Rh1BG050700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000830
Physical Location & Seq
Reverse (-)
6956904 .. 6957734
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG050700.1

Sequence Viewer

Length: 831 bp
ATGATTATTGACAACCTTGATGCATCAAAGAACATCAGAAACCCTTGGAGGCTATGCTCTCTAAATCAAGTGGAAGAAGTGAAGCTGGTTCTCCGTCTTATTCCCATATGGTTCTGTTGCCTAATGTTCTTTGCTGTTCAATCGCAACTCCATACCTACTTCACGAAACAAGGCTCCATGATGATCAGATCCATCGGATCCCGCTTTTGCCTTCCCCCCGCATCACTCCAAGCCCTAGTCGGCATCGTGATCGTTATCACCGTCCCAATCTATGACCGGATTATTGTCCCAAAAGTACGAGAGTTCACAGGACATCCAGCGGGCATAATGGTGCTTCAACGAATTGGGGTTGGCCTATTCTTGTCCGTAGTCAACATGGTTGTGGCAGCTCTGGTGGAAGCCAAAAGGGTTAGTGTTGCAAGAGAACATGACCTCATGGATGATCCTGAGGCAATAGTACCAATAAGAGTATGGTGGCTGCTCCCACAATACATACTAACCGGTATGTCAGACGCATTCACGGTTGTAGGACTCCAGGAATTGTTCTATCATCAAATGCCAGATGCAATGAGGAGCTTGGGAGCTGCTGCGTACATTAGCATTCTTGGAGTTGGAAGCTTTGTTAGCAGTTTCATCATATCATTGGTGGAAACTATTAGCAGAAACTCTGGTGAGCCGTGGTTAGGTAACAATATCAACCGAACGCACCTTAATGACTTCTACTGGGTACTTGCAGGACTAAGCGCTCTATTTTTTGGTGTTTATATGTGGGTTGCAACATGTTTTGTGTACAAGAAAGTTGTTGGGGAAGAAACAAGTGGGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

276

Amino Acids

30.92

Weight (kDa)

6.95

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 3 - 221 4.6e-48 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 202, 219, 320
AclWI GGATC 4 cut(s) 183, 192, 205, 437
AfaI GTAC 5 cut(s) 297, 459, 593, 729, 791
AfeI AGCGCT 1 cut(s) 745
AfiI CCNNNNNNNGG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 779
AgeI ACCGGT 1 cut(s) 500
AgsI TTSAA 2 cut(s) 140, 338
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 5 cut(s) 85, 389, 576, 584, 618
AluI AGCT 5 cut(s) 85, 389, 576, 584, 618
AlwI GGATC 4 cut(s) 183, 192, 205, 437
Aor51HI AGCGCT 1 cut(s) 745
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 4 cut(s) 386, 478, 584, 587
AsiGI ACCGGT 1 cut(s) 500
AspLEI GCGC 1 cut(s) 746
AsuHPI GGTGA 2 cut(s) 250, 683
AxyI CCTNAGG 1 cut(s) 447
BamHI GGATCC 1 cut(s) 197
BbvI GCAGC 4 cut(s) 398, 465, 571, 574
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 661
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 1 cut(s) 536
BclI TGATCA 1 cut(s) 183
BfaI CTAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 747
BisI GCNGC 4 cut(s) 387, 479, 585, 588
BlsI GCNGC 4 cut(s) 388, 480, 586, 589
Bme1390I CCNGG 1 cut(s) 536
BmiI GGNNCC 2 cut(s) 175, 199
BmrFI CCNGG 1 cut(s) 536
BmrI ACTGGG 1 cut(s) 733
BmsI GCATC 5 cut(s) 10, 32, 230, 252, 553
BmuI ACTGGG 1 cut(s) 733
BpmI CTGGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 44, 677
BsaWI WCCGGW 2 cut(s) 276, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 44, 677
BseGI GGATG 2 cut(s) 313, 445
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 4 cut(s) 398, 465, 571, 574
BshFI GGCC 1 cut(s) 354
BshTI ACCGGT 1 cut(s) 500
BsiSI CCGG 2 cut(s) 277, 501
BslFI GGGAC 2 cut(s) 248, 272
BslI CCNNNNNNNGG 1 cut(s) 683
BsmFI GGGAC 2 cut(s) 248, 272
BsmI GAATGC 2 cut(s) 515, 600
BsnI GGCC 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 5 cut(s) 183, 188, 197, 249, 442
BspACI CCGC 3 cut(s) 202, 219, 320
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 175, 199
BspPI GGATC 4 cut(s) 183, 192, 205, 437
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 500
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 1 cut(s) 728
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 2 cut(s) 44, 677
BssMI GATC 5 cut(s) 183, 188, 197, 249, 442
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 262, 523
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 447, 740
BstDSI CCRYGG 1 cut(s) 677
BstF5I GGATG 2 cut(s) 313, 445
BstH2I RGCGCY 1 cut(s) 747
BstHHI GCGC 1 cut(s) 746
BstKTI GATC 5 cut(s) 186, 191, 200, 252, 445
BstMBI GATC 5 cut(s) 183, 188, 197, 249, 442
BstMWI GCNNNNNNNGC 1 cut(s) 624
BstNI CCWGG 1 cut(s) 536
BstNSI RCATGY 1 cut(s) 783
BstSCI CCNGG 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 398, 465, 571, 574
BstX2I RGATCY 2 cut(s) 188, 197
BstYI RGATCY 2 cut(s) 188, 197
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 1 cut(s) 354
BtgI CCRYGG 1 cut(s) 677
BtsCI GGATG 2 cut(s) 313, 445
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 746
Cfr10I RCCGGY 1 cut(s) 500
CseI GACGC 1 cut(s) 521
Csp6I GTAC 5 cut(s) 296, 458, 592, 728, 790
CspAI ACCGGT 1 cut(s) 500
CspCI CAANNNNNGTGG 1 cut(s) 804
CviAII CATG 5 cut(s) 178, 376, 428, 436, 780
CviQI GTAC 5 cut(s) 296, 458, 592, 728, 790
DdeI CTNAG 2 cut(s) 447, 740
DpnI GATC 5 cut(s) 185, 190, 199, 251, 444
DpnII GATC 5 cut(s) 183, 188, 197, 249, 442
Eco130I CCWWGG 1 cut(s) 44
Eco47III AGCGCT 1 cut(s) 745
Eco81I CCTNAGG 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 44
EcoT22I ATGCAT 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 5 cut(s) 181, 379, 431, 439, 783
FaqI GGGAC 2 cut(s) 248, 272
FatI CATG 5 cut(s) 177, 375, 427, 435, 779
FauI CCCGC 3 cut(s) 209, 226, 313
FauNDI CATATG 1 cut(s) 107
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 387, 479, 585, 588
FokI GGATG 2 cut(s) 300, 452
Fsp4HI GCNGC 4 cut(s) 387, 479, 585, 588
FspBI CTAG 1 cut(s) 236
GlaI GCGC 1 cut(s) 745
GluI GCNGC 4 cut(s) 387, 479, 585, 588
GsuI CTGGAG 1 cut(s) 518
HaeII RGCGCY 1 cut(s) 747
HaeIII GGCC 1 cut(s) 354
HapII CCGG 2 cut(s) 277, 501
HgaI GACGC 1 cut(s) 521
HhaI GCGC 1 cut(s) 746
Hin1II CATG 5 cut(s) 181, 379, 431, 439, 783
Hin6I GCGC 1 cut(s) 744
HinP1I GCGC 1 cut(s) 744
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 1 cut(s) 531
HpaII CCGG 2 cut(s) 277, 501
HphI GGTGA 2 cut(s) 250, 683
Hpy166II GTNNAC 4 cut(s) 306, 373, 790, 826
Hpy188I TCNGA 4 cut(s) 38, 188, 197, 511
Hpy188III TCNNGA 3 cut(s) 163, 247, 446
Hpy8I GTNNAC 4 cut(s) 306, 373, 790, 826
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 2 cut(s) 262, 523
HpyCH4V TGCA 5 cut(s) 23, 419, 566, 734, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 624
HpyF3I CTNAG 2 cut(s) 447, 740
Hsp92II CATG 5 cut(s) 181, 379, 431, 439, 783
HspAI GCGC 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 5 cut(s) 183, 188, 197, 249, 442
LmnI GCTCC 4 cut(s) 179, 486, 573, 581
Lsp1109I GCAGC 4 cut(s) 398, 465, 571, 574
LweI GCATC 5 cut(s) 10, 32, 230, 252, 553
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 686
MalI GATC 5 cut(s) 185, 190, 199, 251, 444
MboI GATC 5 cut(s) 183, 188, 197, 249, 442
MboII GAAGA 2 cut(s) 86, 821
MflI RGATCY 2 cut(s) 188, 197
MluCI AATT 2 cut(s) 342, 539
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 4 cut(s) 42, 442, 443, 564
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 3 cut(s) 329, 380, 711
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 2 cut(s) 277, 501
MspR9I CCNGG 1 cut(s) 536
Mva1269I GAATGC 2 cut(s) 515, 600
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 624
NdeI CATATG 1 cut(s) 107
NdeII GATC 5 cut(s) 183, 188, 197, 249, 442
NlaIII CATG 5 cut(s) 181, 379, 431, 439, 783
NlaIV GGNNCC 2 cut(s) 175, 199
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 1 cut(s) 783
PciI ACATGT 1 cut(s) 779
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 515, 600
PfoI TCCNGGA 1 cut(s) 534
PinAI ACCGGT 1 cut(s) 500
PkrI GCNGC 4 cut(s) 388, 480, 586, 589
PleI GAGTC 1 cut(s) 525
PpsI GAGTC 1 cut(s) 525
PscI ACATGT 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 2 cut(s) 175, 199
PsuI RGATCY 2 cut(s) 188, 197
RsaI GTAC 5 cut(s) 297, 459, 593, 729, 791
RsaNI GTAC 5 cut(s) 296, 458, 592, 728, 790
RseI CAYNNNNRTG 3 cut(s) 329, 380, 711
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 4 cut(s) 387, 479, 585, 588
Sau3AI GATC 5 cut(s) 183, 188, 197, 249, 442
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 1 cut(s) 536
SfaNI GCATC 5 cut(s) 10, 32, 230, 252, 553
SmiMI CAYNNNNRTG 3 cut(s) 329, 380, 711
Sse9I AATT 2 cut(s) 342, 539
SsiI CCGC 3 cut(s) 202, 219, 320
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 534
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 262, 523
TasI AATT 2 cut(s) 342, 539
TatI WGTACW 1 cut(s) 789
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TseI GCWGC 4 cut(s) 386, 478, 584, 587
TspDTI ATGAA 1 cut(s) 622
TspGWI ACGGA 2 cut(s) 83, 355
XceI RCATGY 1 cut(s) 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 468
XspI CTAG 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.