RLG00000030225

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000830
Physical Location & Seq
Forward (+)
57956786 .. 57961198
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030225

Sequence Viewer

Length: 1362 bp
ATGGGAATGGTTTTACTATGCCTATCCGTCTCCAGTGTTCCTATTCATTATCGTGAAGCAGTGTTCTTTGTTGCGCTTTACATTTTGTCAGTAGGCGAAGGTGGGCACAAGCCTTGCGTCCAAACATTTGCTGCAGATCAGTTTGATGAGGACACCCCCGATCAGAAAAGGACAAAGAGCTCATTCTTCAACTGGTGGTTCTTGGTGATAGTAATGGCGGGCACTAGTTCAACACTTGTGGTCATCTACATTCAGGATAATGTTAGCTGGGTGATAGGCTTTGGTATGTTGGCTGTGGTACAGGCAGTGGGCCTGTTGCTATTTTTACTAGGAATCAAGAGATATATGAAGGAAGGACCGCTTGGAAGCGCCTTTACCACCGTGGCACAAGTTTTCGTGGCGGCAGCAAGGAAGTGGCGTGTGGATGAGACGCTTTATTCTGATATTTTCTACGAGGATGAGAGTGGATCTCATCAGTGTAAGCAGAAAACTTTAGCTCGAACTAACCAATTCAGATTTTTGGACAAGGCAATGATTATTGACAACCTTGATGCATCAAAGAACATCAGAAACCCTTGGAGGCTATGCTCTCTAAATCAAGTGGAAGAAGTGAAGCTGGTTTTCCGTCTTATTCCCATATGGTTCTGTTGCCTAATGTTCTTCGCAGTTCAATCGCAACTCCATACCTACTTCACGAAACAAGGCTCCATGATGATCAGATCCATCGGATCCCACTTTTGCCTTCCCCCCGCATCACTCCAAGCCCTAGTCGGCATCATGATCATTATCACCGTCCCAATCTATGACCGGATTATTGTCCCAAAAGTACGAGAGTTCACAGGACATCCAGCGGGCATAATGGTGCTTCAACGAATTGGGGTTGGCCTATTCTTGTCCGTAGTCAACATGGTTGTGGCAGCTCTAGTGGAAGCCAAAAGGGTTTGTGTTGCAAGAGAACATAACCTCATGGATGACCCTGAGGCAATAGTACCAATGAGAGTATGGTGGTTGCTCCCACAATACATACTAACCGGTATGTCAGACGCATTCACGGTTGTAGGACTCCAGGAATTGTTCTATGATCAAATGCCAGATGCAATGAGGAGCTTGGGAGCTGCTGCGTACATTAGCATTCTTGGAGTTGGAAGCTTTGTTAGCAGTTTCATCATATCTTTGGTGGAAACTATTAGCAGAAACTGTGGTAAGCCATGGTTAGGTAACAATATCAACCGAGCGCACCTTGATGACTTCTACTGGGTACTTGCAGGACTAAGCGCTCTATTTTTTGGTGTTTATGTGTGGGTTGCAACATGTTTTCTGTACAAGAAAGTTGTTGGGGAAGAAACAAGTGGGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

454

Amino Acids

50.83

Weight (kDa)

7.06

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 398 1.1e-83 POT family
MFS_1 PF07690 2 - 386 7.3e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 218, 359, 401, 750, 851
AclWI GGATC 4 cut(s) 475, 714, 723, 736
AfaI GTAC 6 cut(s) 300, 828, 990, 1124, 1260, 1322
AfeI AGCGCT 1 cut(s) 1276
AfiI CCNNNNNNNGG 1 cut(s) 1214
AflIII ACRYGT 1 cut(s) 1310
AgeI ACCGGT 1 cut(s) 1031
AgsI TTSAA 4 cut(s) 190, 231, 671, 869
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 8 cut(s) 180, 267, 497, 616, 920, 1107, 1115, 1149
AluI AGCT 8 cut(s) 180, 267, 497, 616, 920, 1107, 1115, 1149
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 34, 422
AlwI GGATC 4 cut(s) 475, 714, 723, 736
AlwNI CAGNNNCTG 1 cut(s) 1197
Aor51HI AGCGCT 1 cut(s) 1276
AoxI GGCC 2 cut(s) 310, 883
ApeKI GCWGC 5 cut(s) 131, 404, 917, 1115, 1118
AsiGI ACCGGT 1 cut(s) 1031
AspLEI GCGC 4 cut(s) 76, 371, 1237, 1277
AspS9I GGNCC 2 cut(s) 310, 356
AsuHPI GGTGA 3 cut(s) 217, 283, 781
AvaII GGWCC 1 cut(s) 356
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 2 cut(s) 108, 224
BamHI GGATCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 358, 390
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 5 cut(s) 118, 416, 929, 1102, 1105
BccI CCATC 1 cut(s) 731
BcgI CGANNNNNNTGC 2 cut(s) 654, 688
BciT130I CCWGG 1 cut(s) 1067
BclI TGATCA 3 cut(s) 714, 780, 1081
BcoDI GTCTC 2 cut(s) 34, 422
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 4 cut(s) 225, 329, 767, 923
BfmI CTRYAG 1 cut(s) 132
BfoI RGCGCY 2 cut(s) 372, 1278
BisI GCNGC 6 cut(s) 132, 402, 405, 918, 1116, 1119
BlsI GCNGC 6 cut(s) 133, 403, 406, 919, 1117, 1120
Bme1390I CCNGG 1 cut(s) 1067
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 310, 356
BmiI GGNNCC 2 cut(s) 706, 730
BmrFI CCNGG 1 cut(s) 1067
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 5 cut(s) 541, 563, 761, 783, 1084
BmuI ACTGGG 1 cut(s) 1264
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpmI CTGGAG 2 cut(s) 16, 1049
BsaBI GATNNNNATC 1 cut(s) 785
BsaJI CCNNGG 3 cut(s) 381, 575, 1208
BsaWI WCCGGW 2 cut(s) 807, 1031
Bsc4I CCNNNNNNNGG 1 cut(s) 1214
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 3 cut(s) 33, 197, 1259
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 537, 1104
Bse8I GATNNNNATC 1 cut(s) 785
BseBI CCWGG 1 cut(s) 1067
BseDI CCNNGG 3 cut(s) 381, 575, 1208
BseGI GGATG 4 cut(s) 430, 463, 844, 976
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 1 cut(s) 1214
BseMI GCAATG 2 cut(s) 537, 1104
BseMII CTCAG 1 cut(s) 969
BseNI ACTGG 3 cut(s) 33, 197, 1259
BseRI GAGGAG 1 cut(s) 1117
BseSI GKGCMC 2 cut(s) 108, 224
BseXI GCAGC 5 cut(s) 118, 416, 929, 1102, 1105
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 312, 885
BshTI ACCGGT 1 cut(s) 1031
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 808, 1032
BslFI GGGAC 2 cut(s) 779, 803
BslI CCNNNNNNNGG 1 cut(s) 1214
BsmAI GTCTC 2 cut(s) 34, 422
BsmBI CGTCTC 2 cut(s) 34, 422
BsmFI GGGAC 2 cut(s) 779, 803
BsmI GAATGC 2 cut(s) 1046, 1131
BsnI GGCC 2 cut(s) 312, 885
Bsp1286I GDGCHC 3 cut(s) 108, 182, 224
Bsp1407I TGTACA 1 cut(s) 1320
Bsp143I GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
Bsp19I CCATGG 1 cut(s) 1208
BspACI CCGC 5 cut(s) 218, 359, 401, 750, 851
BspANI GGCC 2 cut(s) 312, 885
BspCNI CTCAG 1 cut(s) 970
BspHI TCATGA 1 cut(s) 777
BspLI GGNNCC 2 cut(s) 706, 730
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 4 cut(s) 475, 714, 723, 736
BsrDI GCAATG 2 cut(s) 537, 1104
BsrFI RCCGGY 1 cut(s) 1031
BsrGI TGTACA 1 cut(s) 1320
BsrI ACTGG 3 cut(s) 33, 197, 1259
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 3 cut(s) 381, 575, 1208
BssMI GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
BssT1I CCWWGG 2 cut(s) 575, 1208
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 4 cut(s) 382, 793, 1054, 1199
BstAUI TGTACA 1 cut(s) 1320
BstC8I GCNNGC 2 cut(s) 220, 853
BstDEI CTNAG 2 cut(s) 978, 1271
BstDSI CCRYGG 2 cut(s) 381, 1208
BstF5I GGATG 4 cut(s) 430, 463, 844, 976
BstH2I RGCGCY 2 cut(s) 372, 1278
BstHHI GCGC 4 cut(s) 76, 371, 1237, 1277
BstKTI GATC 8 cut(s) 139, 163, 470, 717, 722, 731, 783, 1084
BstMAI GTCTC 2 cut(s) 34, 422
BstMBI GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
BstMWI GCNNNNNNNGC 1 cut(s) 1155
BstNI CCWGG 1 cut(s) 1067
BstNSI RCATGY 1 cut(s) 1314
BstSCI CCNGG 1 cut(s) 1065
BstSFI CTRYAG 1 cut(s) 132
BstSLI GKGCMC 2 cut(s) 108, 224
BstV1I GCAGC 5 cut(s) 118, 416, 929, 1102, 1105
BstX2I RGATCY 3 cut(s) 467, 719, 728
BstYI RGATCY 3 cut(s) 467, 719, 728
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 2 cut(s) 312, 885
BtgI CCRYGG 2 cut(s) 381, 1208
BtsCI GGATG 4 cut(s) 430, 463, 844, 976
BtsI GCAGTG 2 cut(s) 66, 312
BtsIMutI CAGTG 4 cut(s) 40, 66, 312, 482
Cac8I GCNNGC 2 cut(s) 220, 853
CaiI CAGNNNCTG 1 cut(s) 1197
CciI TCATGA 1 cut(s) 777
CfoI GCGC 4 cut(s) 76, 371, 1237, 1277
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 2 cut(s) 310, 356
CseI GACGC 3 cut(s) 106, 439, 1052
Csp6I GTAC 6 cut(s) 299, 827, 989, 1123, 1259, 1321
CspAI ACCGGT 1 cut(s) 1031
CspCI CAANNNNNGTGG 3 cut(s) 219, 254, 1335
CviAII CATG 6 cut(s) 709, 778, 907, 967, 1209, 1311
CviQI GTAC 6 cut(s) 299, 827, 989, 1123, 1259, 1321
DdeI CTNAG 2 cut(s) 978, 1271
DpnI GATC 8 cut(s) 138, 162, 469, 716, 721, 730, 782, 1083
DpnII GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 575, 1208
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 356
Eco47III AGCGCT 1 cut(s) 1276
Eco53kI GAGCTC 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 978
EcoICRI GAGCTC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 1065
EcoT14I CCWWGG 2 cut(s) 575, 1208
EcoT22I ATGCAT 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 575, 1208
Esp3I CGTCTC 2 cut(s) 34, 422
FaeI CATG 6 cut(s) 712, 781, 910, 970, 1212, 1314
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FaqI GGGAC 2 cut(s) 779, 803
FatI CATG 6 cut(s) 708, 777, 906, 966, 1208, 1310
FauI CCCGC 3 cut(s) 211, 757, 844
FauNDI CATATG 1 cut(s) 638
FbaI TGATCA 3 cut(s) 714, 780, 1081
Fnu4HI GCNGC 6 cut(s) 132, 402, 405, 918, 1116, 1119
FokI GGATG 4 cut(s) 437, 470, 831, 983
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 6 cut(s) 132, 402, 405, 918, 1116, 1119
FspBI CTAG 4 cut(s) 225, 329, 767, 923
GlaI GCGC 4 cut(s) 75, 370, 1236, 1276
GluI GCNGC 6 cut(s) 132, 402, 405, 918, 1116, 1119
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 16, 1049
HaeII RGCGCY 2 cut(s) 372, 1278
HaeIII GGCC 2 cut(s) 312, 885
HapII CCGG 2 cut(s) 808, 1032
HgaI GACGC 3 cut(s) 106, 439, 1052
HhaI GCGC 4 cut(s) 76, 371, 1237, 1277
Hin1II CATG 6 cut(s) 712, 781, 910, 970, 1212, 1314
Hin6I GCGC 4 cut(s) 74, 369, 1235, 1275
HinP1I GCGC 4 cut(s) 74, 369, 1235, 1275
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 1 cut(s) 1147
HinfI GANTC 2 cut(s) 333, 1062
HpaII CCGG 2 cut(s) 808, 1032
HphI GGTGA 3 cut(s) 217, 283, 781
Hpy166II GTNNAC 3 cut(s) 837, 904, 1357
Hpy188I TCNGA 7 cut(s) 165, 442, 515, 569, 719, 728, 1042
Hpy188III TCNNGA 5 cut(s) 53, 254, 337, 694, 778
Hpy8I GTNNAC 3 cut(s) 837, 904, 1357
HpyAV CCTTC 4 cut(s) 92, 343, 347, 752
HpyCH4III ACNGT 4 cut(s) 382, 793, 1054, 1199
HpyCH4V TGCA 6 cut(s) 134, 554, 950, 1097, 1265, 1307
HpyF10VI GCNNNNNNNGC 1 cut(s) 1155
HpyF3I CTNAG 2 cut(s) 978, 1271
Hsp92II CATG 6 cut(s) 712, 781, 910, 970, 1212, 1314
HspAI GCGC 4 cut(s) 74, 369, 1235, 1275
Ksp22I TGATCA 3 cut(s) 714, 780, 1081
Kzo9I GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
LmnI GCTCC 4 cut(s) 710, 1017, 1104, 1112
Lsp1109I GCAGC 5 cut(s) 118, 416, 929, 1102, 1105
LweI GCATC 5 cut(s) 541, 563, 761, 783, 1084
MaeI CTAG 4 cut(s) 225, 329, 767, 923
MaeIII GTNAC 1 cut(s) 1217
MalI GATC 8 cut(s) 138, 162, 469, 716, 721, 730, 782, 1083
MboI GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
MboII GAAGA 4 cut(s) 178, 617, 652, 1352
MflI RGATCY 3 cut(s) 467, 719, 728
MhlI GDGCHC 3 cut(s) 108, 182, 224
MluCI AATT 3 cut(s) 509, 873, 1070
MlyI GAGTC 1 cut(s) 1056
MmeI TCCRAC 1 cut(s) 1123
MnlI CCTC 6 cut(s) 142, 448, 573, 973, 974, 1095
Mph1103I ATGCAT 1 cut(s) 556
MslI CAYNNNNRTG 4 cut(s) 51, 860, 911, 1242
MspA1I CMGCKG 1 cut(s) 851
MspI CCGG 2 cut(s) 808, 1032
MspR9I CCNGG 1 cut(s) 1067
Mva1269I GAATGC 2 cut(s) 1046, 1131
MvaI CCWGG 1 cut(s) 1067
MwoI GCNNNNNNNGC 1 cut(s) 1155
NcoI CCATGG 1 cut(s) 1208
NdeI CATATG 1 cut(s) 638
NdeII GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
NlaIII CATG 6 cut(s) 712, 781, 910, 970, 1212, 1314
NlaIV GGNNCC 2 cut(s) 706, 730
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 1314
PagI TCATGA 1 cut(s) 777
PciI ACATGT 1 cut(s) 1310
PctI GAATGC 2 cut(s) 1046, 1131
PfeI GAWTC 1 cut(s) 333
PfoI TCCNGGA 1 cut(s) 1065
PinAI ACCGGT 1 cut(s) 1031
PkrI GCNGC 6 cut(s) 133, 403, 406, 919, 1117, 1120
PleI GAGTC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 1056
PscI ACATGT 1 cut(s) 1310
Psp124BI GAGCTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 1065
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 2 cut(s) 706, 730
PspPI GGNCC 2 cut(s) 310, 356
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 1197
PsuI RGATCY 3 cut(s) 467, 719, 728
RsaI GTAC 6 cut(s) 300, 828, 990, 1124, 1260, 1322
RsaNI GTAC 6 cut(s) 299, 827, 989, 1123, 1259, 1321
RseI CAYNNNNRTG 4 cut(s) 51, 860, 911, 1242
SacI GAGCTC 1 cut(s) 182
SatI GCNGC 6 cut(s) 132, 402, 405, 918, 1116, 1119
Sau3AI GATC 8 cut(s) 136, 160, 467, 714, 719, 728, 780, 1081
Sau96I GGNCC 2 cut(s) 310, 356
SchI GAGTC 1 cut(s) 1056
ScrFI CCNGG 1 cut(s) 1067
SduI GDGCHC 3 cut(s) 108, 182, 224
SfaNI GCATC 5 cut(s) 541, 563, 761, 783, 1084
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 4 cut(s) 51, 860, 911, 1242
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 3 cut(s) 509, 873, 1070
SsiI CCGC 5 cut(s) 218, 359, 401, 750, 851
SspMI CTAG 4 cut(s) 225, 329, 767, 923
SstI GAGCTC 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 1065
StyI CCWWGG 2 cut(s) 575, 1208
TaaI ACNGT 4 cut(s) 382, 793, 1054, 1199
TaqI TCGA 1 cut(s) 499
TasI AATT 3 cut(s) 509, 873, 1070
TatI WGTACW 1 cut(s) 1320
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 1 cut(s) 333
TscAI CASTG 4 cut(s) 40, 66, 312, 482
TseI GCWGC 5 cut(s) 131, 404, 917, 1115, 1118
TspDTI ATGAA 3 cut(s) 35, 362, 1153
TspGWI ACGGA 3 cut(s) 16, 614, 886
TspRI CASTG 4 cut(s) 40, 66, 312, 482
VpaK11BI GGWCC 1 cut(s) 356
XceI RCATGY 1 cut(s) 1314
XcmI CCANNNNNNNNNTGG 1 cut(s) 999
XspI CTAG 4 cut(s) 225, 329, 767, 923
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.