Prupe.2G034800_v2.0.a1

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000830
Physical Location & Seq
Reverse (-)
3745135 .. 3746007
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G034800.1

Sequence Viewer

Length: 765 bp
ATGATCATAGACGAAGTAGATACATCAAACCAAAACAGAAATCCATGGTGGTTATGCTCTCTCAATCAAGTGGAAGAAGTGAAGCTTGTCCTCCGACTCATTCCCATATGGTTAAGTTGCCTAATGTTTGGTGTAATCCAAGCCCAACTTCACACCTTCTTCACAAACAAAGTAGCACAACAATCCGATCAATCGGTCCCCATTTCCAAGTCCCTCCAGCATCACTTCAAGGACTTAATCGGGATCGGCCTAGTTATATCAATACTCAATATGGTTGTGTCAGCCCAAGTAGAGGCCAAAAGGCTCAACGTTGCAAAACATTATAATCTCATTGACAAGCCTAAAGCAATAATACCAATGAAGGTATGGTGGTTACTCCCACAATACCTAATTTGCGGTGTCTCCGACGCGTTCACAACCGTGGGACTTCAAGAACTGTTTTATGATCAAATGCCAGAGCAGATGAGAAGCATGGGGGCAGCGGCTTTTATTAGTGTTATCGGCGTTGGCAGCTTCATAAGCTCTGGTATTATAAGTATTGTGCAGTCCATTACCTCAAGAAATGGTGAGAAATGGCTTGGGGACAATATTAATCGGGCTCACCTTGATTACTTCTATTGGGTGCTAGCAGTTTTGAGCACACTGAGTTTGTGTGTTTATGTGTTAATTACAAGGGCTTTTGTGTACCGAAAGATTGGAGGAGAAGAGAAACTAAAGGCAGAGATGAGCTTATTTGCAAAGAACCATGATGGAGGAGAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

255

Amino Acids

28.65

Weight (kDa)

7.69

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 324, 533
AccII CGCG 1 cut(s) 410
AciI CCGC 2 cut(s) 396, 482
AclI AACGTT 1 cut(s) 309
AclWI GGATC 1 cut(s) 251
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 1 cut(s) 292
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 229, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AleI CACNNNNGTG 1 cut(s) 419
AluBI AGCT 4 cut(s) 85, 513, 522, 729
AluI AGCT 4 cut(s) 85, 513, 522, 729
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 406, 752
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 247, 294
ApeKI GCWGC 2 cut(s) 479, 510
AseI ATTAAT 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 578, 593
AsuNHI GCTAGC 1 cut(s) 625
AvaII GGWCC 1 cut(s) 196
BanII GRGCYC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 491, 522
BccI CCATC 1 cut(s) 743
BclI TGATCA 2 cut(s) 3, 445
BcoDI GTCTC 2 cut(s) 406, 752
BfaI CTAG 2 cut(s) 251, 626
BisI GCNGC 3 cut(s) 480, 483, 511
BlsI GCNGC 3 cut(s) 481, 484, 512
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 1 cut(s) 629
BpmI CTGGAG 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 541
BsaJI CCNNGG 2 cut(s) 44, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 44, 420
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 635
BseRI GAGGAG 1 cut(s) 714
BseXI GCAGC 2 cut(s) 491, 522
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 2 cut(s) 249, 296
BsiHKAI GWGCWC 1 cut(s) 641
BslFI GGGAC 4 cut(s) 182, 196, 438, 596
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 406, 752
BsmFI GGGAC 4 cut(s) 182, 196, 438, 596
BsnI GGCC 2 cut(s) 249, 296
Bsp1286I GDGCHC 2 cut(s) 601, 641
Bsp143I GATC 4 cut(s) 3, 187, 243, 445
Bsp19I CCATGG 1 cut(s) 44
BspACI CCGC 2 cut(s) 396, 482
BspANI GGCC 2 cut(s) 249, 296
BspCNI CTCAG 1 cut(s) 636
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 1 cut(s) 198
BspOI GCTAGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 44, 420
BssMI GATC 4 cut(s) 3, 187, 243, 445
BssT1I CCWWGG 1 cut(s) 44
Bst4CI ACNGT 2 cut(s) 421, 438
Bst6I CTCTTC 1 cut(s) 699
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 1 cut(s) 644
BstDSI CCRYGG 2 cut(s) 44, 420
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 4 cut(s) 6, 190, 246, 448
BstMAI GTCTC 2 cut(s) 406, 752
BstMBI GATC 4 cut(s) 3, 187, 243, 445
BstMWI GCNNNNNNNGC 2 cut(s) 510, 519
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 491, 522
BsuRI GGCC 2 cut(s) 249, 296
BtgI CCRYGG 2 cut(s) 44, 420
BtsIMutI CAGTG 1 cut(s) 641
Cac8I GCNNGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 196
CseI GACGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 685
CviAII CATG 4 cut(s) 45, 472, 746, 762
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 1 cut(s) 644
DpnI GATC 4 cut(s) 5, 189, 245, 447
DpnII GATC 4 cut(s) 3, 187, 243, 445
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
Eco130I CCWWGG 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 4 cut(s) 48, 475, 749, 765
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 132, 164
FaqI GGGAC 4 cut(s) 182, 196, 438, 596
FatI CATG 4 cut(s) 44, 471, 745, 761
FauNDI CATATG 1 cut(s) 107
FbaI TGATCA 2 cut(s) 3, 445
Fnu4HI GCNGC 3 cut(s) 480, 483, 511
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 480, 483, 511
FspBI CTAG 2 cut(s) 251, 626
GluI GCNGC 3 cut(s) 480, 483, 511
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 2 cut(s) 249, 296
HgaI GACGC 1 cut(s) 416
Hin1II CATG 4 cut(s) 48, 475, 749, 765
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 96
HphI GGTGA 2 cut(s) 578, 593
Hpy166II GTNNAC 2 cut(s) 414, 685
Hpy188I TCNGA 3 cut(s) 95, 187, 406
Hpy188III TCNNGA 3 cut(s) 241, 431, 558
Hpy8I GTNNAC 2 cut(s) 414, 685
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 166, 355
HpyCH4III ACNGT 2 cut(s) 421, 438
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 3 cut(s) 314, 544, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 510, 519
HpyF3I CTNAG 1 cut(s) 644
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 4 cut(s) 48, 475, 749, 765
Ksp22I TGATCA 2 cut(s) 3, 445
Kzo9I GATC 4 cut(s) 3, 187, 243, 445
LpnPI CCDG 3 cut(s) 230, 468, 510
Lsp1109I GCAGC 2 cut(s) 491, 522
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 251, 626
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 372
MalI GATC 4 cut(s) 5, 189, 245, 447
MboI GATC 4 cut(s) 3, 187, 243, 445
MboII GAAGA 3 cut(s) 86, 151, 716
MhlI GDGCHC 2 cut(s) 601, 641
MluCI AATT 2 cut(s) 390, 666
MluI ACGCGT 1 cut(s) 408
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 118, 429
MnlI CCTC 6 cut(s) 101, 224, 286, 565, 692, 746
MseI TTAA 4 cut(s) 113, 236, 591, 665
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 482
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 510, 519
NcoI CCATGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 107
NdeII GATC 4 cut(s) 3, 187, 243, 445
NheI GCTAGC 1 cut(s) 625
NlaIII CATG 4 cut(s) 48, 475, 749, 765
NlaIV GGNNCC 1 cut(s) 198
OliI CACNNNNGTG 1 cut(s) 419
PkrI GCNGC 3 cut(s) 481, 484, 512
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 591
PsiI TTATAA 2 cut(s) 324, 533
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 4 cut(s) 113, 236, 591, 665
SatI GCNGC 3 cut(s) 480, 483, 511
Sau3AI GATC 4 cut(s) 3, 187, 243, 445
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 90
SduI GDGCHC 2 cut(s) 601, 641
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 2 cut(s) 390, 666
SsiI CCGC 2 cut(s) 396, 482
SspI AATATT 1 cut(s) 589
SspMI CTAG 2 cut(s) 251, 626
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 2 cut(s) 421, 438
TaiI ACGT 1 cut(s) 312
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 390, 666
TauI GCSGC 1 cut(s) 485
Tru1I TTAA 4 cut(s) 113, 236, 591, 665
Tru9I TTAA 4 cut(s) 113, 236, 591, 665
TscAI CASTG 1 cut(s) 648
TseI GCWGC 2 cut(s) 479, 510
TspDTI ATGAA 2 cut(s) 374, 505
TspRI CASTG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 196
VspI ATTAAT 1 cut(s) 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XspI CTAG 2 cut(s) 251, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.