Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Forward (+)

22529650 .. 22530498

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGATCATTGACGACCTCAATGCTTCAAGCACGACCAGAAATCCATGGAGATTATGCTCTCAAACTCAAGTTGAACGAGTAAAGCTCATCCTACGCCTCATTCCGGTATGGACATGTTGCTTGATGTTTGGTTTAGTCCAATCCTTTGTTCAGACCACCTTCACCAAGCAAGGAAGCACAATGGTCCGCTCAATTGGTTCAAACTTCAAGCTTCCGCAAGCATCACTTCAAATCTTTGTTTTTCTAACGGTTATAGTTGTGATTCCAATATATGACCGTGTTTTTGTCCCAACAGCCTCTGGCATTACTATCCTACAACGAATCGGCATTGGCCTATTTCTATCCATAATCACCATGGTCGTGTCAGGTTTGGTAGAAGCGAAAAGAGTTAGCGTTGTAAAAGATCACAACCTCTTGGACAACCCGAAAGCGGTAGTGCCAATGAGAGTGTGGTGGTTAATTCCACAGTACATGGTATGCGGTTTATCTGATGTATTTGCATTGGTTGGAATCCAAGAATTCTTTTACGATCAAATGCCGGAGGAAATGAGAAGCATGGGAGTAGCAGCATACCTTAACGTTAATGGTGTCGGAAGCTTCATAAGCAGCGGTATAATAACCGTGGTGCAAGCGATTAGCTCAAAGCATGGTGAAAAATGGCTTAGTGACAACATCAATCGTGCCCACCTCGATTACTTTTATTGGGTAATTGCAGCTTTGAGCACTTTGAGCTTGTGCGTTTATCTGTGGATTGCTAAACGTTTTGTATACAAAATGTTTGCAGCAGAAGTAACCAACGAGGAGAAAGAACGGACTTTAATCCGGATGATCGAGAACACAAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

283

Amino Acids

31.89

Weight (kDa)

8.96

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	4 - 215	1.5e-43	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	768
AccIII	TCCGGA	1 cut(s)	822
AciI	CCGC	5 cut(s)	187, 215, 431, 480, 609
AclI	AACGTT	2 cut(s)	579, 760
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	103, 430
AflIII	ACRYGT	1 cut(s)	113
AgsI	TTSAA	5 cut(s)	27, 74, 201, 208, 230
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	7 cut(s)	85, 211, 597, 639, 716, 732, 843
AluI	AGCT	7 cut(s)	85, 211, 597, 639, 716, 732, 843
Alw21I	GWGCWC	1 cut(s)	725
AlwNI	CAGNNNCTG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	822
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	566, 606, 713, 782
ApoI	RAATTY	1 cut(s)	518
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	154, 343, 662
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	725
BbvI	GCAGC	4 cut(s)	578, 618, 725, 794
BcgI	CGANNNNNNTGC	1 cut(s)	36
BclI	TGATCA	1 cut(s)	3
BisI	GCNGC	4 cut(s)	567, 607, 714, 783
BlsI	GCNGC	4 cut(s)	568, 608, 715, 784
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmsI	GCATC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	69, 101
BpuEI	CTTGAG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	44, 354, 621
BsaWI	WCCGGW	2 cut(s)	103, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 430
BseAI	TCCGGA	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	44, 354, 621
BseGI	GGATG	2 cut(s)	87, 831
BseLI	CCNNNNNNNGG	2 cut(s)	103, 430
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	4 cut(s)	578, 618, 725, 794
BshFI	GGCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	725
BsiSI	CCGG	3 cut(s)	104, 539, 823
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	103, 430
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	685, 725
Bsp13I	TCCGGA	1 cut(s)	822
Bsp143I	GATC	4 cut(s)	3, 403, 529, 828
Bsp19I	CCATGG	2 cut(s)	44, 354
BspACI	CCGC	5 cut(s)	187, 215, 431, 480, 609
BspANI	GGCC	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	822
BsrBI	CCGCTC	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	44, 354, 621
BssMI	GATC	4 cut(s)	3, 403, 529, 828
BssNAI	GTATAC	1 cut(s)	769
BssT1I	CCWWGG	2 cut(s)	44, 354
Bst1107I	GTATAC	1 cut(s)	769
Bst4CI	ACNGT	4 cut(s)	250, 278, 468, 622
BstC8I	GCNNGC	2 cut(s)	219, 630
BstDEI	CTNAG	1 cut(s)	662
BstDSI	CCRYGG	3 cut(s)	44, 354, 621
BstF5I	GGATG	2 cut(s)	87, 831
BstKTI	GATC	4 cut(s)	6, 406, 532, 831
BstMBI	GATC	4 cut(s)	3, 403, 529, 828
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 729
BstNSI	RCATGY	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	578, 618, 725, 794
BstZ17I	GTATAC	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	3 cut(s)	44, 354, 621
BtsCI	GGATG	2 cut(s)	87, 831
Cac8I	GCNNGC	2 cut(s)	219, 630
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	6 cut(s)	45, 114, 355, 472, 556, 647
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	4 cut(s)	5, 405, 531, 830
DpnII	GATC	4 cut(s)	3, 403, 529, 828
Eco130I	CCWWGG	2 cut(s)	44, 354
Eco47I	GGWCC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	44, 354
ErhI	CCWWGG	2 cut(s)	44, 354
FaeI	CATG	6 cut(s)	48, 117, 358, 475, 559, 650
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	6 cut(s)	44, 113, 354, 471, 555, 646
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	4 cut(s)	567, 607, 714, 783
FokI	GGATG	2 cut(s)	74, 838
Fsp4HI	GCNGC	4 cut(s)	567, 607, 714, 783
GluI	GCNGC	4 cut(s)	567, 607, 714, 783
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	3 cut(s)	104, 539, 823
Hin1II	CATG	6 cut(s)	48, 117, 358, 475, 559, 650
HindIII	AAGCTT	3 cut(s)	209, 595, 841
HinfI	GANTC	3 cut(s)	262, 321, 510
HpaII	CCGG	3 cut(s)	104, 539, 823
HphI	GGTGA	3 cut(s)	154, 343, 662
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	153, 490, 593
Hpy188III	TCNNGA	2 cut(s)	823, 832
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	4 cut(s)	250, 278, 468, 622
HpyCH4IV	ACGT	2 cut(s)	579, 760
HpyCH4V	TGCA	4 cut(s)	500, 628, 713, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 729
HpyF3I	CTNAG	1 cut(s)	662
HpySE526I	ACGT	2 cut(s)	579, 760
Hsp92II	CATG	6 cut(s)	48, 117, 358, 475, 559, 650
Kpn2I	TCCGGA	1 cut(s)	822
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 403, 529, 828
LpnPI	CCDG	6 cut(s)	49, 117, 285, 351, 552, 836
Lsp1109I	GCAGC	4 cut(s)	578, 618, 725, 794
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	579, 760
MaeIII	GTNAC	2 cut(s)	665, 790
MalI	GATC	4 cut(s)	5, 405, 531, 830
MbiI	CCGCTC	1 cut(s)	189
MboI	GATC	4 cut(s)	3, 403, 529, 828
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	685, 725
MluCI	AATT	4 cut(s)	192, 459, 518, 708
MmeI	TCCRAC	2 cut(s)	487, 571
MnlI	CCTC	7 cut(s)	26, 107, 307, 422, 535, 698, 793
MroI	TCCGGA	1 cut(s)	822
MseI	TTAA	4 cut(s)	458, 576, 582, 818
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	609
MspI	CCGG	3 cut(s)	104, 539, 823
MunI	CAATTG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	603, 729
NcoI	CCATGG	2 cut(s)	44, 354
NdeII	GATC	4 cut(s)	3, 403, 529, 828
NlaIII	CATG	6 cut(s)	48, 117, 358, 475, 559, 650
NmuCI	GTSAC	1 cut(s)	665
NspI	RCATGY	1 cut(s)	117
PciI	ACATGT	1 cut(s)	113
PfeI	GAWTC	3 cut(s)	262, 321, 510
PkrI	GCNGC	4 cut(s)	568, 608, 715, 784
PscI	ACATGT	1 cut(s)	113
Psp1406I	AACGTT	2 cut(s)	579, 760
PspPI	GGNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	4 cut(s)	458, 576, 582, 818
SatI	GCNGC	4 cut(s)	567, 607, 714, 783
Sau3AI	GATC	4 cut(s)	3, 403, 529, 828
Sau96I	GGNCC	1 cut(s)	184
SduI	GDGCHC	2 cut(s)	685, 725
SfaNI	GCATC	1 cut(s)	230
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	4 cut(s)	192, 459, 518, 708
SsiI	CCGC	5 cut(s)	187, 215, 431, 480, 609
StyI	CCWWGG	2 cut(s)	44, 354
TaaI	ACNGT	4 cut(s)	250, 278, 468, 622
TaiI	ACGT	2 cut(s)	582, 763
TaqI	TCGA	2 cut(s)	690, 831
TasI	AATT	4 cut(s)	192, 459, 518, 708
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	3 cut(s)	262, 321, 510
Tru1I	TTAA	4 cut(s)	458, 576, 582, 818
Tru9I	TTAA	4 cut(s)	458, 576, 582, 818
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	4 cut(s)	566, 606, 713, 782
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	1 cut(s)	589
TspGWI	ACGGA	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	2 cut(s)	352, 447
XmiI	GTMKAC	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.