Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Reverse (-)

3295281 .. 3306861

Gene Structure 11581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1039200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAATATTGCTTCTGGAAAACCCAGTAGGGGTGGCTGGAATGCTGCTATTTTCATCATCTTGGTTGAGGTGGCCCAGCAGTTCGCATTCTATGGGTTGGCAAGTAACCTCATCATGTACCTCACGGATGTTTTGGACCAGCCCTTAGCCGCGGCGGCTAAGAATGTTAACACCTGGCTTGGTGTCTCATCGGTCTTCCCTGTCCTCGGAGCCTTTCTTGCAGATTCATACTTTGGTCGGTTCAAAACCATAGTCTTCTCCATCACCATCTATTTCCTGGGCATGGTTCTTTTGACTCTGTCCGTCTCAATAATTCCTCCACAAAGTGGCCGAGTAGTGTTCTTTGTGGCGCTGTACATTTTATCGGTGGCTGAAGGTGGGCAGAAGCCATGCGTGCAAACATTTGCAGCAGACCAGTTCGATGAGAACACGCCTGAAGAGATAAAGGTCAAGAGCTCCTTCTTCAACTGGTGGTACTTGGGGGTGGTATTTGGTGCCACTTCTGCCACACTGGGAGTCGTATATCTCCAGGATAATATTGGGTGGGGATTAGGGTTTGGAATATTGGCAGGAGTTTTGGTGGTGTCACTAGTATCTTTTTTGTTGGGAACGAAGAGGTACAGGAAGCAAATGCCTCCAGGGAGCCCTTTTACTATGGTGGTACAAGTGCTCGTTGCAGCAGCTCGGAAATGGCATGTCAATAAGGCACTCAATAGCGAGTGTGTTTATTATGGAGATGAGGGTGAAGCCCTGCTACAAGGTCAGTCGCAGCCTCTAGTTGTGGCTCGTGCTAATCAACTCAGGTACAAACTTAATATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

275

Amino Acids

29.89

Weight (kDa)

9.0

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	27 - 209	3.7e-07	Major Facilitator Superfamily
PTR2	PF00854	81 - 231	1.4e-40	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	150, 152, 155
AcoI	YGGCCR	1 cut(s)	328
AcuI	CTGAAG	2 cut(s)	393, 456
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	6 cut(s)	119, 356, 476, 620, 663, 806
AfiI	CCNNNNNNNGG	4 cut(s)	29, 206, 283, 326
AgsI	TTSAA	2 cut(s)	244, 466
AhlI	ACTAGT	1 cut(s)	589
AjnI	CCWGG	4 cut(s)	173, 276, 528, 637
AluBI	AGCT	2 cut(s)	456, 683
AluI	AGCT	2 cut(s)	456, 683
Alw21I	GWGCWC	2 cut(s)	458, 672
Alw26I	GTCTC	2 cut(s)	190, 310
AoxI	GGCC	2 cut(s)	72, 328
ApeKI	GCWGC	5 cut(s)	44, 407, 677, 680, 769
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	2 cut(s)	73, 136
AsuHPI	GGTGA	2 cut(s)	256, 755
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	458, 647
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BauI	CACGAG	1 cut(s)	786
BbsI	GAAGAC	2 cut(s)	187, 247
Bbv12I	GWGCWC	2 cut(s)	458, 672
BbvI	GCAGC	5 cut(s)	31, 419, 689, 692, 781
BccI	CCATC	2 cut(s)	269, 275
BciT130I	CCWGG	4 cut(s)	175, 278, 530, 639
BcoDI	GTCTC	2 cut(s)	190, 310
BcuI	ACTAGT	1 cut(s)	589
BfaI	CTAG	2 cut(s)	590, 776
BfoI	RGCGCY	1 cut(s)	353
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	8 cut(s)	45, 150, 153, 156, 408, 678, 681, 770
BlsI	GCNGC	8 cut(s)	46, 151, 154, 157, 409, 679, 682, 771
Bme1390I	CCNGG	4 cut(s)	175, 278, 530, 639
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	73, 136
BmiI	GGNNCC	3 cut(s)	211, 496, 644
BmrFI	CCNGG	4 cut(s)	175, 278, 530, 639
BmrI	ACTGGG	2 cut(s)	18, 521
BmuI	ACTGGG	2 cut(s)	18, 521
BpiI	GAAGAC	2 cut(s)	187, 247
BpmI	CTGGAG	2 cut(s)	512, 621
Bpu10I	CCTNAGC	1 cut(s)	145
BsaJI	CCNNGG	4 cut(s)	150, 205, 277, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 206, 283, 326
Bse1I	ACTGG	4 cut(s)	24, 415, 473, 516
BseBI	CCWGG	4 cut(s)	175, 278, 530, 639
BseDI	CCNNGG	4 cut(s)	150, 205, 277, 638
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	4 cut(s)	29, 206, 283, 326
BseMII	CTCAG	1 cut(s)	814
BseNI	ACTGG	4 cut(s)	24, 415, 473, 516
BseXI	GCAGC	5 cut(s)	31, 419, 689, 692, 781
BseYI	CCCAGC	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	74, 330
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	2 cut(s)	458, 672
BslI	CCNNNNNNNGG	4 cut(s)	29, 206, 283, 326
BsmAI	GTCTC	2 cut(s)	190, 310
BsmBI	CGTCTC	1 cut(s)	310
BsmI	GAATGC	2 cut(s)	46, 86
BsnI	GGCC	2 cut(s)	74, 330
Bsp1286I	GDGCHC	3 cut(s)	458, 647, 672
Bsp1407I	TGTACA	1 cut(s)	354
BspACI	CCGC	3 cut(s)	150, 152, 155
BspANI	GGCC	2 cut(s)	74, 330
BspCNI	CTCAG	1 cut(s)	813
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	3 cut(s)	211, 496, 644
BspT107I	GGYRCC	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	4 cut(s)	24, 415, 473, 516
BssECI	CCNNGG	4 cut(s)	150, 205, 277, 638
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	4 cut(s)	175, 278, 530, 639
Bst6I	CTCTTC	2 cut(s)	432, 608
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	145, 159, 800
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	190, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 218, 394, 503
BstNI	CCWGG	4 cut(s)	175, 278, 530, 639
BstNSI	RCATGY	1 cut(s)	698
BstSCI	CCNGG	4 cut(s)	173, 276, 528, 637
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	5 cut(s)	31, 419, 689, 692, 781
BstV2I	GAAGAC	2 cut(s)	187, 247
BsuRI	GGCC	2 cut(s)	74, 330
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	73, 136
Cfr42I	CCGCGG	1 cut(s)	153
Csp6I	GTAC	6 cut(s)	118, 355, 475, 619, 662, 805
CviAII	CATG	4 cut(s)	115, 283, 390, 695
CviQI	GTAC	6 cut(s)	118, 355, 475, 619, 662, 805
DdeI	CTNAG	3 cut(s)	145, 159, 800
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	432, 608
EarI	CTCTTC	2 cut(s)	432, 608
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	458, 647
Eco47I	GGWCC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	393, 456
EcoICRI	GAGCTC	1 cut(s)	456
EcoRII	CCWGG	4 cut(s)	173, 276, 528, 637
EcoT38I	GRGCYC	2 cut(s)	458, 647
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	4 cut(s)	118, 286, 393, 698
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	4 cut(s)	114, 282, 389, 694
Fnu4HI	GCNGC	8 cut(s)	45, 150, 153, 156, 408, 678, 681, 770
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	2 cut(s)	458, 647
Fsp4HI	GCNGC	8 cut(s)	45, 150, 153, 156, 408, 678, 681, 770
FspBI	CTAG	2 cut(s)	590, 776
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	8 cut(s)	45, 150, 153, 156, 408, 678, 681, 770
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	2 cut(s)	512, 621
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	74, 330
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	118, 286, 393, 698
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	3 cut(s)	224, 295, 516
HpaI	GTTAAC	1 cut(s)	169
HphI	GGTGA	2 cut(s)	256, 755
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	209, 687
Hpy188III	TCNNGA	2 cut(s)	15, 451
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	368, 469
HpyCH4V	TGCA	5 cut(s)	221, 397, 407, 677, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 218, 394, 503
HpyF3I	CTNAG	3 cut(s)	145, 159, 800
Hsp92II	CATG	4 cut(s)	118, 286, 393, 698
HspAI	GCGC	1 cut(s)	350
KspAI	GTTAAC	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	153
LmnI	GCTCC	3 cut(s)	209, 461, 642
Lsp1109I	GCAGC	5 cut(s)	31, 419, 689, 692, 781
MaeI	CTAG	2 cut(s)	590, 776
MaeIII	GTNAC	2 cut(s)	104, 585
MboII	GAAGA	5 cut(s)	187, 247, 449, 454, 625
MhlI	GDGCHC	3 cut(s)	458, 647, 672
MluCI	AATT	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	289, 525
MnlI	CCTC	9 cut(s)	61, 119, 131, 215, 327, 609, 645, 733, 783
MseI	TTAA	2 cut(s)	168, 813
MspA1I	CMGCKG	1 cut(s)	152
MspR9I	CCNGG	4 cut(s)	175, 278, 530, 639
Mva1269I	GAATGC	2 cut(s)	46, 86
MvaI	CCWGG	4 cut(s)	175, 278, 530, 639
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	155, 218, 394, 503
NlaIII	CATG	4 cut(s)	118, 286, 393, 698
NlaIV	GGNNCC	3 cut(s)	211, 496, 644
NmeAIII	GCCGAG	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	585
NspI	RCATGY	1 cut(s)	698
PctI	GAATGC	2 cut(s)	46, 86
PfeI	GAWTC	1 cut(s)	224
PflFI	GACNNNGTC	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	326
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	8 cut(s)	46, 151, 154, 157, 409, 679, 682, 771
PleI	GAGTC	2 cut(s)	289, 524
PpsI	GAGTC	2 cut(s)	289, 524
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	4 cut(s)	173, 276, 528, 637
PspFI	CCCAGC	1 cut(s)	75
PspGI	CCWGG	4 cut(s)	173, 276, 528, 637
PspN4I	GGNNCC	3 cut(s)	211, 496, 644
PspPI	GGNCC	2 cut(s)	73, 136
PsyI	GACNNNGTC	1 cut(s)	298
RsaI	GTAC	6 cut(s)	119, 356, 476, 620, 663, 806
RsaNI	GTAC	6 cut(s)	118, 355, 475, 619, 662, 805
SacI	GAGCTC	1 cut(s)	458
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	168, 813
SatI	GCNGC	8 cut(s)	45, 150, 153, 156, 408, 678, 681, 770
Sau96I	GGNCC	2 cut(s)	73, 136
SchI	GAGTC	2 cut(s)	289, 525
ScrFI	CCNGG	4 cut(s)	175, 278, 530, 639
SduI	GDGCHC	3 cut(s)	458, 647, 672
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	589
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	3 cut(s)	150, 152, 155
SspI	AATATT	4 cut(s)	7, 538, 564, 817
SspMI	CTAG	2 cut(s)	590, 776
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	4 cut(s)	173, 276, 528, 637
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	312
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	3 cut(s)	152, 155, 158
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	168, 813
Tru9I	TTAA	2 cut(s)	168, 813
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	5 cut(s)	44, 407, 677, 680, 769
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	3 cut(s)	17, 43, 216
TspGWI	ACGGA	2 cut(s)	140, 292
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	136
XceI	RCATGY	1 cut(s)	698
XcmI	CCANNNNNNNNNTGG	2 cut(s)	274, 536
XspI	CTAG	2 cut(s)	590, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.