Rh3DG359300

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001026
Physical Location & Seq
Reverse (-)
44048055 .. 44051799
3745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG359300.1

Sequence Viewer

Length: 363 bp
ATGTATGATTCCATCGAGAGTGATGAATGGAAACAGTTTGTTGCTTCACGATTATCAAATGATTGGCTGATGGAGGCCATGTCTGAAGAAGAAGAACTTGATCGTTCTTATTTATGGAAGAAAGCACGGGAAGAGGATGATCGTATGGAGATTAAAACAGATGATCTTTTCTTGTACTCAAGTACTGATATTGAGGATATATTAGAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTGATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCCTGGAGGCATTGTTCAGGTGAAGGAATGCACGTCAGCCTTGCTGCGTTTTGCGAAGAGGTCTAGTTCTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_25 ChlI

Protein Analysis

120

Amino Acids

13.76

Weight (kDa)

4.43

Isoelectric Point (pI)

83.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 2 cut(s) 176, 184
AgsI TTSAA 1 cut(s) 254
AjiI CACGTC 1 cut(s) 318
AjnI CCWGG 1 cut(s) 286
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 316
BbvI GCAGC 1 cut(s) 315
BccI CCATC 2 cut(s) 20, 64
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 329
BlsI GCNGC 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 288
BmgBI CACGTC 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 163, 213
BsaI GGTCTC 1 cut(s) 222
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 282, 312
BseBI CCWGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 315
BshFI GGCC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 317
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 222
Bsp143I GATC 3 cut(s) 100, 139, 163
BspANI GGCC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 222
BssMI GATC 3 cut(s) 100, 139, 163
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 36, 259
Bst6I CTCTTC 2 cut(s) 126, 335
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 103, 142, 166
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 3 cut(s) 100, 139, 163
BstMWI GCNNNNNNNGC 2 cut(s) 230, 239
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 77
BtrI CACGTC 1 cut(s) 318
BtsCI GGATG 1 cut(s) 142
Csp6I GTAC 2 cut(s) 175, 183
CviAII CATG 1 cut(s) 79
CviJI RGCY 6 cut(s) 67, 77, 224, 233, 278, 323
CviKI_1 RGCY 6 cut(s) 67, 77, 224, 233, 278, 323
CviQI GTAC 2 cut(s) 175, 183
DpnI GATC 3 cut(s) 102, 141, 165
DpnII GATC 3 cut(s) 100, 139, 163
DraI TTTAAA 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 126, 335
EarI CTCTTC 2 cut(s) 126, 335
Eco31I GGTCTC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 6, 80, 115, 146, 200
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 1 cut(s) 348
GluI GCNGC 1 cut(s) 329
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 82
HinfI GANTC 2 cut(s) 8, 245
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 85, 355
Hpy188III TCNNGA 2 cut(s) 16, 48
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 2 cut(s) 36, 259
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 239
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 3 cut(s) 100, 139, 163
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 206, 264, 273, 287, 300
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 317
MalI GATC 3 cut(s) 102, 141, 165
MboI GATC 3 cut(s) 100, 139, 163
MboII GAAGA 6 cut(s) 98, 101, 104, 130, 143, 352
MluCI AATT 1 cut(s) 237
MnlI CCTC 7 cut(s) 67, 127, 187, 199, 237, 284, 336
MseI TTAA 2 cut(s) 153, 266
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 317
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 230, 239
NdeII GATC 3 cut(s) 100, 139, 163
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 225
PctI GAATGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 8, 245
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 225
RsaI GTAC 2 cut(s) 176, 184
RsaNI GTAC 2 cut(s) 175, 183
SaqAI TTAA 2 cut(s) 153, 266
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 3 cut(s) 100, 139, 163
ScaI AGTACT 1 cut(s) 184
ScrFI CCNGG 1 cut(s) 288
SetI ASST 4 cut(s) 235, 306, 320, 347
SmlI CTYRAG 2 cut(s) 178, 228
SmoI CTYRAG 2 cut(s) 178, 228
Sse9I AATT 1 cut(s) 237
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 36, 259
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 237
TatI WGTACW 2 cut(s) 174, 182
TfiI GAWTC 2 cut(s) 8, 245
Tru1I TTAA 2 cut(s) 153, 266
Tru9I TTAA 2 cut(s) 153, 266
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 39, 251
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.