pycom02g24400

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000830
Physical Location & Seq
Forward (+)
22536193 .. 22537008
816 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24400.1

Sequence Viewer

Length: 774 bp
ATGATCGTTGACGACCATGATGCTTCATGCATGACCAGAAATCCATGGAGATTATGCTCACAAAATCAAGTAGAACAAGTAAAGCTCATCCTACGCCTGATTCCCGAATGGATGTGTTGCTTAATGTTTGCTGTAATCCAGTCCTTTTTCCAGGCCACCTTCACCAAGCAAGGAAGCACAATGGTCCGGTCAATTGGTTCAAACTTTATGCTTCCCGAAGCATCACTTCAAATCTTTGTTAGCCTGACAGTAATAGTTGTCATTCCAATCTATGATCGTGTTTTTGTCCCAACTGCCCGAAAATTCACGGGGCAGTCCTCTGGCATCACCATCTTACAAAGAATCGGCATTGGTCTATTTCTGTCCATAATCACCATGGTTGTGTCAGGTTTGGTAGAAGCGAAAAGGGTTAGCATTGCAAGAGAACACAACCTCTTGGACAGCCCGAAAACAATAGTGCCAATGAGAGTGTGGTGGTTAATTCCACAGTACATGGTATGCGGTTTATCTGATGCTTTTGCATTGGTTGGAATCCAAGAGTTCTTTTACGATCAAATCGTTATAGGTGCTGGAAACTTCGTGAGCAGTAGTATAAGCGAAACATGGCTTAGTGACAATATCAATCGTGCCCACCTCGATTGCTTCTATTGGGTAATTACTGCACTAAGCACTGTTAATTTTTTCATTTATGTGTGGATTGCTAAACGTTTCATATACAAAGTGTTTGAAACAGAAGGGACCGAGAAGCAGACAGAGCCGTCTCAATCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

258

Amino Acids

29.18

Weight (kDa)

6.82

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 10 - 218 1.6e-36 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 757
AciI CCGC 1 cut(s) 501
AclI AACGTT 1 cut(s) 706
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 1 cut(s) 491
AgsI TTSAA 3 cut(s) 201, 230, 728
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 765
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 184, 738
AsuHPI GGTGA 3 cut(s) 154, 319, 364
AvaII GGWCC 2 cut(s) 184, 738
BaeGI GKGCMC 1 cut(s) 631
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 742
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 765
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 2 cut(s) 184, 738
BmgT120I GGNCC 2 cut(s) 184, 738
BmiI GGNNCC 1 cut(s) 739
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 4 cut(s) 10, 230, 333, 502
BsaJI CCNNGG 2 cut(s) 44, 375
BsaWI WCCGGW 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 2 cut(s) 44, 375
BseGI GGATG 2 cut(s) 87, 117
BseMI GCAATG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 139
BseSI GKGCMC 1 cut(s) 631
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 272, 751
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmFI GGGAC 2 cut(s) 272, 751
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 3 cut(s) 3, 274, 550
Bsp19I CCATGG 2 cut(s) 44, 375
BspACI CCGC 1 cut(s) 501
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 739
BsrDI GCAATG 1 cut(s) 414
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 44, 375
BssMI GATC 3 cut(s) 3, 274, 550
BssT1I CCWWGG 2 cut(s) 44, 375
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 250, 489, 673
BstDEI CTNAG 2 cut(s) 608, 665
BstDSI CCRYGG 2 cut(s) 44, 375
BstF5I GGATG 2 cut(s) 87, 117
BstKTI GATC 3 cut(s) 6, 277, 553
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 3 cut(s) 3, 274, 550
BstMWI GCNNNNNNNGC 1 cut(s) 754
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 631
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 2 cut(s) 44, 375
BtsCI GGATG 2 cut(s) 87, 117
BtsIMutI CAGTG 1 cut(s) 669
Cfr13I GGNCC 2 cut(s) 184, 738
Csp6I GTAC 1 cut(s) 490
CspCI CAANNNNNGTGG 2 cut(s) 620, 655
CviAII CATG 7 cut(s) 17, 27, 31, 45, 376, 493, 603
CviJI RGCY 6 cut(s) 85, 155, 243, 444, 607, 757
CviKI_1 RGCY 6 cut(s) 85, 155, 243, 444, 607, 757
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 608, 665
DpnI GATC 3 cut(s) 5, 276, 552
DpnII GATC 3 cut(s) 3, 274, 550
DrdI GACNNNNNNGTC 1 cut(s) 757
DseDI GACNNNNNNGTC 1 cut(s) 757
Eco130I CCWWGG 2 cut(s) 44, 375
Eco47I GGWCC 2 cut(s) 184, 738
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 44, 375
EcoT22I ATGCAT 1 cut(s) 32
ErhI CCWWGG 2 cut(s) 44, 375
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 7 cut(s) 20, 30, 34, 48, 379, 496, 606
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 2 cut(s) 272, 751
FatI CATG 7 cut(s) 16, 26, 30, 44, 375, 492, 602
FokI GGATG 2 cut(s) 74, 124
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 187
Hin1II CATG 7 cut(s) 20, 30, 34, 48, 379, 496, 606
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 3 cut(s) 100, 342, 531
HpaII CCGG 1 cut(s) 187
HphI GGTGA 3 cut(s) 154, 319, 364
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 3 cut(s) 104, 215, 580
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 169, 728
HpyCH4III ACNGT 3 cut(s) 250, 489, 673
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 4 cut(s) 30, 419, 521, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 754
HpyF3I CTNAG 2 cut(s) 608, 665
HpySE526I ACGT 1 cut(s) 706
Hsp92II CATG 7 cut(s) 20, 30, 34, 48, 379, 496, 606
Kzo9I GATC 3 cut(s) 3, 274, 550
LweI GCATC 4 cut(s) 10, 230, 333, 502
MaeII ACGT 1 cut(s) 706
MaeIII GTNAC 1 cut(s) 611
MalI GATC 3 cut(s) 5, 276, 552
MboI GATC 3 cut(s) 3, 274, 550
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 5 cut(s) 192, 302, 480, 654, 676
MmeI TCCRAC 1 cut(s) 508
MnlI CCTC 3 cut(s) 328, 443, 644
Mph1103I ATGCAT 1 cut(s) 32
MseI TTAA 3 cut(s) 122, 479, 675
MslI CAYNNNNRTG 2 cut(s) 380, 689
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 754
NcoI CCATGG 2 cut(s) 44, 375
NdeII GATC 3 cut(s) 3, 274, 550
NlaIII CATG 7 cut(s) 20, 30, 34, 48, 379, 496, 606
NlaIV GGNNCC 1 cut(s) 739
NmuCI GTSAC 1 cut(s) 611
NsiI ATGCAT 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PfeI GAWTC 3 cut(s) 100, 342, 531
Psp1406I AACGTT 1 cut(s) 706
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 739
PspPI GGNCC 2 cut(s) 184, 738
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 2 cut(s) 380, 689
SaqAI TTAA 3 cut(s) 122, 479, 675
Sau3AI GATC 3 cut(s) 3, 274, 550
Sau96I GGNCC 2 cut(s) 184, 738
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 631
SetI ASST 7 cut(s) 87, 161, 391, 435, 568, 636, 709
SfaNI GCATC 4 cut(s) 10, 230, 333, 502
SinI GGWCC 2 cut(s) 184, 738
SmiMI CAYNNNNRTG 2 cut(s) 380, 689
Sse9I AATT 5 cut(s) 192, 302, 480, 654, 676
SsiI CCGC 1 cut(s) 501
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 44, 375
TaaI ACNGT 3 cut(s) 250, 489, 673
TaiI ACGT 1 cut(s) 709
TaqI TCGA 1 cut(s) 636
TaqII GACCGA 1 cut(s) 755
TasI AATT 5 cut(s) 192, 302, 480, 654, 676
TatI WGTACW 1 cut(s) 489
TfiI GAWTC 3 cut(s) 100, 342, 531
Tru1I TTAA 3 cut(s) 122, 479, 675
Tru9I TTAA 3 cut(s) 122, 479, 675
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 15, 673, 700
TspRI CASTG 1 cut(s) 676
VpaK11BI GGWCC 2 cut(s) 184, 738
XapI RAATTY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 2 cut(s) 373, 468
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.