Rorug01G0042400

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000830
Physical Location & Seq
Reverse (-)
7100364 .. 7105843
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0042400.1

Sequence Viewer

Length: 1245 bp
ATGGGTGTGATTAATCTCTACCACGCTTCCTCACTTCACTTCACTAATCCCACTTCCCCAATACCCAGTTCTAAAAGGAACTCTGTTATAGCCATGTCCACCATCCCTGTGCAGCAGCAGCAGCCGCCACTAGTCAATGACGGTCAACACCGCTTGACCGGCGACTCTTTCATCCGACCCCATTTGAGGACCTTGTCTCCTTATCAACCCATTTTACCGTTTGAGGTGTTGTCAGCCCGACTTGGAAGGAAGCCTGAAGATATCATCAAATTAGATGCAAATGAAAACCCTTACGGTCCTCCTCCGGAGGTTTCTGAAGCTTTGGGTGCGTTGAAATTTCCATATATTTATCCAGACCCTGAAAGCCGTCGCTTACGTGCTGCCCTTGCAAAGGATTCAGGCCTTGGTGCTGAATATCTTCTTGTAGGATGTGGTGCGGATGAACTCATTGATTTGATCATGAGATGTGTCCTTGATCCGGGTGACAAGATTGTGGACTGCCCTCCAACATTCACAATGTATGAATTTGATGCTGCAGTCAATGGGGCATCCGTCATTAAAGTGCCGAGGAAGTCAAACTTTAGCTTGAATGTAGAGGTCATCTCAGATATAGTTAAACAAGAAAAACCTAAATGCATATTCCTAACTTCTCCGAACAATCCAGATGGGAGTATAATCAGCGACGACATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTTGTTCTGGATGAAGCATATATTGAGTTTTCTGGACTTGAATCAAGGATGCAATGGGTGAAGAAACATGAGAATTTAATTGTTCTCCGAACATTCAGCAAACGAGCTGGCTTAGCCGGACTCCGGGTGGGATACGGAGCATTTCCCTTGACAATCATTGAATATCTCTGGAGAGCAAAGCAACCATATAATGTGTCCGTTGCTGCTGAAGTTTCTGCCTGCGCAGCATTGCAGAATCCCACCTATCTTGAGAACGTGAAAAATGCTTTACTGCAAGAAAGGGAGAGGCTTTATCACCTTCTCAAGGAGCTGCCATTTCTCAAGCCTTATCCTAGCTATTCCAATTTCATTCTTTGTGAGGTCACATCCGGAATGGATGCTAAGAAACTCAAGGAGGACCTTGCAAAAATGGGTGTGATGATTCGTCATTACAACAACAAAGAGTTGAGCGGTTATGTTCGCGTATCAGTTGGGAAGCCTGAACACACAGATGCCTTGATTGATTGCCTCAGACGCTTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

414

Amino Acids

46.22

Weight (kDa)

7.08

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 87 - 408 1.9e-53 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 943
AccBSI CCGCTC 1 cut(s) 1170
AccII CGCG 1 cut(s) 1182
AccIII TCCGGA 2 cut(s) 304, 1088
AciI CCGC 4 cut(s) 125, 151, 437, 1170
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 3 cut(s) 335, 524, 793
AcuI CTGAAG 3 cut(s) 276, 336, 948
AfiI CCNNNNNNNGG 5 cut(s) 186, 391, 478, 843, 1024
AgsI TTSAA 5 cut(s) 334, 589, 697, 761, 881
AhlI ACTAGT 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 6 cut(s) 320, 585, 709, 827, 1030, 1056
AluI AGCT 6 cut(s) 320, 585, 709, 827, 1030, 1056
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 359
Aor13HI TCCGGA 2 cut(s) 304, 1088
AoxI GGCC 1 cut(s) 400
ApeKI GCWGC 9 cut(s) 112, 115, 118, 121, 380, 533, 923, 944, 1030
ApoI RAATTY 3 cut(s) 335, 524, 793
AseI ATTAAT 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 3 cut(s) 189, 296, 1117
AsuC2I CCSGG 2 cut(s) 480, 845
AsuHPI GGTGA 3 cut(s) 494, 790, 1007
AvaII GGWCC 3 cut(s) 189, 296, 1117
BbvI GCAGC 9 cut(s) 124, 127, 130, 133, 367, 520, 910, 956, 1017
BccI CCATC 2 cut(s) 110, 659
BceAI ACGGC 1 cut(s) 351
BciVI GTATCC 1 cut(s) 845
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 2 cut(s) 480, 845
BcoDI GTCTC 1 cut(s) 201
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 2 cut(s) 131, 1053
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 845
BlpI GCTNAGC 1 cut(s) 832
Bme1390I CCNGG 2 cut(s) 480, 845
Bme18I GGWCC 3 cut(s) 189, 296, 1117
BmgT120I GGNCC 3 cut(s) 189, 296, 1117
BmrFI CCNGG 2 cut(s) 480, 845
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 6 cut(s) 265, 520, 557, 759, 1087, 1201
BmuI ACTGGG 1 cut(s) 60
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BpmI CTGGAG 1 cut(s) 910
Bpu1102I GCTNAGC 1 cut(s) 832
BpuEI CTTGAG 5 cut(s) 725, 989, 1007, 1025, 1094
BpuMI CCSGG 2 cut(s) 480, 845
BsaAI YACGTR 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 403, 566
BsaWI WCCGGW 2 cut(s) 304, 1088
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 5 cut(s) 186, 391, 478, 843, 1024
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 2 cut(s) 779, 947
BseAI TCCGGA 2 cut(s) 304, 1088
BseDI CCNNGG 2 cut(s) 403, 566
BseGI GGATG 9 cut(s) 102, 171, 434, 445, 548, 736, 774, 1085, 1102
BseLI CCNNNNNNNGG 5 cut(s) 186, 391, 478, 843, 1024
BseMI GCAATG 2 cut(s) 779, 947
BseMII CTCAG 2 cut(s) 618, 1243
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 291
BseXI GCAGC 9 cut(s) 124, 127, 130, 133, 367, 520, 910, 956, 1017
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 1182
BshFI GGCC 1 cut(s) 402
BsiSI CCGG 6 cut(s) 159, 305, 479, 837, 844, 1089
BslI CCNNNNNNNGG 5 cut(s) 186, 391, 478, 843, 1024
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 402
Bsp13I TCCGGA 2 cut(s) 304, 1088
Bsp143I GATC 2 cut(s) 456, 475
Bsp1720I GCTNAGC 1 cut(s) 832
BspACI CCGC 4 cut(s) 125, 151, 437, 1170
BspANI GGCC 1 cut(s) 402
BspCNI CTCAG 2 cut(s) 617, 1242
BspEI TCCGGA 2 cut(s) 304, 1088
BspFNI CGCG 1 cut(s) 1182
BspHI TCATGA 1 cut(s) 459
BspMAI CTGCAG 1 cut(s) 538
BspPI GGATC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 1170
BsrDI GCAATG 2 cut(s) 779, 947
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 403, 566
BssMI GATC 2 cut(s) 456, 475
BssT1I CCWWGG 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 143, 219, 296
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 829, 940
BstDEI CTNAG 4 cut(s) 604, 832, 1101, 1229
BstENI CCTNNNNNAGG 2 cut(s) 389, 1022
BstF5I GGATG 9 cut(s) 102, 171, 434, 445, 548, 736, 774, 1085, 1102
BstFNI CGCG 1 cut(s) 1182
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 2 cut(s) 459, 478
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 2 cut(s) 456, 475
BstMWI GCNNNNNNNGC 9 cut(s) 118, 121, 124, 159, 326, 386, 833, 944, 1233
BstSCI CCNGG 2 cut(s) 478, 843
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 9 cut(s) 124, 127, 130, 133, 367, 520, 910, 956, 1017
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 9 cut(s) 102, 171, 434, 445, 548, 736, 774, 1085, 1102
Cac8I GCNNGC 2 cut(s) 829, 940
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 459
CfoI GCGC 1 cut(s) 944
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 189, 296, 1117
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CviAII CATG 3 cut(s) 94, 460, 788
DdeI CTNAG 4 cut(s) 604, 832, 1101, 1229
DpnI GATC 2 cut(s) 458, 477
DpnII GATC 2 cut(s) 456, 475
Eco130I CCWWGG 1 cut(s) 403
Eco147I AGGCCT 1 cut(s) 402
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 189, 296, 1117
Eco57I CTGAAG 3 cut(s) 276, 336, 948
EcoNI CCTNNNNNAGG 2 cut(s) 389, 1022
EcoO109I RGGNCCY 2 cut(s) 189, 1117
EcoRV GATATC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 3 cut(s) 97, 463, 791
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 3 cut(s) 93, 459, 787
FbaI TGATCA 1 cut(s) 456
FokI GGATG 9 cut(s) 89, 158, 441, 452, 535, 743, 781, 1072, 1109
FspBI CTAG 2 cut(s) 131, 1053
FspI TGCGCA 1 cut(s) 943
GlaI GCGC 1 cut(s) 943
GsuI CTGGAG 1 cut(s) 910
HaeIII GGCC 1 cut(s) 402
HapII CCGG 6 cut(s) 159, 305, 479, 837, 844, 1089
HhaI GCGC 1 cut(s) 944
Hin1II CATG 3 cut(s) 97, 463, 791
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 6 cut(s) 164, 395, 761, 840, 955, 1141
HpaII CCGG 6 cut(s) 159, 305, 479, 837, 844, 1089
HphI GGTGA 3 cut(s) 494, 790, 1007
Hpy166II GTNNAC 3 cut(s) 99, 146, 496
Hpy188I TCNGA 6 cut(s) 176, 316, 607, 654, 809, 1232
Hpy8I GTNNAC 3 cut(s) 99, 146, 496
Hpy99I CGWCG 2 cut(s) 372, 686
HpyAV CCTTC 2 cut(s) 240, 1028
HpyCH4III ACNGT 3 cut(s) 143, 219, 296
HpyCH4IV ACGT 2 cut(s) 376, 975
HpyCH4V TGCA 9 cut(s) 112, 278, 389, 536, 636, 772, 952, 994, 1124
HpyF10VI GCNNNNNNNGC 9 cut(s) 118, 121, 124, 159, 326, 386, 833, 944, 1233
HpyF3I CTNAG 4 cut(s) 604, 832, 1101, 1229
HpySE526I ACGT 2 cut(s) 376, 975
Hsp92II CATG 3 cut(s) 97, 463, 791
HspAI GCGC 1 cut(s) 942
Kpn2I TCCGGA 2 cut(s) 304, 1088
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 2 cut(s) 456, 475
LmnI GCTCC 2 cut(s) 857, 1027
Lsp1109I GCAGC 9 cut(s) 124, 127, 130, 133, 367, 520, 910, 956, 1017
LweI GCATC 6 cut(s) 265, 520, 557, 759, 1087, 1201
MaeI CTAG 2 cut(s) 131, 1053
MaeII ACGT 2 cut(s) 376, 975
MaeIII GTNAC 2 cut(s) 482, 1081
MalI GATC 2 cut(s) 458, 477
MbiI CCGCTC 1 cut(s) 1170
MboI GATC 2 cut(s) 456, 475
MboII GAAGA 3 cut(s) 269, 410, 793
MluCI AATT 6 cut(s) 269, 335, 524, 793, 798, 1063
MlyI GAGTC 2 cut(s) 158, 834
MmeI TCCRAC 2 cut(s) 199, 530
Mph1103I ATGCAT 1 cut(s) 638
MroI TCCGGA 2 cut(s) 304, 1088
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 5 cut(s) 12, 558, 615, 797, 1243
MslI CAYNNNNRTG 3 cut(s) 107, 560, 1209
MspI CCGG 6 cut(s) 159, 305, 479, 837, 844, 1089
MspR9I CCNGG 2 cut(s) 480, 845
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 9 cut(s) 118, 121, 124, 159, 326, 386, 833, 944, 1233
NciI CCSGG 2 cut(s) 480, 845
NdeII GATC 2 cut(s) 456, 475
NlaIII CATG 3 cut(s) 97, 463, 791
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 2 cut(s) 482, 1081
NsbI TGCGCA 1 cut(s) 943
NsiI ATGCAT 1 cut(s) 638
PagI TCATGA 1 cut(s) 459
PceI AGGCCT 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 4 cut(s) 395, 761, 955, 1141
PflFI GACNNNGTC 1 cut(s) 193
PleI GAGTC 2 cut(s) 158, 834
PpsI GAGTC 2 cut(s) 158, 834
Ppu21I YACGTR 1 cut(s) 377
PpuMI RGGWCCY 2 cut(s) 189, 1117
PshBI ATTAAT 1 cut(s) 12
Psp5II RGGWCCY 2 cut(s) 189, 1117
PspPI GGNCC 3 cut(s) 189, 296, 1117
PspPPI RGGWCCY 2 cut(s) 189, 1117
PstI CTGCAG 1 cut(s) 538
PstNI CAGNNNCTG 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 193
RseI CAYNNNNRTG 3 cut(s) 107, 560, 1209
SaqAI TTAA 5 cut(s) 12, 558, 615, 797, 1243
Sau3AI GATC 2 cut(s) 456, 475
Sau96I GGNCC 3 cut(s) 189, 296, 1117
SchI GAGTC 2 cut(s) 158, 834
ScrFI CCNGG 2 cut(s) 480, 845
SfaNI GCATC 6 cut(s) 265, 520, 557, 759, 1087, 1201
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 3 cut(s) 189, 296, 1117
SmiMI CAYNNNNRTG 3 cut(s) 107, 560, 1209
SmlI CTYRAG 5 cut(s) 704, 968, 1022, 1040, 1109
SmoI CTYRAG 5 cut(s) 704, 968, 1022, 1040, 1109
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 6 cut(s) 269, 335, 524, 793, 798, 1063
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 4 cut(s) 125, 151, 437, 1170
SspMI CTAG 2 cut(s) 131, 1053
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 478, 843
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 3 cut(s) 143, 219, 296
TaiI ACGT 2 cut(s) 379, 978
TasI AATT 6 cut(s) 269, 335, 524, 793, 798, 1063
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 4 cut(s) 395, 761, 955, 1141
Tru1I TTAA 5 cut(s) 12, 558, 615, 797, 1243
Tru9I TTAA 5 cut(s) 12, 558, 615, 797, 1243
TseFI GTSAC 2 cut(s) 482, 1081
TseI GCWGC 9 cut(s) 112, 115, 118, 121, 380, 533, 923, 944, 1030
Tsp45I GTSAC 2 cut(s) 482, 1081
TspDTI ATGAA 6 cut(s) 160, 297, 456, 537, 747, 1057
TspGWI ACGGA 3 cut(s) 541, 870, 907
Tth111I GACNNNGTC 1 cut(s) 193
VpaK11BI GGWCC 3 cut(s) 189, 296, 1117
VspI ATTAAT 1 cut(s) 12
XagI CCTNNNNNAGG 2 cut(s) 389, 1022
XapI RAATTY 3 cut(s) 335, 524, 793
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 2 cut(s) 131, 1053
Zsp2I ATGCAT 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.