Rh2AG418000

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001026
Physical Location & Seq
Reverse (-)
62088341 .. 62093291
4951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG418000.1

Sequence Viewer

Length: 639 bp
ATGCAAGTACCAGACATGAAAGGCCTCGGAGCGATTTGCACCCTGAAACGCCTTCTCAAACCCACCACCCTCCCAAACCCATCTCTCATTTCCTTCCAATCCCTCCAAAACCCCACCTTCTCCCGCCATTTCCCCTCCACCGACCATCTCCGCCACCACGAAGAACCCAACTCCGGCGAAAACAAAATGGGTCCGTCGAGTTTGGTCAATGTGGTCAGTGAGATCGAGAAGGGTACGGCTGACAGGAGCGTTGGCCAGGAAGGTGAGATCAGGAACCGGGTCGGTCTAGCAGTTGTACCTGTTGTTAATGGAATTCAAGCTAATGGAGCTTCCATCATTATTGCAGTACTTGCAAAGCAAGCTGGTCTAAAGCTCAAAGACAATGCCATGCTCTTAAATGTTGTTAGCAGGGTGATGCTGAAAGAAACTGCCAGTGACCTTGCAATAGCCGCAGCAATTTGCAGCAGGCATGTTTCTGCAATGGATAAAAAAATAGATACAGTGGCAAAACTGGGTTACAAGACGTGCATTGTACCAAAGTCAGCTGAAAAATCTGTAAGAGGAACTCTAGGTTTCGAGGATATCAAAATTATATATAGGCTGCAAGAATCTGAAAGAGGTCATCAATATCGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

212

Amino Acids

23.03

Weight (kDa)

9.51

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 124, 151, 450
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 312
AfaI GTAC 5 cut(s) 9, 235, 297, 348, 534
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 317
AjiI CACGTC 1 cut(s) 525
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 5 cut(s) 320, 329, 362, 373, 545
AluI AGCT 5 cut(s) 320, 329, 362, 373, 545
AoxI GGCC 2 cut(s) 22, 253
ApeKI GCWGC 3 cut(s) 452, 462, 601
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 275, 424
AvaII GGWCC 1 cut(s) 191
BalI TGGCCA 1 cut(s) 255
BbvI GCAGC 3 cut(s) 464, 474, 588
BccI CCATC 3 cut(s) 88, 153, 341
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 278
BfaI CTAG 2 cut(s) 287, 569
BisI GCNGC 4 cut(s) 450, 453, 463, 602
BlsI GCNGC 4 cut(s) 451, 454, 464, 603
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 257, 278
Bme18I GGWCC 1 cut(s) 191
BmgBI CACGTC 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 192, 275
BmrFI CCNGG 2 cut(s) 257, 278
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 432, 516
Bse3DI GCAATG 1 cut(s) 486
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 432, 516
BseXI GCAGC 3 cut(s) 464, 474, 588
BshFI GGCC 2 cut(s) 24, 255
BsiSI CCGG 2 cut(s) 174, 277
BslI CCNNNNNNNGG 1 cut(s) 173
BsnI GGCC 2 cut(s) 24, 255
Bsp143I GATC 2 cut(s) 222, 267
BspACI CCGC 3 cut(s) 124, 151, 450
BspANI GGCC 2 cut(s) 24, 255
BspLI GGNNCC 2 cut(s) 192, 275
BsrDI GCAATG 1 cut(s) 486
BsrI ACTGG 2 cut(s) 432, 516
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 222, 267
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 502
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 360, 467
BstKTI GATC 2 cut(s) 225, 270
BstMBI GATC 2 cut(s) 222, 267
BstMWI GCNNNNNNNGC 4 cut(s) 326, 350, 359, 449
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 255, 276
BstV1I GCAGC 3 cut(s) 464, 474, 588
BsuRI GGCC 2 cut(s) 24, 255
BtrI CACGTC 1 cut(s) 525
BtsIMutI CAGTG 3 cut(s) 223, 439, 507
Cac8I GCNNGC 2 cut(s) 360, 467
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 5 cut(s) 8, 234, 296, 347, 533
CviAII CATG 3 cut(s) 16, 388, 470
CviQI GTAC 5 cut(s) 8, 234, 296, 347, 533
DpnI GATC 2 cut(s) 224, 269
DpnII GATC 2 cut(s) 222, 267
EaeI YGGCCR 1 cut(s) 253
EciI GGCGGA 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 24
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 583
FaeI CATG 3 cut(s) 19, 391, 473
FaiI YATR 6 cut(s) 17, 389, 471, 593, 595, 597
FatI CATG 3 cut(s) 15, 387, 469
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 450, 453, 463, 602
Fsp4HI GCNGC 4 cut(s) 450, 453, 463, 602
FspBI CTAG 2 cut(s) 287, 569
GluI GCNGC 4 cut(s) 450, 453, 463, 602
HaeIII GGCC 2 cut(s) 24, 255
HapII CCGG 2 cut(s) 174, 277
Hin1II CATG 3 cut(s) 19, 391, 473
HinfI GANTC 1 cut(s) 608
HpaII CCGG 2 cut(s) 174, 277
HphI GGTGA 2 cut(s) 275, 424
Hpy188I TCNGA 2 cut(s) 29, 613
Hpy188III TCNNGA 2 cut(s) 226, 271
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 5 cut(s) 62, 103, 127, 223, 254
HpyCH4III ACNGT 1 cut(s) 502
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 9 cut(s) 4, 39, 344, 353, 443, 462, 479, 528, 604
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 350, 359, 449
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 3 cut(s) 19, 391, 473
Kzo9I GATC 2 cut(s) 222, 267
LmnI GCTCC 3 cut(s) 29, 246, 326
Lsp1109I GCAGC 3 cut(s) 464, 474, 588
LweI GCATC 1 cut(s) 405
MaeI CTAG 2 cut(s) 287, 569
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 434, 515
MalI GATC 2 cut(s) 224, 269
MboI GATC 2 cut(s) 222, 267
MboII GAAGA 1 cut(s) 173
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 3 cut(s) 312, 456, 588
MluNI TGGCCA 1 cut(s) 255
MnlI CCTC 7 cut(s) 35, 80, 113, 145, 554, 571, 611
Mox20I TGGCCA 1 cut(s) 255
MscI TGGCCA 1 cut(s) 255
MseI TTAA 2 cut(s) 306, 395
Msp20I TGGCCA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 2 cut(s) 174, 277
MspR9I CCNGG 2 cut(s) 257, 278
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 4 cut(s) 326, 350, 359, 449
NciI CCSGG 1 cut(s) 278
NdeII GATC 2 cut(s) 222, 267
NlaIII CATG 3 cut(s) 19, 391, 473
NlaIV GGNNCC 2 cut(s) 192, 275
NmuCI GTSAC 1 cut(s) 434
NspI RCATGY 1 cut(s) 473
PceI AGGCCT 1 cut(s) 24
PfeI GAWTC 1 cut(s) 608
PkrI GCNGC 4 cut(s) 451, 454, 464, 603
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 192, 275
PspPI GGNCC 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 5 cut(s) 9, 235, 297, 348, 534
RsaNI GTAC 5 cut(s) 8, 234, 296, 347, 533
SaqAI TTAA 2 cut(s) 306, 395
SatI GCNGC 4 cut(s) 450, 453, 463, 602
Sau3AI GATC 2 cut(s) 222, 267
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 257, 278
SfaNI GCATC 1 cut(s) 405
SinI GGWCC 1 cut(s) 191
Sse9I AATT 3 cut(s) 312, 456, 588
SseBI AGGCCT 1 cut(s) 24
SsiI CCGC 3 cut(s) 124, 151, 450
SspMI CTAG 2 cut(s) 287, 569
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 2 cut(s) 255, 276
TaaI ACNGT 1 cut(s) 502
TaiI ACGT 1 cut(s) 527
TaqI TCGA 3 cut(s) 197, 225, 576
TaqII GACCGA 1 cut(s) 272
TasI AATT 3 cut(s) 312, 456, 588
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 306, 395
Tru9I TTAA 2 cut(s) 306, 395
TscAI CASTG 3 cut(s) 223, 439, 507
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 452, 462, 601
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 3 cut(s) 223, 439, 507
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 1 cut(s) 312
XceI RCATGY 1 cut(s) 473
XspI CTAG 2 cut(s) 287, 569
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.