Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Reverse (-)

11634971 .. 11643516

Gene Structure 8546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG066100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATTGAAAATGGGCAGGAGTTATACACCAAGCTCTCCACCCTCCAAAAACCCTCTCGAGGTGGCTGGAATGCTGCTATTTTCATCATCTTTGTAGAGGCAGCAGAGAGGTTTGCGTATTATGGCTTATCTGGTAACCTCATCATATACCTCACAAATTATCTTCACCAGCCCACAGCCATCGCAGCCAAGAACGTCAACATATGGATCGGTGTGTCGTCCCTCTTTGCTCTTCTTGGCGCCATTGTAGCCGATTCTTTCCTGGGTCGGTTCAAGACCATCATTTTATCCACCTCCATTTATTTGATGGGAATGGTTTTACTATGCCTATCCGTCTCCAGTGTTCCTATTCATTATCGTGAAGCAGTGTTCTTTGTTGCGCTTTACATTTTGTCAGTCGGCGAAGGTGGGCACAAGCCTTGCGTCCAAACATTTGCTGCAGATCAGTTTGATGAGGACACCCCCGATCAGAAAAGGACACAGAGCTCATTCTTCAACTGGTGGTTCCTGGTGATAGTAATGGCAGGCACTAGTTCAACACTTGTGGTCATCTACATTCAGGATAATGTCGGCTGGGTGATAGGCTTTGGTATGTTGACTGTGGTACAGGCAGTGGGCCTGTTGCTATTTTTACTAGGAATCAAGAGATATAGGAAGGAAGGACCGCTTGGAAGCGCCTTTACCACCGTGGCGCAAGTTTTCATGGCGGCAGCAAGGAAGTGGCGTGTGGATGAGACGCTTCATTCTGATATTTTCTACGAGGATGAGAGGAGTGGATCTCATATGGGAGTTCAACCTAAGCAGAAAACTTTAGCTCGAACTAACCAATTCAGGTACATATCCGTTAAATTTGGGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

287

Amino Acids

32.11

Weight (kDa)

8.95

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	37 - 222	1.1e-07	Major Facilitator Superfamily
PTR2	PF00854	91 - 242	1.4e-36	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	2 cut(s)	665, 707
AclWI	GGATC	2 cut(s)	215, 784
AcsI	RAATTY	1 cut(s)	848
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	2 cut(s)	606, 836
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	8, 274, 496, 537, 794
AhlI	ACTAGT	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	261, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AluBI	AGCT	3 cut(s)	34, 486, 815
AluI	AGCT	3 cut(s)	34, 486, 815
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	2 cut(s)	340, 728
AlwI	GGATC	2 cut(s)	215, 784
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	616
ApeKI	GCWGC	5 cut(s)	74, 101, 185, 437, 710
ApoI	RAATTY	1 cut(s)	848
AspLEI	GCGC	4 cut(s)	242, 382, 677, 694
AspS9I	GGNCC	2 cut(s)	616, 662
AsuHPI	GGTGA	3 cut(s)	158, 523, 589
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	664, 696
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	5 cut(s)	61, 113, 197, 424, 722
BccI	CCATC	3 cut(s)	188, 287, 301
BciT130I	CCWGG	2 cut(s)	263, 509
BcoDI	GTCTC	2 cut(s)	340, 728
BcuI	ACTAGT	1 cut(s)	530
BfaI	CTAG	2 cut(s)	531, 635
BfmI	CTRYAG	1 cut(s)	438
BfoI	RGCGCY	2 cut(s)	243, 678
BisI	GCNGC	6 cut(s)	75, 102, 186, 438, 708, 711
BlsI	GCNGC	6 cut(s)	76, 103, 187, 439, 709, 712
Bme1390I	CCNGG	2 cut(s)	263, 509
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	2 cut(s)	616, 662
BmiI	GGNNCC	2 cut(s)	241, 506
BmrFI	CCNGG	2 cut(s)	263, 509
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	262, 687
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	2 cut(s)	339, 503
BseBI	CCWGG	2 cut(s)	263, 509
BseDI	CCNNGG	2 cut(s)	262, 687
BseGI	GGATG	2 cut(s)	736, 769
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	339, 503
BseRI	GAGGAG	1 cut(s)	784
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	5 cut(s)	61, 113, 197, 424, 722
BseYI	CCCAGC	1 cut(s)	573
BshFI	GGCC	1 cut(s)	618
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	340, 728
BsmBI	CGTCTC	2 cut(s)	340, 728
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	414, 488
Bsp143I	GATC	4 cut(s)	207, 442, 466, 776
BspACI	CCGC	2 cut(s)	665, 707
BspANI	GGCC	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	241, 506
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	2 cut(s)	215, 784
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	339, 503
BssECI	CCNNGG	2 cut(s)	262, 687
BssMI	GATC	4 cut(s)	207, 442, 466, 776
BssNI	GRCGYC	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	263, 509
Bst4CI	ACNGT	2 cut(s)	601, 688
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	798
BstDSI	CCRYGG	1 cut(s)	687
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	736, 769
BstH2I	RGCGCY	2 cut(s)	243, 678
BstHHI	GCGC	4 cut(s)	242, 382, 677, 694
BstKTI	GATC	4 cut(s)	210, 445, 469, 779
BstMAI	GTCTC	2 cut(s)	340, 728
BstMBI	GATC	4 cut(s)	207, 442, 466, 776
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 248
BstNI	CCWGG	2 cut(s)	263, 509
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	261, 507
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	5 cut(s)	61, 113, 197, 424, 722
BstX2I	RGATCY	1 cut(s)	776
BstYI	RGATCY	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	618
BtgI	CCRYGG	1 cut(s)	687
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	736, 769
BtsI	GCAGTG	2 cut(s)	372, 618
BtsIMutI	CAGTG	3 cut(s)	346, 372, 618
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	4 cut(s)	242, 382, 677, 694
Cfr13I	GGNCC	2 cut(s)	616, 662
CseI	GACGC	2 cut(s)	412, 745
Csp6I	GTAC	2 cut(s)	605, 835
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	1 cut(s)	703
CviQI	GTAC	2 cut(s)	605, 835
DdeI	CTNAG	1 cut(s)	798
DinI	GGCGCC	1 cut(s)	241
DpnI	GATC	4 cut(s)	209, 444, 468, 778
DpnII	GATC	4 cut(s)	207, 442, 466, 776
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	662
Eco53kI	GAGCTC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	261, 507
EcoT38I	GRGCYC	1 cut(s)	488
EgeI	GGCGCC	1 cut(s)	241
EheI	GGCGCC	1 cut(s)	241
Esp3I	CGTCTC	2 cut(s)	340, 728
FaeI	CATG	1 cut(s)	706
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	702
FauNDI	CATATG	2 cut(s)	203, 783
Fnu4HI	GCNGC	6 cut(s)	75, 102, 186, 438, 708, 711
FokI	GGATG	2 cut(s)	743, 776
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	6 cut(s)	75, 102, 186, 438, 708, 711
FspBI	CTAG	2 cut(s)	531, 635
GlaI	GCGC	4 cut(s)	241, 381, 676, 693
GluI	GCNGC	6 cut(s)	75, 102, 186, 438, 708, 711
GsaI	CCCAGC	1 cut(s)	577
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	2 cut(s)	243, 678
HaeIII	GGCC	1 cut(s)	618
HgaI	GACGC	2 cut(s)	412, 745
HhaI	GCGC	4 cut(s)	242, 382, 677, 694
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	706
Hin6I	GCGC	4 cut(s)	240, 380, 675, 692
HinP1I	GCGC	4 cut(s)	240, 380, 675, 692
HincII	GTYRAC	2 cut(s)	199, 597
HindII	GTYRAC	2 cut(s)	199, 597
HinfI	GANTC	2 cut(s)	254, 639
HphI	GGTGA	3 cut(s)	158, 523, 589
Hpy166II	GTNNAC	2 cut(s)	199, 597
Hpy188I	TCNGA	2 cut(s)	471, 748
Hpy188III	TCNNGA	5 cut(s)	57, 274, 359, 560, 643
Hpy8I	GTNNAC	2 cut(s)	199, 597
HpyAV	CCTTC	3 cut(s)	398, 649, 653
HpyCH4III	ACNGT	2 cut(s)	601, 688
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 248
HpyF3I	CTNAG	1 cut(s)	798
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	706
HspAI	GCGC	4 cut(s)	240, 380, 675, 692
KasI	GGCGCC	1 cut(s)	239
Kzo9I	GATC	4 cut(s)	207, 442, 466, 776
LguI	GCTCTTC	1 cut(s)	237
Lsp1109I	GCAGC	5 cut(s)	61, 113, 197, 424, 722
MaeI	CTAG	2 cut(s)	531, 635
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	209, 444, 468, 778
MboI	GATC	4 cut(s)	207, 442, 466, 776
MboII	GAAGA	3 cut(s)	155, 224, 484
MflI	RGATCY	1 cut(s)	776
MhlI	GDGCHC	2 cut(s)	414, 488
MluCI	AATT	4 cut(s)	157, 827, 848, 856
Mly113I	GGCGCC	1 cut(s)	240
MseI	TTAA	2 cut(s)	846, 862
MslI	CAYNNNNRTG	1 cut(s)	357
MspR9I	CCNGG	2 cut(s)	263, 509
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	263, 509
MwoI	GCNNNNNNNGC	2 cut(s)	185, 248
NarI	GGCGCC	1 cut(s)	240
NdeI	CATATG	2 cut(s)	203, 783
NdeII	GATC	4 cut(s)	207, 442, 466, 776
NlaIII	CATG	1 cut(s)	706
NlaIV	GGNNCC	2 cut(s)	241, 506
PaeR7I	CTCGAG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	254, 639
PkrI	GCNGC	6 cut(s)	76, 103, 187, 439, 709, 712
PluTI	GGCGCC	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	261, 507
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	573
PspGI	CCWGG	2 cut(s)	261, 507
PspN4I	GGNNCC	2 cut(s)	241, 506
PspPI	GGNCC	2 cut(s)	616, 662
PstI	CTGCAG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	776
RsaI	GTAC	2 cut(s)	606, 836
RsaNI	GTAC	2 cut(s)	605, 835
RseI	CAYNNNNRTG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	846, 862
SatI	GCNGC	6 cut(s)	75, 102, 186, 438, 708, 711
Sau3AI	GATC	4 cut(s)	207, 442, 466, 776
Sau96I	GGNCC	2 cut(s)	616, 662
ScrFI	CCNGG	2 cut(s)	263, 509
SduI	GDGCHC	2 cut(s)	414, 488
SfcI	CTRYAG	1 cut(s)	438
SfoI	GGCGCC	1 cut(s)	241
Sfr274I	CTCGAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
SpeI	ACTAGT	1 cut(s)	530
Sse9I	AATT	4 cut(s)	157, 827, 848, 856
SsiI	CCGC	2 cut(s)	665, 707
SspDI	GGCGCC	1 cut(s)	239
SspMI	CTAG	2 cut(s)	531, 635
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	2 cut(s)	261, 507
TaaI	ACNGT	2 cut(s)	601, 688
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	58, 817
TasI	AATT	4 cut(s)	157, 827, 848, 856
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	2 cut(s)	254, 639
Tru1I	TTAA	2 cut(s)	846, 862
Tru9I	TTAA	2 cut(s)	846, 862
TscAI	CASTG	3 cut(s)	346, 372, 618
TseI	GCWGC	5 cut(s)	74, 101, 185, 437, 710
TspDTI	ATGAA	4 cut(s)	73, 341, 691, 731
TspGWI	ACGGA	2 cut(s)	322, 832
TspRI	CASTG	3 cut(s)	346, 372, 618
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	57
XspI	CTAG	2 cut(s)	531, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.