Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Reverse (-)

3375223 .. 3376431

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGGGTTCAACATCAGCATAAAACTTTAGCGCGAACTAACCAACTCAGATTTTTGGACAAAGCAATGCTCATTGACTACCTTGATGCATCAACCAACATCAGAAACCCTTGGAGGCTATGCTCTCTACATCAAGTGGAAGAAGTGAAGCTGGTTCTACGTCTTATTCCCATATGGTTCTGTTGCCTGATGTTCTTTGCAGTTAATTCGCAATCCCACACCTACTTCATTAAGCAAGGTTCTATGATGATACGATCAGTGGGTTCTCACTTTCAGCTTCCACCAGCATCACTTCAAGCCTTCGTGGGCATCATAATTTTAATCACTGTCCCTATCTATGATCGATTGCTCGTCCCAATAGCGCGAAAGTTCACTGGATGTCCAACAGGGATAACAGTCCTCCAAAGAATTGGCATTGGCCTATTCCTCCCCGTACTCAACATGACTGTGTCAGCTATAGTTGAGGCTAAAAGGGTTAGCATTGCAAGAAACTATGACCTCATGGATGATCCTAAAGCAATAGTGCCAATGAATATTTGGTGGTTACTACCACAATTTACAATTTGTGGTTTGTCTTCTACATTTGCAGTCGTGGGACTCCAAGATTTGTTCTATGATCAAATGCCAGATGCAAGGAGAAGTTTGGGAGCAGCAGCATATATTAGTATTGTAGGAGTTGGGAGCTTCGTTAGTACTTTTTTCATATCAGCCGTGCAGGCTATTACTTCAGAGTCTGGTGAAATATGGTTAGGGGACAATTTGAACGGCGCGCACCTTGATTATTTCTATTGGGTGCTCGCTGCATCAAGCGGTTTAAGTTTAGGTGTTTATGTGAGGATTGCAATGTGTTTTGTGTACAAGATACTTGAAAGGGTGGAAACAACTGAAGAACAGGAGCACAGGTCTATGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

305

Amino Acids

34.16

Weight (kDa)

8.2

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	7 - 244	4.9e-46	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 364, 770
AciI	CCGC	1 cut(s)	810
AclWI	GGATC	1 cut(s)	503
AcuI	CTGAAG	2 cut(s)	711, 906
AfaI	GTAC	3 cut(s)	435, 694, 857
AgsI	TTSAA	4 cut(s)	11, 296, 763, 869
AluBI	AGCT	4 cut(s)	151, 277, 455, 684
AluI	AGCT	4 cut(s)	151, 277, 455, 684
Alw21I	GWGCWC	2 cut(s)	798, 900
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	3 cut(s)	650, 653, 800
AspLEI	GCGC	4 cut(s)	34, 364, 770, 772
AsuHPI	GGTGA	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	567
Bbv12I	GWGCWC	2 cut(s)	798, 900
BbvI	GCAGC	3 cut(s)	662, 665, 787
BceAI	ACGGC	2 cut(s)	695, 781
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BclI	TGATCA	1 cut(s)	616
BfmI	CTRYAG	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	716
BisI	GCNGC	3 cut(s)	651, 654, 801
BlsI	GCNGC	3 cut(s)	652, 655, 802
BmcAI	AGTACT	1 cut(s)	694
BmsI	GCATC	6 cut(s)	76, 98, 296, 318, 619, 812
BpiI	GAAGAC	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	1 cut(s)	887
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	3 cut(s)	72, 480, 849
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	383, 511
BseMI	GCAATG	3 cut(s)	72, 480, 849
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	379
BsePI	GCGCGC	1 cut(s)	768
BseXI	GCAGC	3 cut(s)	662, 665, 787
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	3 cut(s)	34, 364, 770
BshFI	GGCC	1 cut(s)	420
BshVI	ATCGAT	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	798, 900
BslFI	GGGAC	4 cut(s)	314, 338, 609, 767
BsmFI	GGGAC	4 cut(s)	314, 338, 609, 767
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	798, 900
Bsp1407I	TGTACA	1 cut(s)	855
Bsp143I	GATC	4 cut(s)	254, 340, 508, 616
BspACI	CCGC	1 cut(s)	810
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	1 cut(s)	60
BspDI	ATCGAT	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	34, 364, 770
BspPI	GGATC	1 cut(s)	503
BsrDI	GCAATG	3 cut(s)	72, 480, 849
BsrGI	TGTACA	1 cut(s)	855
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	110
BssHII	GCGCGC	1 cut(s)	768
BssMI	GATC	4 cut(s)	254, 340, 508, 616
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	328, 397, 448
BstAUI	TGTACA	1 cut(s)	855
BstC8I	GCNNGC	3 cut(s)	717, 770, 798
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	383, 511
BstFNI	CGCG	3 cut(s)	34, 364, 770
BstHHI	GCGC	4 cut(s)	34, 364, 770, 772
BstKTI	GATC	4 cut(s)	257, 343, 511, 619
BstMBI	GATC	4 cut(s)	254, 340, 508, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	3 cut(s)	34, 364, 770
BstV1I	GCAGC	3 cut(s)	662, 665, 787
BstV2I	GAAGAC	1 cut(s)	567
BstXI	CCANNNNNNTGG	1 cut(s)	410
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	420
BsuTUI	ATCGAT	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	383, 511
BtsIMutI	CAGTG	3 cut(s)	264, 324, 372
Cac8I	GCNNGC	3 cut(s)	717, 770, 798
CaiI	CAGNNNCTG	1 cut(s)	734
CfoI	GCGC	4 cut(s)	34, 364, 770, 772
ClaI	ATCGAT	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	434, 693, 856
CviAII	CATG	2 cut(s)	442, 502
CviQI	GTAC	3 cut(s)	434, 693, 856
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	256, 342, 510, 618
DpnII	GATC	4 cut(s)	254, 340, 508, 616
Eco130I	CCWWGG	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	711, 906
EcoT14I	CCWWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	445, 505
FaqI	GGGAC	4 cut(s)	314, 338, 609, 767
FatI	CATG	2 cut(s)	441, 501
FauNDI	CATATG	1 cut(s)	173
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	651, 654, 801
FokI	GGATG	2 cut(s)	390, 518
Fsp4HI	GCNGC	3 cut(s)	651, 654, 801
GlaI	GCGC	4 cut(s)	33, 363, 769, 771
GluI	GCNGC	3 cut(s)	651, 654, 801
HaeIII	GGCC	1 cut(s)	420
HhaI	GCGC	4 cut(s)	34, 364, 770, 772
Hin1II	CATG	2 cut(s)	445, 505
Hin6I	GCGC	4 cut(s)	32, 362, 768, 770
HinP1I	GCGC	4 cut(s)	32, 362, 768, 770
HinfI	GANTC	2 cut(s)	597, 731
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	2 cut(s)	372, 856
Hpy188I	TCNGA	4 cut(s)	50, 104, 730, 914
Hpy8I	GTNNAC	2 cut(s)	372, 856
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	3 cut(s)	328, 397, 448
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	8 cut(s)	89, 200, 485, 587, 632, 715, 803, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	445, 505
HspAI	GCGC	4 cut(s)	32, 362, 768, 770
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	254, 340, 508, 616
LmnI	GCTCC	3 cut(s)	647, 681, 895
Lsp1109I	GCAGC	3 cut(s)	662, 665, 787
LweI	GCATC	6 cut(s)	76, 98, 296, 318, 619, 812
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	4 cut(s)	256, 342, 510, 618
MboI	GATC	4 cut(s)	254, 340, 508, 616
MboII	GAAGA	3 cut(s)	152, 567, 899
MhlI	GDGCHC	2 cut(s)	798, 900
MluCI	AATT	6 cut(s)	205, 315, 408, 554, 561, 757
MlyI	GAGTC	2 cut(s)	591, 740
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	6 cut(s)	108, 410, 437, 457, 509, 828
Mph1103I	ATGCAT	1 cut(s)	91
MseI	TTAA	4 cut(s)	204, 231, 320, 815
MslI	CAYNNNNRTG	1 cut(s)	446
MvnI	CGCG	3 cut(s)	34, 364, 770
MwoI	GCNNNNNNNGC	1 cut(s)	716
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	4 cut(s)	254, 340, 508, 616
NlaIII	CATG	2 cut(s)	445, 505
NsiI	ATGCAT	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	768
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	652, 655, 802
PleI	GAGTC	2 cut(s)	591, 739
PpsI	GAGTC	2 cut(s)	591, 739
PstNI	CAGNNNCTG	1 cut(s)	734
PsyI	GACNNNGTC	1 cut(s)	448
PteI	GCGCGC	1 cut(s)	768
RsaI	GTAC	3 cut(s)	435, 694, 857
RsaNI	GTAC	3 cut(s)	434, 693, 856
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	4 cut(s)	204, 231, 320, 815
SatI	GCNGC	3 cut(s)	651, 654, 801
Sau3AI	GATC	4 cut(s)	254, 340, 508, 616
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	2 cut(s)	591, 740
SduI	GDGCHC	2 cut(s)	798, 900
SfaNI	GCATC	6 cut(s)	76, 98, 296, 318, 619, 812
SfcI	CTRYAG	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	6 cut(s)	205, 315, 408, 554, 561, 757
SsiI	CCGC	1 cut(s)	810
SspI	AATATT	1 cut(s)	535
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	3 cut(s)	328, 397, 448
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	343
TasI	AATT	6 cut(s)	205, 315, 408, 554, 561, 757
TatI	WGTACW	2 cut(s)	692, 855
Tru1I	TTAA	4 cut(s)	204, 231, 320, 815
Tru9I	TTAA	4 cut(s)	204, 231, 320, 815
TscAI	CASTG	3 cut(s)	264, 331, 379
TseI	GCWGC	3 cut(s)	650, 653, 800
TspDTI	ATGAA	3 cut(s)	217, 545, 691
TspRI	CASTG	3 cut(s)	264, 331, 379
Tth111I	GACNNNGTC	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	694
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.