RLG00000030226

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000830
Physical Location & Seq
Forward (+)
58006237 .. 58008540
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030226

Sequence Viewer

Length: 834 bp
ATGTGGGAGATTGCAGTGGCGGGTTGTGAGGCGAGGAAGGGGAAGATTGAGGTGGTGGCCGGATTGTGGTTTGTCCCTCGCTGGCCTGGTCGGTGGATTGGCTTGGTGGCGCTAGGTTGGAGATTGCTGGGTGGTGTCGTGCTCATGGCAGCGTGGTCTGGATATGCTCAACTCAGTCTGATCTGGATCAGGTCTATCCGATCTTATCTGGGGATGAAGTTGTTATGCAGGGGGAGGGCATTTCCATGGCGTGGTAGGGATGGCAAGATGATGTTGGGTGGTGCCGTGGTCATGGAGGCACGGCTCGTTGTAGAGGCAGTGGAGAGGTTTGCATATTATGGCTTGTCCAGTAAGCTCATTATGTACCTCACAAATTATCTCCACCAGCCCACAGCCATGAACGTCAACACATGGGTTGGTGTGTCCTCACTCTTTCCTCTTCTTGGTGCCATAGTAGCCGACTGCTTCCTTGGTCGGTTCAAGACCATCATTTTCTCCACCTTCATTTATTTCATGGGAATGGTTTTACTTTGCCTATCGGTCTCCATTATTCCTATCCATTATCGTGAAGTGGTGTTCTTCGTCGCACTTTACATTTTGTCAGTAAGCGAAGGTGGGCACAAGCCATCCGTCCAAACATTTGCCGCAGATCAGTTTGATGAGGACACTCCTGATCAGAAAAAGACAAAGACCTCATTCTTCAACTGGTGGTATTTAGCGATAGTACTTGCAGGCACTAGTTCAACACTTGTGGTGATCTACATTCAGGTTATATGGCTTCATTCTCGATACATGGATCTGCGTCTATGTCTTTTATTCGTCATTGTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

278

Amino Acids

31.42

Weight (kDa)

9.49

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 160 - 256 2.4e-19 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 281, 446
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 2 cut(s) 20, 645
AclWI GGATC 2 cut(s) 194, 804
AcoI YGGCCR 1 cut(s) 57
AfaI GTAC 2 cut(s) 365, 726
AfiI CCNNNNNNNGG 3 cut(s) 66, 251, 443
AgsI TTSAA 3 cut(s) 481, 703, 744
AhlI ACTAGT 1 cut(s) 737
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 2 cut(s) 194, 804
AoxI GGCC 2 cut(s) 57, 83
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 766
BaeGI GKGCMC 1 cut(s) 621
BanI GGYRCC 2 cut(s) 281, 446
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 161
BccI CCATC 3 cut(s) 254, 494, 634
BceAI ACGGC 2 cut(s) 269, 317
BciT130I CCWGG 1 cut(s) 87
BclI TGATCA 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 547
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 2 cut(s) 113, 738
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 2 cut(s) 150, 645
BlsI GCNGC 2 cut(s) 151, 646
BmcAI AGTACT 1 cut(s) 726
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 283, 448
BmrFI CCNGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 547
BsaJI CCNNGG 3 cut(s) 245, 285, 469
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 251, 443
Bse1I ACTGG 3 cut(s) 348, 710, 829
Bse8I GATNNNNATC 1 cut(s) 185
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 245, 285, 469
BseGI GGATG 3 cut(s) 219, 265, 626
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 66, 251, 443
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 3 cut(s) 348, 710, 829
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 59, 85
BshNI GGYRCC 2 cut(s) 281, 446
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 66, 251, 443
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 59, 85
Bso31I GGTCTC 1 cut(s) 547
Bsp1286I GDGCHC 2 cut(s) 144, 621
Bsp143I GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 20, 645
BspANI GGCC 2 cut(s) 59, 85
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 283, 448
BspPI GGATC 2 cut(s) 194, 804
BspT107I GGYRCC 2 cut(s) 281, 446
BspTNI GGTCTC 1 cut(s) 547
BsrI ACTGG 3 cut(s) 348, 710, 829
BssECI CCNNGG 3 cut(s) 245, 285, 469
BssMI GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
BssT1I CCWWGG 2 cut(s) 245, 469
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 83, 733
BstDEI CTNAG 1 cut(s) 173
BstDSI CCRYGG 2 cut(s) 245, 285
BstF5I GGATG 3 cut(s) 219, 265, 626
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 7 cut(s) 183, 189, 203, 652, 676, 759, 799
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BsuRI GGCC 2 cut(s) 59, 85
BtgI CCRYGG 2 cut(s) 245, 285
BtsCI GGATG 3 cut(s) 219, 265, 626
BtsI GCAGTG 2 cut(s) 21, 324
BtsIMutI CAGTG 2 cut(s) 21, 324
Cac8I GCNNGC 2 cut(s) 83, 733
CfoI GCGC 1 cut(s) 112
CseI GACGC 1 cut(s) 791
Csp6I GTAC 2 cut(s) 364, 725
CspCI CAANNNNNGTGG 2 cut(s) 732, 767
CviAII CATG 7 cut(s) 145, 246, 292, 397, 411, 514, 793
CviQI GTAC 2 cut(s) 364, 725
DdeI CTNAG 1 cut(s) 173
DpnI GATC 7 cut(s) 182, 188, 202, 651, 675, 758, 798
DpnII GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 245, 469
Eco31I GGTCTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 245, 469
ErhI CCWWGG 2 cut(s) 245, 469
FaeI CATG 7 cut(s) 148, 249, 295, 400, 414, 517, 796
FaqI GGGAC 1 cut(s) 59
FatI CATG 7 cut(s) 144, 245, 291, 396, 410, 513, 792
FauI CCCGC 1 cut(s) 13
FbaI TGATCA 1 cut(s) 673
Fnu4HI GCNGC 2 cut(s) 150, 645
FokI GGATG 3 cut(s) 226, 272, 613
Fsp4HI GCNGC 2 cut(s) 150, 645
FspBI CTAG 2 cut(s) 113, 738
GlaI GCGC 1 cut(s) 111
GluI GCNGC 2 cut(s) 150, 645
GsaI CCCAGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 59, 85
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 791
HhaI GCGC 1 cut(s) 112
Hin1II CATG 7 cut(s) 148, 249, 295, 400, 414, 517, 796
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 180, 200, 678
Hpy188III TCNNGA 6 cut(s) 159, 184, 481, 566, 671, 786
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 3 cut(s) 31, 511, 605
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 14, 228, 332, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 7 cut(s) 148, 249, 295, 400, 414, 517, 796
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 673
Kzo9I GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 2 cut(s) 113, 738
MaeII ACGT 1 cut(s) 402
MalI GATC 7 cut(s) 182, 188, 202, 651, 675, 758, 798
MboI GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
MboII GAAGA 4 cut(s) 55, 431, 571, 691
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 2 cut(s) 144, 621
MluCI AATT 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 98
MslI CAYNNNNRTG 4 cut(s) 244, 395, 518, 564
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 455
NcoI CCATGG 1 cut(s) 245
NdeII GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
NlaIII CATG 7 cut(s) 148, 249, 295, 400, 414, 517, 796
NlaIV GGNNCC 2 cut(s) 283, 448
PflMI CCANNNNNTGG 1 cut(s) 251
PkrI GCNGC 2 cut(s) 151, 646
Psp6I CCWGG 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 2 cut(s) 283, 448
PsuI RGATCY 1 cut(s) 796
RsaI GTAC 2 cut(s) 365, 726
RsaNI GTAC 2 cut(s) 364, 725
RseI CAYNNNNRTG 4 cut(s) 244, 395, 518, 564
SatI GCNGC 2 cut(s) 150, 645
Sau3AI GATC 7 cut(s) 180, 186, 200, 649, 673, 756, 796
ScaI AGTACT 1 cut(s) 726
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 2 cut(s) 144, 621
SmiMI CAYNNNNRTG 4 cut(s) 244, 395, 518, 564
SpeI ACTAGT 1 cut(s) 737
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 20, 645
SspMI CTAG 2 cut(s) 113, 738
StyD4I CCNGG 1 cut(s) 85
StyI CCWWGG 2 cut(s) 245, 469
TaiI ACGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 787
TaqII GACCGA 1 cut(s) 529
TasI AATT 1 cut(s) 373
TatI WGTACW 1 cut(s) 724
TauI GCSGC 1 cut(s) 647
TscAI CASTG 2 cut(s) 21, 324
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 230, 413, 493, 502, 770
TspGWI ACGGA 1 cut(s) 619
TspRI CASTG 2 cut(s) 21, 324
Van91I CCANNNNNTGG 1 cut(s) 251
XspI CTAG 2 cut(s) 113, 738
ZrmI AGTACT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.