Rmu_sc0001227.1_g000019

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001227.1
OG0000830
Physical Location & Seq
Reverse (-)
68402 .. 69623
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001227.1_g000019.1.cds

Sequence Viewer

Length: 480 bp
atggaatgcgacctctggccagtgaacaatgacccagaaaaccctcaaaacattataccttggacatctccagagaaagtcatgatcgaaaacgagcaggagttatacaccaagctctccaccctccaaaaaccctctcgaggtggctgggatgctgctattttcatcatctttgttgaggcagcagagaggtttgcgtattatggcttatctggtaacctcatcatatacctcacaaattatcttcaccagcccacggccatcgcagccaagaacgtcaacatatggatcggtgtgtcgtccctctttgctcttcttggcgccattgtagccgattctttcctgggtcggttcaagaccatcattctatccacctccatttatttgatgaagatgtctgcctcgatgaatgctcttggacaagctgtggctgcagggattgaaagtgtcaatccaggtgattactcctaccgggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

159

Amino Acids

17.61

Weight (kDa)

4.8

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AclWI GGATC 1 cut(s) 296
AcoI YGGCCR 2 cut(s) 17, 258
AcyI GRCGYC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 140, 256
AgsI TTSAA 2 cut(s) 355, 443
AjnI CCWGG 2 cut(s) 342, 454
AluBI AGCT 2 cut(s) 115, 425
AluI AGCT 2 cut(s) 115, 425
AlwI GGATC 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 2 cut(s) 17, 258
ApeKI GCWGC 4 cut(s) 155, 182, 266, 431
AspLEI GCGC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 239, 470
AvaI CYCGRG 1 cut(s) 138
BalI TGGCCA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 142, 194, 278, 418
BccI CCATC 2 cut(s) 269, 368
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 2 cut(s) 344, 456
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 1 cut(s) 478
BfmI CTRYAG 1 cut(s) 432
BfoI RGCGCY 1 cut(s) 324
BisI GCNGC 4 cut(s) 156, 183, 267, 432
BlsI GCNGC 4 cut(s) 157, 184, 268, 433
Bme1390I CCNGG 3 cut(s) 344, 456, 473
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 3 cut(s) 344, 456, 473
BmsI GCATC 1 cut(s) 142
BpmI CTGGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 59, 255, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 256
Bse1I ACTGG 1 cut(s) 20
BseBI CCWGG 2 cut(s) 344, 456
BseDI CCNNGG 3 cut(s) 59, 255, 343
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 140, 256
BseNI ACTGG 1 cut(s) 20
BseXI GCAGC 4 cut(s) 142, 194, 278, 418
BseYI CCCAGC 1 cut(s) 147
BshFI GGCC 2 cut(s) 19, 260
BshNI GGYRCC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 140, 256
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 11, 415
BsnI GGCC 2 cut(s) 19, 260
BsoBI CYCGRG 1 cut(s) 138
Bsp143I GATC 2 cut(s) 84, 288
BspANI GGCC 2 cut(s) 19, 260
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 322
BspMAI CTGCAG 1 cut(s) 436
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 318
BspT107I GGYRCC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 3 cut(s) 59, 255, 343
BssMI GATC 2 cut(s) 84, 288
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 2 cut(s) 344, 456
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 255
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 2 cut(s) 87, 291
BstMBI GATC 2 cut(s) 84, 288
BstMWI GCNNNNNNNGC 3 cut(s) 266, 329, 431
BstNI CCWGG 2 cut(s) 344, 456
BstPI GGTNACC 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 342, 454, 471
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 4 cut(s) 142, 194, 278, 418
BsuRI GGCC 2 cut(s) 19, 260
BtgI CCRYGG 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 27
CciI TCATGA 1 cut(s) 81
CfoI GCGC 1 cut(s) 323
CviAII CATG 1 cut(s) 82
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 86, 290
DpnII GATC 2 cut(s) 84, 288
EaeI YGGCCR 2 cut(s) 17, 258
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 342, 454
EcoT14I CCWWGG 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 85
FaiI YATR 8 cut(s) 56, 83, 106, 204, 227, 229, 284, 286
FaqI GGGAC 1 cut(s) 286
FatI CATG 1 cut(s) 81
FauNDI CATATG 1 cut(s) 284
Fnu4HI GCNGC 4 cut(s) 156, 183, 267, 432
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 156, 183, 267, 432
FspBI CTAG 1 cut(s) 478
GlaI GCGC 1 cut(s) 322
GluI GCNGC 4 cut(s) 156, 183, 267, 432
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 19, 260
HapII CCGG 1 cut(s) 472
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 321
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 472
HphI GGTGA 2 cut(s) 239, 470
Hpy166II GTNNAC 2 cut(s) 25, 280
Hpy188III TCNNGA 4 cut(s) 71, 82, 138, 355
Hpy8I GTNNAC 2 cut(s) 25, 280
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 329, 431
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 1 cut(s) 321
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 321
KasI GGCGCC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 84, 288
LguI GCTCTTC 1 cut(s) 318
Lsp1109I GCAGC 4 cut(s) 142, 194, 278, 418
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 478
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 86, 290
MboI GATC 2 cut(s) 84, 288
MboII GAAGA 3 cut(s) 236, 305, 403
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 1 cut(s) 238
MluNI TGGCCA 1 cut(s) 19
Mly113I GGCGCC 1 cut(s) 321
Mox20I TGGCCA 1 cut(s) 19
MscI TGGCCA 1 cut(s) 19
Msp20I TGGCCA 1 cut(s) 19
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 3 cut(s) 344, 456, 473
Mva1269I GAATGC 2 cut(s) 11, 415
MvaI CCWGG 2 cut(s) 344, 456
MwoI GCNNNNNNNGC 3 cut(s) 266, 329, 431
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 284
NdeII GATC 2 cut(s) 84, 288
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 138
PagI TCATGA 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 318
PctI GAATGC 2 cut(s) 11, 415
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 4 cut(s) 157, 184, 268, 433
PluTI GGCGCC 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 342, 454
PspEI GGTNACC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 2 cut(s) 342, 454
PspN4I GGNNCC 1 cut(s) 322
PstI CTGCAG 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 318
SatI GCNGC 4 cut(s) 156, 183, 267, 432
Sau3AI GATC 2 cut(s) 84, 288
ScrFI CCNGG 3 cut(s) 344, 456, 473
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 432
SfoI GGCGCC 1 cut(s) 322
Sfr274I CTCGAG 1 cut(s) 138
SlaI CTCGAG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 238
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 478
StyD4I CCNGG 3 cut(s) 342, 454, 471
StyI CCWWGG 1 cut(s) 59
TaiI ACGT 1 cut(s) 279
TaqI TCGA 3 cut(s) 87, 139, 404
TasI AATT 1 cut(s) 238
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 27
TseI GCWGC 4 cut(s) 155, 182, 266, 431
TspDTI ATGAA 3 cut(s) 154, 404, 422
TspRI CASTG 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 138
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.