Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Forward (+)

34448213 .. 34449189

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1287700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTACCTCTGGCCATAAAGAACCTTCCACTTCAAGAGGTGGCTGGAGTGCTGCCATTTTCATCATCTTTGTTGAGGTGGCAGAGAGATTTGTTTACCTTGGCATGTCTGGTAACCTCGTCACATACCTCACAAATGAACTCCATGAGCCAATCCCCATGGCTACAAAGAATGTCAACACTTGGGTTGGAGTCTCCTATCTCCTCACAGTAATTGGAGCCTTCATAGCCGATGCCTATCTTGGTCGATTCAAAACCATCCTCGTCTCGTCTATCATTTACTGCTTCGCAACGGTGGTGTTGAACATTACAGTTTCAGTAATTCCTCTGCATTATCACAAAGCAATGTTCTTTGTAGCACTTTACATATTGTCAATTGGGCTAGCTGGCCACAGACCGTGTGCACAAACTTTTGCGGTTGACCAGTTTTGTGAGGACTCGCCAGAGGAAAAGAAGGCGAAGAGTTCGTTCTTCAACTGGTGGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

163

Amino Acids

18.09

Weight (kDa)

6.95

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	22 - 153	3.2e-06	Major Facilitator Superfamily
PTR2	PF00854	84 - 162	1.1e-12	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	416
AcoI	YGGCCR	2 cut(s)	13, 388
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	36, 253, 304, 475
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	199, 271
Alw44I	GTGCAC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	13, 388
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	406
BalI	TGGCCA	2 cut(s)	15, 390
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	266
BcoDI	GTCTC	2 cut(s)	199, 271
BfaI	CTAG	2 cut(s)	383, 487
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	223
BmtI	GCTAGC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	67
BsaBI	GATNNNNATC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	100, 159
Bse1I	ACTGG	2 cut(s)	424, 482
Bse3DI	GCAATG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	100, 159
BseGI	GGATG	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	351
BseNI	ACTGG	2 cut(s)	424, 482
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	15, 390
BsiHKAI	GWGCWC	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	199, 271
BsmBI	CGTCTC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	15, 390
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	15, 390
BspLI	GGNNCC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	2 cut(s)	424, 482
BssECI	CCNNGG	2 cut(s)	100, 159
BssT1I	CCWWGG	2 cut(s)	100, 159
Bst4CI	ACNGT	4 cut(s)	211, 295, 313, 399
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	384, 388
BstDSI	CCRYGG	1 cut(s)	159
BstEII	GGTNACC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	199, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	109
BstPI	GGTNACC	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	15, 390
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	258
Cac8I	GCNNGC	2 cut(s)	384, 388
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	3 cut(s)	106, 146, 160
CviQI	GTAC	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	13, 388
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	100, 159
Eco91I	GGTNACC	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	113
EcoT14I	CCWWGG	2 cut(s)	100, 159
ErhI	CCWWGG	2 cut(s)	100, 159
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	3 cut(s)	109, 149, 163
FaiI	YATR	7 cut(s)	18, 107, 127, 147, 161, 227, 368
FatI	CATG	3 cut(s)	105, 145, 159
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	383, 487
GluI	GCNGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	15, 390
Hin1II	CATG	3 cut(s)	109, 149, 163
HincII	GTYRAC	2 cut(s)	178, 421
HindII	GTYRAC	2 cut(s)	178, 421
HinfI	GANTC	3 cut(s)	192, 249, 437
Hpy166II	GTNNAC	4 cut(s)	97, 178, 404, 421
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	4 cut(s)	97, 178, 404, 421
HpyAV	CCTTC	3 cut(s)	36, 232, 448
HpyCH4III	ACNGT	4 cut(s)	211, 295, 313, 399
HpyCH4V	TGCA	2 cut(s)	331, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	109, 149, 163
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	6 cut(s)	31, 96, 372, 437, 456, 463
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	383, 487
MaeIII	GTNAC	2 cut(s)	113, 121
MboII	GAAGA	2 cut(s)	463, 472
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	2 cut(s)	15, 390
MluCI	AATT	3 cut(s)	213, 321, 375
MluNI	TGGCCA	2 cut(s)	15, 390
MlyI	GAGTC	2 cut(s)	201, 431
MmeI	TCCRAC	1 cut(s)	169
Mox20I	TGGCCA	2 cut(s)	15, 390
MscI	TGGCCA	2 cut(s)	15, 390
Msp20I	TGGCCA	2 cut(s)	15, 390
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	109, 149, 163
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	200, 431
PpsI	GAGTC	2 cut(s)	200, 431
PspEI	GGTNACC	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SatI	GCNGC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	201, 431
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	8 cut(s)	11, 28, 43, 81, 102, 120, 132, 388
SfaNI	GCATC	1 cut(s)	223
Sse9I	AATT	3 cut(s)	213, 321, 375
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	2 cut(s)	383, 487
StyI	CCWWGG	2 cut(s)	100, 159
TaaI	ACNGT	4 cut(s)	211, 295, 313, 399
TaqI	TCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	213, 321, 375
TfiI	GAWTC	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	52, 153, 214
VneI	GTGCAC	1 cut(s)	402
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	2 cut(s)	383, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.