Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Reverse (-)

6921469 .. 6922899

Gene Structure 1431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG050300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGACAGGTTCCATGGTGGTGGCACTAATTTTATTTCTGTTGGGAATCAAGAAATACCGAAAGCAAGGACCCCTAGGCAGTCCCTTCCCCAAGGTGGCTCAGGTCTTTGTCGCAGCCGTCAGGAAGCGGCACACCGAGGTCACTACCGGTGACAGTTCGGGTGTGTACTTCAGAGATGACACAAGTCCGCAACAGCCACTTTCTTCCGTACATACCAACCAATTCAGATTTTTGGACAAGGCAATGGTCATTGACCACTTGGATGCTTCAAGCGAGACCAGAAATCCTTGGAGACTATGTTCACTAAATCAAGTGGAACAAGTAAAGCTCCTCCTACGCCTCATTCCCATATGGATGTGCTGCTTAATGTTTGCTGTAGTCCAGTCATTTGTGCAGACCTTCTTCACCAAACAAGGAAGCACAATGATCCGGTCAATAGGTTCATTTCAGATTCCCCAAGCTTCCCTCCTAATCTTCGTTGGTCTCACCATCATAGTTGTCATTCCAATCTACGACCGTGTTTTTGTCCCAACTGCCCGAAAATTCACCGGACATCCCTCAGGTATTACCATGCTACAAAGAATTGGCACTGGCCTATTAATATCAATAATCACTATGGTTGTTGCAGCTGTGGTAGAAGCCAAAAGGGTAAAGATTTTAGGAGATCACAACCTCCTGGACAATCCGAAAGCAATTGTTCCAATGAGAGTGTGGTGGTTAGTTCCTCAGTATGTGATATCTGGTTTGTCTGATGTATTTGCGTTTGTTGGAATCCAAGAGTTGTTCTATGATCAAATGCCGGAGGCAATGAGAAGCTTGGGAGCAGCATTTTACCTCAGCGTCACCGGAGTTGGAAACTTCATAAGCAGTGGGATAATAACGTTGGTTCAAGTAATTAGCTCCAAGTATGGTGAAAAATGGATTAGTGACAATATCAATCGCGCACACCTCGATTACTTTTACTGGGTAATTGCAGCTCTGAGCACATTGAATTTGTGCATTTACGTGTGGATTGCTAAAGGATTTCTATACAAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

347

Amino Acids

38.87

Weight (kDa)

9.65

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	4 - 303	1.2e-59	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	942
AciI	CCGC	2 cut(s)	127, 188
AclI	AACGTT	1 cut(s)	881
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	542, 991
AcuI	CTGAAG	1 cut(s)	154
AfaI	GTAC	2 cut(s)	167, 210
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	1005
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	270, 890, 991
AjnI	CCWGG	1 cut(s)	675
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	6 cut(s)	328, 461, 629, 816, 900, 977
AluI	AGCT	6 cut(s)	328, 461, 629, 816, 900, 977
Alw21I	GWGCWC	1 cut(s)	986
Alw26I	GTCTC	3 cut(s)	269, 286, 488
AlwI	GGATC	1 cut(s)	421
AoxI	GGCC	1 cut(s)	592
ApeKI	GCWGC	5 cut(s)	113, 360, 626, 824, 974
ApoI	RAATTY	2 cut(s)	542, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
AseI	ATTAAT	1 cut(s)	599
AsiGI	ACCGGT	1 cut(s)	146
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	944
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	6 cut(s)	161, 397, 478, 538, 835, 923
AvaII	GGWCC	1 cut(s)	68
AvrII	CCTAGG	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	986
BbvCI	CCTCAGC	1 cut(s)	836
BbvI	GCAGC	5 cut(s)	125, 347, 638, 836, 986
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	1 cut(s)	790
BcoDI	GTCTC	3 cut(s)	269, 286, 488
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	6 cut(s)	114, 128, 361, 627, 825, 975
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	6 cut(s)	115, 129, 362, 628, 826, 976
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	2 cut(s)	10, 70
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	973
BoxI	GACNNNNGTC	1 cut(s)	183
Bpu10I	CCTNAGC	2 cut(s)	99, 836
BsaAI	YACGTR	1 cut(s)	1006
BsaI	GGTCTC	2 cut(s)	269, 488
BsaJI	CCNNGG	5 cut(s)	12, 73, 90, 135, 287
BsaWI	WCCGGW	4 cut(s)	146, 429, 548, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	382, 595, 968
Bse21I	CCTNAGG	1 cut(s)	559
Bse3DI	GCAATG	2 cut(s)	249, 813
BseBI	CCWGG	1 cut(s)	677
BseDI	CCNNGG	5 cut(s)	12, 73, 90, 135, 287
BseGI	GGATG	3 cut(s)	268, 360, 553
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	2 cut(s)	249, 813
BseMII	CTCAG	5 cut(s)	113, 573, 740, 850, 971
BseNI	ACTGG	3 cut(s)	382, 595, 968
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	5 cut(s)	125, 347, 638, 836, 986
BsgI	GTGCAG	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	942
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	1 cut(s)	594
BshTI	ACCGGT	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	986
BsiSI	CCGG	5 cut(s)	147, 430, 549, 800, 846
BslFI	GGGAC	2 cut(s)	66, 512
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	3 cut(s)	269, 286, 488
BsmFI	GGGAC	2 cut(s)	66, 512
BsnI	GGCC	1 cut(s)	594
Bso31I	GGTCTC	2 cut(s)	269, 488
Bsp1286I	GDGCHC	1 cut(s)	986
Bsp143I	GATC	3 cut(s)	426, 664, 790
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	127, 188
BspANI	GGCC	1 cut(s)	594
BspCNI	CTCAG	5 cut(s)	112, 572, 739, 849, 972
BspFNI	CGCG	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	10, 70
BspPI	GGATC	1 cut(s)	421
BspTNI	GGTCTC	2 cut(s)	269, 488
BsrDI	GCAATG	2 cut(s)	249, 813
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	382, 595, 968
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	5 cut(s)	12, 73, 90, 135, 287
BssMI	GATC	3 cut(s)	426, 664, 790
BssT1I	CCWWGG	4 cut(s)	12, 73, 90, 287
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	2 cut(s)	155, 518
BstBAI	YACGTR	1 cut(s)	1006
BstDEI	CTNAG	5 cut(s)	99, 559, 726, 836, 980
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	268, 360, 553
BstFNI	CGCG	1 cut(s)	942
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	3 cut(s)	429, 667, 793
BstMAI	GTCTC	3 cut(s)	269, 286, 488
BstMBI	GATC	3 cut(s)	426, 664, 790
BstMCI	CGRYCG	1 cut(s)	517
BstNI	CCWGG	1 cut(s)	677
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	942
BstV1I	GCAGC	5 cut(s)	125, 347, 638, 836, 986
BstXI	CCANNNNNNTGG	1 cut(s)	19
Bsu36I	CCTNAGG	1 cut(s)	559
BsuRI	GGCC	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	268, 360, 553
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	2 cut(s)	588, 874
CfoI	GCGC	1 cut(s)	944
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	2 cut(s)	166, 209
CspAI	ACCGGT	1 cut(s)	146
CviAII	CATG	2 cut(s)	13, 571
CviQI	GTAC	2 cut(s)	166, 209
DdeI	CTNAG	5 cut(s)	99, 559, 726, 836, 980
DpnI	GATC	3 cut(s)	428, 666, 792
DpnII	GATC	3 cut(s)	426, 664, 790
Eco130I	CCWWGG	4 cut(s)	12, 73, 90, 287
Eco31I	GGTCTC	2 cut(s)	269, 488
Eco32I	GATATC	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	675
EcoRV	GATATC	1 cut(s)	738
EcoT14I	CCWWGG	4 cut(s)	12, 73, 90, 287
ErhI	CCWWGG	4 cut(s)	12, 73, 90, 287
FaeI	CATG	2 cut(s)	16, 574
FaqI	GGGAC	2 cut(s)	66, 512
FatI	CATG	2 cut(s)	12, 570
FauNDI	CATATG	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	6 cut(s)	114, 128, 361, 627, 825, 975
FokI	GGATG	3 cut(s)	275, 367, 540
Fsp4HI	GCNGC	6 cut(s)	114, 128, 361, 627, 825, 975
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	943
GluI	GCNGC	6 cut(s)	114, 128, 361, 627, 825, 975
HaeIII	GGCC	1 cut(s)	594
HapII	CCGG	5 cut(s)	147, 430, 549, 800, 846
HgaI	GACGC	1 cut(s)	829
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	2 cut(s)	16, 574
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HindIII	AAGCTT	2 cut(s)	459, 814
HinfI	GANTC	3 cut(s)	45, 451, 771
HpaII	CCGG	5 cut(s)	147, 430, 549, 800, 846
HphI	GGTGA	6 cut(s)	161, 397, 478, 538, 835, 923
Hpy166II	GTNNAC	2 cut(s)	166, 302
Hpy188I	TCNGA	6 cut(s)	173, 227, 450, 687, 751, 981
Hpy188III	TCNNGA	2 cut(s)	49, 121
Hpy8I	GTNNAC	2 cut(s)	166, 302
HpyAV	CCTTC	2 cut(s)	94, 409
HpyCH4III	ACNGT	2 cut(s)	155, 518
HpyCH4IV	ACGT	2 cut(s)	881, 1005
HpyCH4V	TGCA	4 cut(s)	394, 626, 974, 999
HpyF3I	CTNAG	5 cut(s)	99, 559, 726, 836, 980
HpySE526I	ACGT	2 cut(s)	881, 1005
Hsp92II	CATG	2 cut(s)	16, 574
HspAI	GCGC	1 cut(s)	942
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	3 cut(s)	426, 664, 790
LmnI	GCTCC	3 cut(s)	333, 821, 905
Lsp1109I	GCAGC	5 cut(s)	125, 347, 638, 836, 986
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	881, 1005
MaeIII	GTNAC	4 cut(s)	139, 149, 841, 926
MalI	GATC	3 cut(s)	428, 666, 792
MboI	GATC	3 cut(s)	426, 664, 790
MboII	GAAGA	3 cut(s)	195, 394, 466
MfeI	CAATTG	1 cut(s)	693
MhlI	GDGCHC	1 cut(s)	986
MluCI	AATT	8 cut(s)	27, 221, 542, 582, 693, 894, 969, 991
MmeI	TCCRAC	2 cut(s)	748, 832
MseI	TTAA	2 cut(s)	365, 599
MslI	CAYNNNNRTG	4 cut(s)	17, 261, 353, 1004
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	5 cut(s)	147, 430, 549, 800, 846
MspR9I	CCNGG	1 cut(s)	677
MunI	CAATTG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	942
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	3 cut(s)	426, 664, 790
NlaIII	CATG	2 cut(s)	16, 574
NlaIV	GGNNCC	2 cut(s)	10, 70
NmuCI	GTSAC	4 cut(s)	139, 149, 841, 926
PfeI	GAWTC	3 cut(s)	45, 451, 771
PfoI	TCCNGGA	1 cut(s)	675
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	115, 129, 362, 628, 826, 976
Ppu21I	YACGTR	1 cut(s)	1006
PpuMI	RGGWCCY	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	10, 70
PspPI	GGNCC	1 cut(s)	68
PspPPI	RGGWCCY	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	629
RsaI	GTAC	2 cut(s)	167, 210
RsaNI	GTAC	2 cut(s)	166, 209
RseI	CAYNNNNRTG	4 cut(s)	17, 261, 353, 1004
SaqAI	TTAA	2 cut(s)	365, 599
SatI	GCNGC	6 cut(s)	114, 128, 361, 627, 825, 975
Sau3AI	GATC	3 cut(s)	426, 664, 790
Sau96I	GGNCC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	1 cut(s)	986
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	4 cut(s)	17, 261, 353, 1004
Sse9I	AATT	8 cut(s)	27, 221, 542, 582, 693, 894, 969, 991
SsiI	CCGC	2 cut(s)	127, 188
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	4 cut(s)	12, 73, 90, 287
TaaI	ACNGT	2 cut(s)	155, 518
TaiI	ACGT	2 cut(s)	884, 1008
TaqI	TCGA	1 cut(s)	951
TasI	AATT	8 cut(s)	27, 221, 542, 582, 693, 894, 969, 991
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	130
TfiI	GAWTC	3 cut(s)	45, 451, 771
Tru1I	TTAA	2 cut(s)	365, 599
Tru9I	TTAA	2 cut(s)	365, 599
TscAI	CASTG	2 cut(s)	595, 874
TseFI	GTSAC	4 cut(s)	139, 149, 841, 926
TseI	GCWGC	5 cut(s)	113, 360, 626, 824, 974
Tsp45I	GTSAC	4 cut(s)	139, 149, 841, 926
TspDTI	ATGAA	2 cut(s)	432, 850
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	595, 874
VpaK11BI	GGWCC	1 cut(s)	68
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	2 cut(s)	542, 991
XcmI	CCANNNNNNNNNTGG	1 cut(s)	708
XmaJI	CCTAGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.