RLG00000032728

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001026
Physical Location & Seq
Forward (+)
18352782 .. 18355710
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032728

Sequence Viewer

Length: 339 bp
ATGGACTTCGATAACCTTCTCGAGTTCAAGAACGACGACCCACTCCTCAACCCTCTGCTAAGAAAAGTTGGCGGTGATCCTAGTGCTGGCAAGAGTACACTTGTATTCCAGATTGCTGCACTTATAGCTGAAAGACATGAGCTGGGTAAAGCATCCCGTGTTTTAAATGTCTCCGGTGAAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAATAGTTCATTTAAAAGGAGTGGCTGGAAATCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTCCGAAGAGGTCTAGTTCTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

113

Amino Acids

12.05

Weight (kDa)

6.09

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 71
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 28, 230
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 262
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 3 cut(s) 128, 142, 209
AluI AGCT 3 cut(s) 128, 142, 209
Alw26I GTCTC 2 cut(s) 175, 198
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 116, 304
AsuHPI GGTGA 3 cut(s) 86, 188, 292
AvaI CYCGRG 1 cut(s) 20
BbvI GCAGC 2 cut(s) 103, 291
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 175, 198
BfaI CTAG 2 cut(s) 81, 324
BisI GCNGC 2 cut(s) 117, 305
BlsI GCNGC 2 cut(s) 118, 306
Bme1390I CCNGG 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 35, 192
BseXI GCAGC 2 cut(s) 103, 291
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 2 cut(s) 175, 198
BsmI GAATGC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 198
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 2 cut(s) 174, 311
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 175, 198
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 125, 206, 215
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 2 cut(s) 103, 291
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 137
CviJI RGCY 6 cut(s) 128, 142, 200, 209, 254, 299
CviKI_1 RGCY 6 cut(s) 128, 142, 200, 209, 254, 299
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 1 cut(s) 59
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraI TTTAAA 2 cut(s) 165, 243
Eam1104I CTCTTC 2 cut(s) 174, 311
EarI CTCTTC 2 cut(s) 174, 311
Eco31I GGTCTC 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 140
FaiI YATR 2 cut(s) 125, 138
FatI CATG 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 117, 305
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 2 cut(s) 117, 305
FspBI CTAG 2 cut(s) 81, 324
GluI GCNGC 2 cut(s) 117, 305
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 174
Hin1II CATG 1 cut(s) 140
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 86, 188, 292
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 315, 331
Hpy188III TCNNGA 3 cut(s) 20, 28, 109
Hpy8I GTNNAC 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 26, 277
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 119, 291
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 206, 215
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 9 cut(s) 72, 122, 128, 182, 187, 240, 249, 263, 276
Lsp1109I GCAGC 2 cut(s) 103, 291
LweI GCATC 1 cut(s) 161
MaeI CTAG 2 cut(s) 81, 324
MaeII ACGT 1 cut(s) 293
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 2 cut(s) 191, 328
MluCI AATT 1 cut(s) 213
MnlI CCTC 6 cut(s) 56, 63, 175, 213, 260, 312
MseI TTAA 2 cut(s) 164, 242
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 293
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 125, 206, 215
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 20
PctI GAATGC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 2 cut(s) 118, 306
Psp6I CCWGG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 201
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 2 cut(s) 164, 242
SatI GCNGC 2 cut(s) 117, 305
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 264
SetI ASST 7 cut(s) 18, 130, 144, 211, 282, 296, 323
SfaNI GCATC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 20, 204
SmoI CTYRAG 2 cut(s) 20, 204
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 81, 324
StyD4I CCNGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 9, 21
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 164, 242
Tru9I TTAA 2 cut(s) 164, 242
TseI GCWGC 2 cut(s) 116, 304
TspDTI ATGAA 1 cut(s) 227
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 2 cut(s) 81, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.