCGGA 1 cut(s) 1180
MseI TTAA 5 cut(s) 785, 888, 921, 1166, 1214
MslI CAYNNNNRTG 2 cut(s) 357, 1271
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 336, 1181
MunI CAATTG 2 cut(s) 41, 306
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 938, 1489
NdeII GATC 4 cut(s) 675, 1096, 1177, 1207
NlaIV GGNNCC 5 cut(s) 68, 955, 1082, 1209, 1286
NmuCI GTSAC 1 cut(s) 774
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 2 cut(s) 149, 356
PciSI GCTCTTC 1 cut(s) 864
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 6 cut(s) 155, 343, 389, 598, 733, 834
PkrI GCNGC 6 cut(s) 172, 246, 304, 577, 799, 1367
PleI GAGTC 2 cut(s) 529, 1009
PpsI GAGTC 2 cut(s) 529, 1009
Ppu21I YACGTR 1 cut(s) 560
PpuMI RGGWCCY 1 cut(s) 1080
PshBI ATTAAT 1 cut(s) 888
PsiI TTATAA 1 cut(s) 864
Psp124BI GAGCTC 1 cut(s) 1494
Psp5II RGGWCCY 1 cut(s) 1080
PspFI CCCAGC 2 cut(s) 651, 1036
PspN4I GGNNCC 5 cut(s) 68, 955, 1082, 1209, 1286
PspPI GGNCC 3 cut(s) 512, 1080, 1285
PspPPI RGGWCCY 1 cut(s) 1080
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 1207
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 3 cut(s) 971, 980, 993
RsaNI GTAC 3 cut(s) 970, 979, 992
RseI CAYNNNNRTG 2 cut(s) 357, 1271
SacI GAGCTC 1 cut(s) 1494
SapI GCTCTTC 1 cut(s) 864
SaqAI TTAA 5 cut(s) 785, 888, 921, 1166, 1214
SatI GCNGC 6 cut(s) 171, 245, 303, 576, 798, 1366
Sau3AI GATC 4 cut(s) 675, 1096, 1177, 1207
Sau96I GGNCC 3 cut(s) 512, 1080, 1285
SchI GAGTC 2 cut(s) 529, 1010
SduI GDGCHC 1 cut(s) 1494
SfaNI GCATC 3 cut(s) 14, 999, 1157
SinI GGWCC 3 cut(s) 512, 1080, 1285
SmiMI CAYNNNNRTG 2 cut(s) 357, 1271
SmlI CTYRAG 2 cut(s) 164, 1520
SmoI CTYRAG 2 cut(s) 164, 1520
Sse9I AATT 4 cut(s) 41, 306, 782, 1470
SsiI CCGC 5 cut(s) 149, 798, 874, 1288, 1365
SspMI CTAG 3 cut(s) 30, 410, 1013
SstI GAGCTC 1 cut(s) 1494
StyI CCWWGG 1 cut(s) 1225
TaaI ACNGT 7 cut(s) 88, 240, 496, 631, 1171, 1195, 1362
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 780
TasI AATT 4 cut(s) 41, 306, 782, 1470
TatI WGTACW 2 cut(s) 969, 991
TauI GCSGC 2 cut(s) 800, 1368
TfiI GAWTC 6 cut(s) 155, 343, 389, 598, 733, 834
Tru1I TTAA 5 cut(s) 785, 888, 921, 1166, 1214
Tru9I TTAA 5 cut(s) 785, 888, 921, 1166, 1214
TscAI CASTG 4 cut(s) 91, 824, 1267, 1367
TseFI GTSAC 1 cut(s) 774
TseI GCWGC 4 cut(s) 170, 244, 302, 575
Tsp45I GTSAC 1 cut(s) 774
TspDTI ATGAA 5 cut(s) 147, 339, 702, 1018, 1491
TspGWI ACGGA 2 cut(s) 758, 1251
TspRI CASTG 4 cut(s) 91, 824, 1267, 1367
VpaK11BI GGWCC 3 cut(s) 512, 1080, 1285
VspI ATTAAT 1 cut(s) 888
XceI RCATGY 2 cut(s) 149, 356
XspI CTAG 3 cut(s) 30, 410, 1013
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.