RLG00000030223

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000830
Physical Location & Seq
Forward (+)
57915431 .. 57921269
5839 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030223

Sequence Viewer

Length: 1539 bp
ATGTACCTCACCAATGAGCTCCACCAGCCCACCGCTGCCGCCGCCAAGAACGTCAACTTGTGGATCGGCCTCTCCTCCCTCTTCCCCGTCCTCGGGGCCATCGTCGCCGATTCTTACCTCGGCCGCTTCAAGACAATCATCTACTCCACCTGCATTTATTTCGTGGGAATGGTTATGCTGTGCTTATCTGCTTCGGTGGTTCCTCGGCATTATCGTGAAGGGGCATACTTCGTGGGGCTTTACATTCTGGCGGTGGGAGAAGGCGGCCACAAGCCTTGCGTGCAGACCTTCGCCGCCGACCAGTTTGAGGAGGAGACAGATGAGGACAAGGAGGCTAAGAGCTCATTCTTCAACTGGTGGTATTTGGCTATAGTTGTCACCGCTACTGCTGCCACACTTGGTATCATCTATATTCAGGATAATGTGAGCTGGGTGCTGAGCTATAGTGTCTTGGCAGTGGTAATAGCAGGAGGCCTCCTATTATTTCTACTAGGAATCCGAAGGTATCGGAACGAGGATAATCTGTGGGGGAGCCCCTTCACAACGGTGGCACAAGTATTTGTGGCGGCAGCTCGGAAGTGGCGCGTAAAGACGGGTCGTCGGAATGATGTTGTCTACTACGGTGATGATGAGGGTGAGAGCAGTGGGGTTCACTCCAAGCACAAGACATTGGCTCGTACTGAACAATTCAGATTTCTGGACAAGGCAATGATTATTGACGAACATGATGCGTCAAGCAAAACGAGGAATCCTTGGAGTTTGTGCTCTGTAAATCAAGTGGAAGAAGTGAAGCTTGTTGTCCGTCTAATTCCCATATGGTTGAGCTGCCTAATGTTTCATGCAGTTCAATCTCAACTCCACACCTACTTTATCAAACAAGGTTCCACGATGATCAGATCCATCGGACCCAACTTTCGGTTCCCCCCTGCATCACTTCAAGCTCTAGTTGGCATCGTGATCGTAACTACCGTTCCAATATATGACCGAATTCTTGTCCCGACAGTACGAAAGTTCACAGGACATCCCGCGGGCATAACAGTCCTCCAACGAATTGGTGTGGGCCTATTCTTGTCCATAATCAACATGGTTGTGGCAGCTCTAGTGGAAGCTAAAAGGGTTGGTGTTGCAAGAGAATATAACCTCATGGATAACCCAAAAGCAATGGTACCAATCAGTGTCTGGTGGTTACTCCCACAATACTTTATCACTGGTTTGTCTGATGCATTCACCGTTATAGGACTCCAAGAGTTGTTCTATGATCAAATGCCAGATGCAATGAGAAGCTTGGGAGCTGCAGCATACATTAGTATTCTTGGAGTTGGAAGCTTTCTTAGCAGTTTCATCATATCCTTGGTGGAAACTATTACCAGAAACTCTGGTGAGCCGTGGTTAGGTAACAATCTCAATCGCGCACACCTTGATGACTTCTACTGGGTGCTTGCAGGACTAAGCGCTCTATTTTTCGGCGTTTATGTGTGGGTTGCAAAGCGATTTGTTTACAAGAAAGTTGTAGGGGAAGCATCAAGCGGGGAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

513

Amino Acids

57.06

Weight (kDa)

8.41

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 43 - 457 3.1e-91 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 1165
AccB1I GGYRCC 1 cut(s) 1165
AccI GTMKAC 1 cut(s) 615
AccII CGCG 3 cut(s) 585, 1028, 1410
AclWI GGATC 2 cut(s) 71, 891
AcoI YGGCCR 2 cut(s) 121, 265
AcsI RAATTY 1 cut(s) 987
AfaI GTAC 4 cut(s) 5, 679, 1005, 1167
AfeI AGCGCT 1 cut(s) 1453
AfiI CCNNNNNNNGG 5 cut(s) 92, 93, 307, 915, 1391
AgsI TTSAA 4 cut(s) 130, 352, 848, 938
AhdI GACNNNNNGTC 1 cut(s) 597
AjuI GAANNNNNNNTTGG 2 cut(s) 902, 934
AleI CACNNNNGTG 1 cut(s) 545
Alw21I GWGCWC 3 cut(s) 21, 344, 767
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 2 cut(s) 71, 891
AlwNI CAGNNNCTG 1 cut(s) 1179
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 1453
AoxI GGCC 6 cut(s) 67, 96, 121, 265, 472, 1060
ApeKI GCWGC 7 cut(s) 35, 389, 569, 825, 1094, 1292, 1295
ApoI RAATTY 1 cut(s) 987
ArsI GACNNNNNNTTYG 2 cut(s) 897, 929
Asp718I GGTACC 1 cut(s) 1165
AspLEI GCGC 3 cut(s) 585, 1412, 1454
AspS9I GGNCC 3 cut(s) 96, 905, 1060
AsuHPI GGTGA 5 cut(s) 370, 635, 647, 1219, 1391
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 905
BanI GGYRCC 1 cut(s) 1165
BanII GRGCYC 3 cut(s) 21, 344, 536
Bbv12I GWGCWC 3 cut(s) 21, 344, 767
BbvI GCAGC 7 cut(s) 22, 376, 581, 812, 1106, 1279, 1307
BccI CCATC 2 cut(s) 107, 908
BceAI ACGGC 1 cut(s) 1369
BcgI CGANNNNNNTGC 6 cut(s) 142, 176, 710, 744, 940, 974
BclI TGATCA 2 cut(s) 891, 1258
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 3 cut(s) 491, 944, 1100
BfmI CTRYAG 3 cut(s) 369, 442, 1293
BfoI RGCGCY 1 cut(s) 1455
BfuAI ACCTGC 1 cut(s) 158
BlpI GCTNAGC 1 cut(s) 437
Bme18I GGWCC 1 cut(s) 905
BmeRI GACNNNNNGTC 1 cut(s) 597
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 3 cut(s) 96, 905, 1060
BmiI GGNNCC 7 cut(s) 97, 201, 533, 883, 907, 920, 1167
BmrI ACTGGG 1 cut(s) 1441
BmsI GCATC 6 cut(s) 718, 938, 960, 1210, 1261, 1529
BmuI ACTGGG 1 cut(s) 1441
Bpu1102I GCTNAGC 1 cut(s) 437
BsaJI CCNNGG 7 cut(s) 91, 118, 203, 752, 1026, 1350, 1385
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 93, 307, 915, 1391
Bse1I ACTGG 4 cut(s) 301, 359, 1213, 1436
Bse3DI GCAATG 3 cut(s) 714, 1167, 1281
BseDI CCNNGG 7 cut(s) 91, 118, 203, 752, 1026, 1350, 1385
BseGI GGATG 1 cut(s) 1021
BseLI CCNNNNNNNGG 5 cut(s) 92, 93, 307, 915, 1391
BseMI GCAATG 3 cut(s) 714, 1167, 1281
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 4 cut(s) 301, 359, 1213, 1436
BseRI GAGGAG 3 cut(s) 64, 323, 326
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 7 cut(s) 22, 376, 581, 812, 1106, 1279, 1307
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 3 cut(s) 585, 1028, 1410
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 6 cut(s) 69, 98, 123, 267, 474, 1062
BshNI GGYRCC 1 cut(s) 1165
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 3 cut(s) 21, 344, 767
BsiHKCI CYCGRG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 5 cut(s) 92, 93, 307, 915, 1391
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 980
BsmI GAATGC 1 cut(s) 1223
BsnI GGCC 6 cut(s) 69, 98, 123, 267, 474, 1062
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 4 cut(s) 21, 344, 536, 767
Bsp143I GATC 5 cut(s) 63, 891, 896, 957, 1258
Bsp1720I GCTNAGC 1 cut(s) 437
BspANI GGCC 6 cut(s) 69, 98, 123, 267, 474, 1062
BspCNI CTCAG 1 cut(s) 429
BspFNI CGCG 3 cut(s) 585, 1028, 1410
BspLI GGNNCC 7 cut(s) 97, 201, 533, 883, 907, 920, 1167
BspMAI CTGCAG 1 cut(s) 1297
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 2 cut(s) 71, 891
BspT107I GGYRCC 1 cut(s) 1165
BsrDI GCAATG 3 cut(s) 714, 1167, 1281
BsrI ACTGG 4 cut(s) 301, 359, 1213, 1436
BssECI CCNNGG 7 cut(s) 91, 118, 203, 752, 1026, 1350, 1385
BssMI GATC 5 cut(s) 63, 891, 896, 957, 1258
BssT1I CCWWGG 2 cut(s) 752, 1350
Bst4CI ACNGT 6 cut(s) 547, 623, 970, 1003, 1039, 1231
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 281, 1030, 1440
BstDEI CTNAG 4 cut(s) 336, 437, 1331, 1448
BstDSI CCRYGG 2 cut(s) 1026, 1385
BstF5I GGATG 1 cut(s) 1021
BstFNI CGCG 3 cut(s) 585, 1028, 1410
BstH2I RGCGCY 1 cut(s) 1455
BstHHI GCGC 3 cut(s) 585, 1412, 1454
BstKTI GATC 5 cut(s) 66, 894, 899, 960, 1261
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 5 cut(s) 63, 891, 896, 957, 1258
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 6 cut(s) 25, 41, 104, 280, 389, 1332
BstSFI CTRYAG 3 cut(s) 369, 442, 1293
BstUI CGCG 3 cut(s) 585, 1028, 1410
BstV1I GCAGC 7 cut(s) 22, 376, 581, 812, 1106, 1279, 1307
BstX2I RGATCY 1 cut(s) 896
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 1 cut(s) 896
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 6 cut(s) 69, 98, 123, 267, 474, 1062
BtgI CCRYGG 2 cut(s) 1026, 1385
BtsCI GGATG 1 cut(s) 1021
BtsI GCAGTG 2 cut(s) 462, 649
BtsIMutI CAGTG 4 cut(s) 462, 649, 1180, 1206
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 3 cut(s) 281, 1030, 1440
CaiI CAGNNNCTG 1 cut(s) 1179
CfoI GCGC 3 cut(s) 585, 1412, 1454
Cfr13I GGNCC 3 cut(s) 96, 905, 1060
Cfr42I CCGCGG 1 cut(s) 1029
CseI GACGC 1 cut(s) 720
Csp6I GTAC 4 cut(s) 4, 678, 1004, 1166
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 4 cut(s) 725, 839, 1084, 1144
CviQI GTAC 4 cut(s) 4, 678, 1004, 1166
DdeI CTNAG 4 cut(s) 336, 437, 1331, 1448
DpnI GATC 5 cut(s) 65, 893, 898, 959, 1260
DpnII GATC 5 cut(s) 63, 891, 896, 957, 1258
DriI GACNNNNNGTC 1 cut(s) 597
EaeI YGGCCR 2 cut(s) 121, 265
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 86
Ecl136II GAGCTC 2 cut(s) 19, 342
EclXI CGGCCG 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 752, 1350
Eco147I AGGCCT 1 cut(s) 474
Eco24I GRGCYC 3 cut(s) 21, 344, 536
Eco47I GGWCC 1 cut(s) 905
Eco47III AGCGCT 1 cut(s) 1453
Eco52I CGGCCG 1 cut(s) 121
Eco53kI GAGCTC 2 cut(s) 19, 342
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 2 cut(s) 19, 342
EcoRI GAATTC 1 cut(s) 987
EcoT14I CCWWGG 2 cut(s) 752, 1350
EcoT22I ATGCAT 1 cut(s) 1225
EcoT38I GRGCYC 3 cut(s) 21, 344, 536
ErhI CCWWGG 2 cut(s) 752, 1350
FaeI CATG 4 cut(s) 728, 842, 1087, 1147
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 1 cut(s) 980
FatI CATG 4 cut(s) 724, 838, 1083, 1143
FauI CCCGC 3 cut(s) 1021, 1033, 1520
FauNDI CATATG 1 cut(s) 815
FbaI TGATCA 2 cut(s) 891, 1258
FblI GTMKAC 1 cut(s) 615
FokI GGATG 1 cut(s) 1008
FriOI GRGCYC 3 cut(s) 21, 344, 536
FspBI CTAG 3 cut(s) 491, 944, 1100
GlaI GCGC 3 cut(s) 584, 1411, 1453
GsaI CCCAGC 1 cut(s) 433
HaeII RGCGCY 1 cut(s) 1455
HaeIII GGCC 6 cut(s) 69, 98, 123, 267, 474, 1062
HgaI GACGC 1 cut(s) 720
HhaI GCGC 3 cut(s) 585, 1412, 1454
Hin1II CATG 4 cut(s) 728, 842, 1087, 1147
Hin6I GCGC 3 cut(s) 583, 1410, 1452
HinP1I GCGC 3 cut(s) 583, 1410, 1452
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 3 cut(s) 791, 1282, 1324
HinfI GANTC 4 cut(s) 110, 495, 748, 1239
HphI GGTGA 5 cut(s) 370, 635, 647, 1219, 1391
Hpy166II GTNNAC 5 cut(s) 55, 616, 652, 1014, 1498
Hpy188I TCNGA 8 cut(s) 500, 510, 576, 603, 692, 896, 905, 1219
Hpy188III TCNNGA 6 cut(s) 130, 215, 416, 698, 955, 997
Hpy8I GTNNAC 5 cut(s) 55, 616, 652, 1014, 1498
Hpy99I CGWCG 2 cut(s) 107, 603
HpyAV CCTTC 5 cut(s) 212, 254, 298, 495, 547
HpyCH4III ACNGT 6 cut(s) 547, 623, 970, 1003, 1039, 1231
HpyCH4IV ACGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 41, 104, 280, 389, 1332
HpyF3I CTNAG 4 cut(s) 336, 437, 1331, 1448
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 4 cut(s) 728, 842, 1087, 1147
HspAI GCGC 3 cut(s) 583, 1410, 1452
KpnI GGTACC 1 cut(s) 1169
Ksp22I TGATCA 2 cut(s) 891, 1258
KspI CCGCGG 1 cut(s) 1029
Kzo9I GATC 5 cut(s) 63, 891, 896, 957, 1258
LmnI GCTCC 3 cut(s) 24, 531, 1289
Lsp1109I GCAGC 7 cut(s) 22, 376, 581, 812, 1106, 1279, 1307
LweI GCATC 6 cut(s) 718, 938, 960, 1210, 1261, 1529
MaeI CTAG 3 cut(s) 491, 944, 1100
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 376, 961, 1185, 1394
MalI GATC 5 cut(s) 65, 893, 898, 959, 1260
MboI GATC 5 cut(s) 63, 891, 896, 957, 1258
MboII GAAGA 3 cut(s) 73, 340, 794
MflI RGATCY 1 cut(s) 896
MhlI GDGCHC 4 cut(s) 21, 344, 536, 767
MluCI AATT 4 cut(s) 686, 807, 987, 1050
MlyI GAGTC 1 cut(s) 1233
MmeI TCCRAC 3 cut(s) 581, 1069, 1300
Mph1103I ATGCAT 1 cut(s) 1225
MslI CAYNNNNRTG 4 cut(s) 213, 545, 1088, 1419
MspA1I CMGCKG 2 cut(s) 35, 1028
Mva1269I GAATGC 1 cut(s) 1223
MvnI CGCG 3 cut(s) 585, 1028, 1410
MwoI GCNNNNNNNGC 6 cut(s) 25, 41, 104, 280, 389, 1332
NdeI CATATG 1 cut(s) 815
NdeII GATC 5 cut(s) 63, 891, 896, 957, 1258
NlaIII CATG 4 cut(s) 728, 842, 1087, 1147
NlaIV GGNNCC 7 cut(s) 97, 201, 533, 883, 907, 920, 1167
NmeAIII GCCGAG 2 cut(s) 99, 184
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 1225
OliI CACNNNNGTG 1 cut(s) 545
PaqCI CACCTGC 1 cut(s) 158
PceI AGGCCT 1 cut(s) 474
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 211, 966
PctI GAATGC 1 cut(s) 1223
PfeI GAWTC 3 cut(s) 110, 495, 748
PleI GAGTC 1 cut(s) 1233
PpsI GAGTC 1 cut(s) 1233
Psp124BI GAGCTC 2 cut(s) 21, 344
PspFI CCCAGC 1 cut(s) 429
PspN4I GGNNCC 7 cut(s) 97, 201, 533, 883, 907, 920, 1167
PspPI GGNCC 3 cut(s) 96, 905, 1060
PsrI GAACNNNNNNTAC 2 cut(s) 954, 986
PstI CTGCAG 1 cut(s) 1297
PstNI CAGNNNCTG 1 cut(s) 1179
PsuI RGATCY 1 cut(s) 896
RsaI GTAC 4 cut(s) 5, 679, 1005, 1167
RsaNI GTAC 4 cut(s) 4, 678, 1004, 1166
RseI CAYNNNNRTG 4 cut(s) 213, 545, 1088, 1419
SacI GAGCTC 2 cut(s) 21, 344
SacII CCGCGG 1 cut(s) 1029
Sau3AI GATC 5 cut(s) 63, 891, 896, 957, 1258
Sau96I GGNCC 3 cut(s) 96, 905, 1060
SchI GAGTC 1 cut(s) 1233
SduI GDGCHC 4 cut(s) 21, 344, 536, 767
SfaNI GCATC 6 cut(s) 718, 938, 960, 1210, 1261, 1529
SfcI CTRYAG 3 cut(s) 369, 442, 1293
Sfr303I CCGCGG 1 cut(s) 1029
SgrBI CCGCGG 1 cut(s) 1029
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 4 cut(s) 213, 545, 1088, 1419
Sse9I AATT 4 cut(s) 686, 807, 987, 1050
SseBI AGGCCT 1 cut(s) 474
SspMI CTAG 3 cut(s) 491, 944, 1100
SstI GAGCTC 2 cut(s) 21, 344
StuI AGGCCT 1 cut(s) 474
StyI CCWWGG 2 cut(s) 752, 1350
TaaI ACNGT 6 cut(s) 547, 623, 970, 1003, 1039, 1231
TaiI ACGT 1 cut(s) 54
TaqII GACCGA 1 cut(s) 999
TasI AATT 4 cut(s) 686, 807, 987, 1050
TauI GCSGC 6 cut(s) 41, 44, 126, 267, 296, 569
TfiI GAWTC 3 cut(s) 110, 495, 748
TscAI CASTG 4 cut(s) 462, 649, 1180, 1213
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 7 cut(s) 35, 389, 569, 825, 1094, 1292, 1295
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 827, 1330
TspGWI ACGGA 1 cut(s) 791
TspRI CASTG 4 cut(s) 462, 649, 1180, 1213
VpaK11BI GGWCC 1 cut(s) 905
XapI RAATTY 1 cut(s) 987
XcmI CCANNNNNNNNNTGG 2 cut(s) 1081, 1176
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 3 cut(s) 491, 944, 1100
Zsp2I ATGCAT 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.