Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001099.1

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Reverse (-)

52442 .. 53473

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001099.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgatcgaaaacgagcaggagttatacaccaagctctccaccctccaaaaaccctctcgaggtggctgggatgctgctattttcatcatctttgttgaggcagcagagaggtttgcgtattatggcttatctggtaacctcatcatatacctcacaaattatcttcaccagcccacggccatcgcagccaagaacgtcaacatatggatcggtgtgtcgtccctctttgctcttcttggcgccattgtagccgattctttcctgggtcggttcaagaccatcattctatccacctccatttatttgatgaagatgtctgcctcgatgaatgctcttggacaagctgtggctgcagggattgaaagtgtcaatccaggtgattactcctaccgggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

132

Amino Acids

14.47

Weight (kDa)

5.75

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	215
AcoI	YGGCCR	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	59, 175
AgsI	TTSAA	2 cut(s)	274, 362
AjnI	CCWGG	2 cut(s)	261, 373
AluBI	AGCT	2 cut(s)	34, 344
AluI	AGCT	2 cut(s)	34, 344
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	74, 101, 185, 350
AspLEI	GCGC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	158, 389
AvaI	CYCGRG	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	239
BbvI	GCAGC	4 cut(s)	61, 113, 197, 337
BccI	CCATC	2 cut(s)	188, 287
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	263, 375
BcnI	CCSGG	1 cut(s)	392
BfaI	CTAG	1 cut(s)	397
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	243
BisI	GCNGC	4 cut(s)	75, 102, 186, 351
BlsI	GCNGC	4 cut(s)	76, 103, 187, 352
Bme1390I	CCNGG	3 cut(s)	263, 375, 392
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	3 cut(s)	263, 375, 392
BmsI	GCATC	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	174, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 175
BseBI	CCWGG	2 cut(s)	263, 375
BseDI	CCNNGG	2 cut(s)	174, 262
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	59, 175
BseXI	GCAGC	4 cut(s)	61, 113, 197, 337
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	59, 175
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	3, 207
BspANI	GGCC	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	215
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	174, 262
BssMI	GATC	2 cut(s)	3, 207
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	263, 375
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	6, 210
BstMBI	GATC	2 cut(s)	3, 207
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 248, 350
BstNI	CCWGG	2 cut(s)	263, 375
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	3 cut(s)	261, 373, 390
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	61, 113, 197, 337
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	242
CviJI	RGCY	9 cut(s)	34, 66, 126, 172, 179, 188, 251, 344, 350
CviKI_1	RGCY	9 cut(s)	34, 66, 126, 172, 179, 188, 251, 344, 350
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	2 cut(s)	5, 209
DpnII	GATC	2 cut(s)	3, 207
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	134
EcoO65I	GGTNACC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	261, 373
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
FaiI	YATR	6 cut(s)	25, 123, 146, 148, 203, 205
FaqI	GGGAC	1 cut(s)	205
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	4 cut(s)	75, 102, 186, 351
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	75, 102, 186, 351
FspBI	CTAG	1 cut(s)	397
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	4 cut(s)	75, 102, 186, 351
GsaI	CCCAGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	2 cut(s)	158, 389
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	57, 274
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 248, 350
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	240
HspAI	GCGC	1 cut(s)	240
KasI	GGCGCC	1 cut(s)	239
Kzo9I	GATC	2 cut(s)	3, 207
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	2, 52, 117, 182, 248, 275, 339, 360, 387
Lsp1109I	GCAGC	4 cut(s)	61, 113, 197, 337
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	397
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	5, 209
MboI	GATC	2 cut(s)	3, 207
MboII	GAAGA	3 cut(s)	155, 224, 322
MluCI	AATT	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	240
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	3 cut(s)	263, 375, 392
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	263, 375
MwoI	GCNNNNNNNGC	3 cut(s)	185, 248, 350
NarI	GGCGCC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	2 cut(s)	3, 207
NlaIV	GGNNCC	1 cut(s)	241
PaeR7I	CTCGAG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	76, 103, 187, 352
PluTI	GGCGCC	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	261, 373
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	2 cut(s)	261, 373
PspN4I	GGNNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	355
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	4 cut(s)	75, 102, 186, 351
Sau3AI	GATC	2 cut(s)	3, 207
ScrFI	CCNGG	3 cut(s)	263, 375, 392
SetI	ASST	9 cut(s)	36, 64, 113, 141, 153, 198, 296, 346, 379
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	351
SfoI	GGCGCC	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	157
SspDI	GGCGCC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	397
StyD4I	CCNGG	3 cut(s)	261, 373, 390
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	6, 58, 323
TasI	AATT	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	254
TseI	GCWGC	4 cut(s)	74, 101, 185, 350
TspDTI	ATGAA	3 cut(s)	73, 323, 341
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.