RLG00000027316

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001026
Physical Location & Seq
Reverse (-)
10520109 .. 10525908
5800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027316

Sequence Viewer

Length: 831 bp
ATGGATTTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGATGGGTCTTCTCTTCTCTTCGATTTGGTATTTAGGAAATTGGATGATATTTTGACTGATGTGAACTGGAGAAGGCATGGAACCTTTGGAAATGAAGTTGCTACGGTGCTTGGCGGTGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGCCTCCGGTGAAGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGCCTCATTTGAGCGAGCAAAAAAATGGGTGCTAGAACTGAAATCACAAGGTGGTGGACTTATTAGTTTCTTATGGGGTGGGAGAGTTTCAGCGACTGCAGCATCAAACGACGACAATTTTCTTTCTCAGGCCTTTGGCTGGGTCAAGACAGGGGTGGAAGATCCTGGTTATGGATCTGATGGGTGTGAGTGGCTGGGATGGTTTCAATCCGAGGTGGAAGGGGATAGAAAGGTGGAGAGTCAAAGGTTGGTCGTGGTTAGCAGATCCAGGCCTATGGTGGCAGTGCAGATTGCTCCCTCTTTCATGGTTTTCGGTGTTCTTCTTTGTCAATGGTCCAGTTTTGGTCCTAGATCTGGTCGGAGACTATGTAGAGAGTGGAGGTGGAAGGCCACACGGCGGGCTTGGGTGGCTACAATGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

277

Amino Acids

30.29

Weight (kDa)

6.0

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 180, 189, 805
AclWI GGATC 4 cut(s) 188, 563, 589, 666
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 5 cut(s) 203, 546, 578, 761, 804
AgsI TTSAA 3 cut(s) 28, 359, 614
AjnI CCWGG 3 cut(s) 391, 571, 674
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 245, 259, 338
AluI AGCT 3 cut(s) 245, 259, 338
Alw26I GTCTC 2 cut(s) 327, 763
AlwI GGATC 4 cut(s) 188, 563, 589, 666
AlwNI CAGNNNCTG 1 cut(s) 503
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 4 cut(s) 408, 537, 677, 795
ApeKI GCWGC 2 cut(s) 233, 506
AspS9I GGNCC 2 cut(s) 741, 752
AsuHPI GGTGA 2 cut(s) 203, 305
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 2 cut(s) 741, 752
BbsI GAAGAC 1 cut(s) 66
BbvI GCAGC 2 cut(s) 220, 518
BccI CCATC 3 cut(s) 62, 581, 600
BceAI ACGGC 1 cut(s) 818
BciT130I CCWGG 3 cut(s) 393, 573, 676
BcoDI GTCTC 2 cut(s) 327, 763
BfaI CTAG 3 cut(s) 198, 440, 756
BfmI CTRYAG 1 cut(s) 504
BglII AGATCT 1 cut(s) 758
BisI GCNGC 2 cut(s) 234, 507
BlsI GCNGC 2 cut(s) 235, 508
Bme1390I CCNGG 3 cut(s) 393, 573, 676
Bme18I GGWCC 2 cut(s) 741, 752
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 741, 752
BmiI GGNNCC 2 cut(s) 148, 330
BmrFI CCNGG 3 cut(s) 393, 573, 676
BmsI GCATC 2 cut(s) 278, 518
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 2 cut(s) 154, 414
BpuEI CTTGAG 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 4 cut(s) 387, 417, 760, 790
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 546, 578, 761, 804
Bse1I ACTGG 2 cut(s) 137, 744
BseBI CCWGG 3 cut(s) 393, 573, 676
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 3 cut(s) 115, 269, 611
BseLI CCNNNNNNNGG 5 cut(s) 203, 546, 578, 761, 804
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 2 cut(s) 137, 744
BseRI GAGGAG 2 cut(s) 35, 321
BseXI GCAGC 2 cut(s) 220, 518
BseYI CCCAGC 3 cut(s) 259, 546, 601
BsgI GTGCAG 2 cut(s) 219, 713
BshFI GGCC 4 cut(s) 410, 539, 679, 797
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 5 cut(s) 203, 546, 578, 761, 804
BsmAI GTCTC 2 cut(s) 327, 763
BsnI GGCC 4 cut(s) 410, 539, 679, 797
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 5 cut(s) 193, 568, 581, 671, 758
BspACI CCGC 3 cut(s) 180, 189, 805
BspANI GGCC 4 cut(s) 410, 539, 679, 797
BspCNI CTCAG 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 148, 330
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 4 cut(s) 188, 563, 589, 666
BspTNI GGTCTC 1 cut(s) 327
BsrI ACTGG 2 cut(s) 137, 744
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 5 cut(s) 193, 568, 581, 671, 758
Bst2UI CCWGG 3 cut(s) 393, 573, 676
Bst4CI ACNGT 2 cut(s) 172, 364
Bst6I CTCTTC 3 cut(s) 84, 89, 291
BstC8I GCNNGC 3 cut(s) 205, 423, 807
BstDEI CTNAG 2 cut(s) 59, 534
BstF5I GGATG 3 cut(s) 115, 269, 611
BstKTI GATC 5 cut(s) 196, 571, 584, 674, 761
BstMAI GTCTC 2 cut(s) 327, 763
BstMBI GATC 5 cut(s) 193, 568, 581, 671, 758
BstMWI GCNNNNNNNGC 6 cut(s) 186, 242, 335, 344, 506, 815
BstNI CCWGG 3 cut(s) 393, 573, 676
BstSCI CCNGG 3 cut(s) 391, 571, 674
BstSFI CTRYAG 1 cut(s) 504
BstV1I GCAGC 2 cut(s) 220, 518
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 4 cut(s) 568, 581, 671, 758
BstXI CCANNNNNNTGG 1 cut(s) 682
BstYI RGATCY 4 cut(s) 568, 581, 671, 758
BsuRI GGCC 4 cut(s) 410, 539, 679, 797
BtsCI GGATG 3 cut(s) 115, 269, 611
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 205, 423, 807
CaiI CAGNNNCTG 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 741, 752
Csp6I GTAC 1 cut(s) 213
CviAII CATG 3 cut(s) 143, 254, 712
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 59, 534
DpnI GATC 5 cut(s) 195, 570, 583, 673, 760
DpnII GATC 5 cut(s) 193, 568, 581, 671, 758
DraI TTTAAA 2 cut(s) 282, 372
DraIII CACNNNGTG 1 cut(s) 458
Eam1104I CTCTTC 3 cut(s) 84, 89, 291
EarI CTCTTC 3 cut(s) 84, 89, 291
Eco147I AGGCCT 3 cut(s) 410, 539, 679
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 741, 752
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 391, 571, 674
FaeI CATG 3 cut(s) 146, 257, 715
FaiI YATR 9 cut(s) 144, 242, 255, 305, 481, 579, 683, 713, 775
FatI CATG 3 cut(s) 142, 253, 711
FauI CCCGC 1 cut(s) 798
Fnu4HI GCNGC 2 cut(s) 234, 507
FokI GGATG 3 cut(s) 122, 256, 618
Fsp4HI GCNGC 2 cut(s) 234, 507
FspBI CTAG 3 cut(s) 198, 440, 756
GluI GCNGC 2 cut(s) 234, 507
GsaI CCCAGC 3 cut(s) 263, 550, 605
GsuI CTGGAG 2 cut(s) 154, 414
HaeIII GGCC 4 cut(s) 410, 539, 679, 797
HapII CCGG 1 cut(s) 291
Hin1II CATG 3 cut(s) 146, 257, 715
HinfI GANTC 2 cut(s) 350, 646
HpaII CCGG 1 cut(s) 291
HphI GGTGA 2 cut(s) 203, 305
Hpy166II GTNNAC 3 cut(s) 130, 215, 464
Hpy188I TCNGA 3 cut(s) 586, 619, 768
Hpy188III TCNNGA 4 cut(s) 20, 28, 226, 553
Hpy8I GTNNAC 3 cut(s) 130, 215, 464
Hpy99I CGWCG 2 cut(s) 38, 521
HpyAV CCTTC 4 cut(s) 26, 132, 620, 787
HpyCH4III ACNGT 2 cut(s) 172, 364
HpyCH4V TGCA 3 cut(s) 236, 506, 694
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 242, 335, 344, 506, 815
HpyF3I CTNAG 2 cut(s) 59, 534
Hsp92II CATG 3 cut(s) 146, 257, 715
Kzo9I GATC 5 cut(s) 193, 568, 581, 671, 758
LmnI GCTCC 2 cut(s) 334, 706
Lsp1109I GCAGC 2 cut(s) 220, 518
LweI GCATC 2 cut(s) 278, 518
MaeI CTAG 3 cut(s) 198, 440, 756
MalI GATC 5 cut(s) 195, 570, 583, 673, 760
MboI GATC 5 cut(s) 193, 568, 581, 671, 758
MboII GAAGA 6 cut(s) 66, 71, 76, 308, 578, 719
MflI RGATCY 4 cut(s) 568, 581, 671, 758
MluCI AATT 3 cut(s) 104, 342, 523
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 1 cut(s) 746
MseI TTAA 2 cut(s) 281, 371
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 3 cut(s) 393, 573, 676
MvaI CCWGG 3 cut(s) 393, 573, 676
MwoI GCNNNNNNNGC 6 cut(s) 186, 242, 335, 344, 506, 815
NdeII GATC 5 cut(s) 193, 568, 581, 671, 758
NlaIII CATG 3 cut(s) 146, 257, 715
NlaIV GGNNCC 2 cut(s) 148, 330
PaeR7I CTCGAG 1 cut(s) 20
PceI AGGCCT 3 cut(s) 410, 539, 679
PfeI GAWTC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 2 cut(s) 235, 508
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 391, 571, 674
PspFI CCCAGC 3 cut(s) 259, 546, 601
PspGI CCWGG 3 cut(s) 391, 571, 674
PspN4I GGNNCC 2 cut(s) 148, 330
PspPI GGNCC 2 cut(s) 741, 752
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 4 cut(s) 568, 581, 671, 758
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 281, 371
SatI GCNGC 2 cut(s) 234, 507
Sau3AI GATC 5 cut(s) 193, 568, 581, 671, 758
Sau96I GGNCC 2 cut(s) 741, 752
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 3 cut(s) 393, 573, 676
SfaNI GCATC 2 cut(s) 278, 518
SfcI CTRYAG 1 cut(s) 504
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 2 cut(s) 741, 752
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 20, 333
SmoI CTYRAG 2 cut(s) 20, 333
Sse9I AATT 3 cut(s) 104, 342, 523
SseBI AGGCCT 3 cut(s) 410, 539, 679
SsiI CCGC 3 cut(s) 180, 189, 805
SspMI CTAG 3 cut(s) 198, 440, 756
StuI AGGCCT 3 cut(s) 410, 539, 679
StyD4I CCNGG 3 cut(s) 391, 571, 674
TaaI ACNGT 2 cut(s) 172, 364
TaqI TCGA 3 cut(s) 9, 21, 87
TasI AATT 3 cut(s) 104, 342, 523
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 281, 371
Tru9I TTAA 2 cut(s) 281, 371
TscAI CASTG 1 cut(s) 696
TseI GCWGC 2 cut(s) 233, 506
TspDTI ATGAA 3 cut(s) 174, 356, 700
TspRI CASTG 1 cut(s) 696
VpaK11BI GGWCC 2 cut(s) 741, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 3 cut(s) 198, 440, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.