Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Reverse (-)

43613195 .. 43618132

Gene Structure 4938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG356000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGAAAATCGGAGAGCGCAAATCGACTCTCTGAGAGCGATGTTAGTACTTTAGTTTCTCAGATAAGAGACTTGGATAGGAAGAATGCAGAACTGGAAGAACAAAACAAAAATTTGGCTTCCATGGTAGGAGTCTTGAAATTGGATGATATTTTGACTGATGTGAACTGGAGAAGGCATGGAACCTTTGGAAATGAAGTTGCTACCGTGCTTGGCGGTGGTACTGTACCAGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGAGTAGTGAGCAAATTGGGAGCAAAGCTGATCGTATGGAGATTAAAACAGAGGATCTTTTCTTGTACTCAAGTACTGATATTGAGGGAACATGTAAAGCCATGAAAGATGACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_25 ChlI

Protein Analysis

154

Amino Acids

16.7

Weight (kDa)

4.9

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	216, 237
AclWI	GGATC	2 cut(s)	236, 408
AcsI	RAATTY	1 cut(s)	112
AfaI	GTAC	6 cut(s)	49, 223, 228, 262, 413, 421
AfiI	CCNNNNNNNGG	2 cut(s)	236, 251
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	139
AluBI	AGCT	3 cut(s)	293, 307, 374
AluI	AGCT	3 cut(s)	293, 307, 374
Alw26I	GTCTC	2 cut(s)	63, 340
AlwI	GGATC	2 cut(s)	236, 408
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	251, 353
BbvI	GCAGC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	63, 340
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmcAI	AGTACT	2 cut(s)	49, 421
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 251
Bse1I	ACTGG	3 cut(s)	99, 173, 230
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	151, 317
BseLI	CCNNNNNNNGG	2 cut(s)	236, 251
BseMII	CTCAG	2 cut(s)	24, 74
BseNI	ACTGG	3 cut(s)	99, 173, 230
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	307
BsgI	GTGCAG	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	339
BslI	CCNNNNNNNGG	2 cut(s)	236, 251
BsmAI	GTCTC	2 cut(s)	63, 340
BsmI	GAATGC	1 cut(s)	91
Bsp143I	GATC	3 cut(s)	241, 376, 400
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	2 cut(s)	216, 237
BspCNI	CTCAG	2 cut(s)	25, 73
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	236, 408
BsrI	ACTGG	3 cut(s)	99, 173, 230
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	3 cut(s)	241, 376, 400
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	208, 226
Bst6I	CTCTTC	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	33, 60
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	151, 317
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	3 cut(s)	244, 379, 403
BstMAI	GTCTC	2 cut(s)	63, 340
BstMBI	GATC	3 cut(s)	241, 376, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	151, 317
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	20
Csp6I	GTAC	6 cut(s)	48, 222, 227, 261, 412, 420
CviAII	CATG	5 cut(s)	124, 179, 302, 438, 448
CviJI	RGCY	5 cut(s)	119, 293, 307, 374, 446
CviKI_1	RGCY	5 cut(s)	119, 293, 307, 374, 446
CviQI	GTAC	6 cut(s)	48, 222, 227, 261, 412, 420
DdeI	CTNAG	2 cut(s)	33, 60
DpnI	GATC	3 cut(s)	243, 378, 402
DpnII	GATC	3 cut(s)	241, 376, 400
DraI	TTTAAA	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	127, 182, 305, 441, 451
FaiI	YATR	7 cut(s)	125, 180, 290, 303, 383, 439, 449
FatI	CATG	5 cut(s)	123, 178, 301, 437, 447
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	158, 304
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	311
GsuI	CTGGAG	1 cut(s)	190
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	127, 182, 305, 441, 451
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	27, 132
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	2 cut(s)	251, 353
Hpy166II	GTNNAC	2 cut(s)	166, 263
Hpy188I	TCNGA	3 cut(s)	13, 34, 63
Hpy188III	TCNNGA	2 cut(s)	136, 274
Hpy8I	GTNNAC	2 cut(s)	166, 263
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	2 cut(s)	208, 226
HpyCH4V	TGCA	2 cut(s)	89, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	2 cut(s)	33, 60
Hsp92II	CATG	5 cut(s)	127, 182, 305, 441, 451
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	3 cut(s)	241, 376, 400
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	7 cut(s)	80, 154, 237, 243, 287, 293, 352
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	246
MalI	GATC	3 cut(s)	243, 378, 402
MboI	GATC	3 cut(s)	241, 376, 400
MboII	GAAGA	3 cut(s)	94, 110, 356
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	3 cut(s)	112, 140, 360
MlyI	GAGTC	2 cut(s)	21, 141
MnlI	CCTC	2 cut(s)	391, 424
MseI	TTAA	2 cut(s)	329, 390
MspI	CCGG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	241, 376, 400
NlaIII	CATG	5 cut(s)	127, 182, 305, 441, 451
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	441
PciI	ACATGT	1 cut(s)	437
PctI	GAATGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	2 cut(s)	21, 140
PpsI	GAGTC	2 cut(s)	21, 140
PscI	ACATGT	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	6 cut(s)	49, 223, 228, 262, 413, 421
RsaNI	GTAC	6 cut(s)	48, 222, 227, 261, 412, 420
SaqAI	TTAA	2 cut(s)	329, 390
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	241, 376, 400
ScaI	AGTACT	2 cut(s)	49, 421
SchI	GAGTC	2 cut(s)	21, 141
SetI	ASST	4 cut(s)	188, 295, 309, 376
SfaNI	GCATC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	3 cut(s)	112, 140, 360
SsiI	CCGC	2 cut(s)	216, 237
SspMI	CTAG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	208, 226
TaqI	TCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	112, 140, 360
TatI	WGTACW	4 cut(s)	47, 260, 411, 419
Tru1I	TTAA	2 cut(s)	329, 390
Tru9I	TTAA	2 cut(s)	329, 390
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	2 cut(s)	210, 464
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	441
XspI	CTAG	1 cut(s)	246
ZrmI	AGTACT	2 cut(s)	49, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.