Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001026

Physical Location & Seq

Genomic Coordinates Forward (+)

1864777 .. 1869313

Gene Structure 4537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00219730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTCTCATGGGGACTATACATCACACCAGAAAACTATTGATCTTGTCAAAGAATACAACTCTCAATTCAAAGACAAGGAAAGTTGGTCTCTGGCTCCTCAAGCTCTAATTGCTTATTCCATTCAAACAGTTCATTTAAAAGGAGTGGCTGGAAGTCTTGGAGGCATTGTTCAGGTTGGAGTTTTAACTTGTAACATACCAAGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

69

Amino Acids

7.47

Weight (kDa)

6.81

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50340 AT5G50340 AT5G50340
fragaria_vesca	FvH4_6g32620 FvH4_6g32620 FvH4_6g32620 FvH4_6g32620
malus_domestica	MD17G1180500.v1.1
prunus_persica	Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1 Prupe.3G056500_v2.0.a1
pyrus_communis	pycom17g18990
rosa_chinensis	RchiOBHm_Chr2g0141071 RchiOBHm_Chr2g0141091 RchiOBHm_Chr2g0141101 RchiOBHm_Chr5g0012681
rosa_laevigata	RLG00000001036 RLG00000002993 RLG00000009042 RLG00000013096 RLG00000014400 RLG00000019913 RLG00000019914 RLG00000027316 RLG00000032728
rosa_multiflora	Rmu_co8164566.1_g000001 Rmu_sc0001921.1_g000007 Rmu_sc0006556.1_g000016
rosa_roxburghii	Rroxscaffold_2G00104210 Rroxscaffold_2G00137050 Rroxscaffold_3G00219730 Rroxscaffold_7G00190730
rosa_rugosa	Rorug02G0253200 Rorug02G0253300 Rorug02G0366900 Rorug02G0367000 Rorug02G0367100
rosa_samantha	Rh2AG418000 Rh2AG418100 Rh2BG194300 Rh2BG270500 Rh2BG428000 Rh2BG428100 Rh2CG404300 Rh2CG404400 Rh2DG437600 Rh2DG437700 Rh2DG437900 Rh3CG342200 Rh3CG356000 Rh3DG359300 Rh4DG164300 Rh4DG164900 Rh5CG330800 Rh5DG203000 Rh6BG232700
rosa_wichuraiana	Rw2G034220 Rw2G034230 Rw2G034280 Rw2G034290 Rw3G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	70, 125
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	9, 93
BcoDI	GTCTC	2 cut(s)	9, 93
BmiI	GGNNCC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
BseRI	GAGGAG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	9, 93
BsmFI	GGGAC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	93
BssMI	GATC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	130
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	9, 93
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 110
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	3 cut(s)	95, 104, 149
CviKI_1	RGCY	3 cut(s)	95, 104, 149
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
DraI	TTTAAA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	93
FaeI	CATG	1 cut(s)	11
FaiI	YATR	5 cut(s)	9, 18, 197, 206, 208
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	7
FauNDI	CATATG	1 cut(s)	206
Hin1II	CATG	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 110
Hsp92II	CATG	1 cut(s)	11
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	4 cut(s)	41, 77, 135, 158
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MluCI	AATT	2 cut(s)	65, 108
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	2 cut(s)	108, 155
MseI	TTAA	2 cut(s)	137, 185
MwoI	GCNNNNNNNGC	2 cut(s)	101, 110
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	11
NlaIV	GGNNCC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	137, 185
Sau3AI	GATC	1 cut(s)	40
SetI	ASST	2 cut(s)	106, 177
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	65, 108
TaaI	ACNGT	1 cut(s)	130
TasI	AATT	2 cut(s)	65, 108
Tru1I	TTAA	2 cut(s)	137, 185
Tru9I	TTAA	2 cut(s)	137, 185
TspDTI	ATGAA	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.