Rh1CG061700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000830
Physical Location & Seq
Reverse (-)
12141364 .. 12142163
800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG061700.1

Sequence Viewer

Length: 627 bp
ATGGACAGCTTTCACTCTCCAAAGGGCCATCTTCAAGATGAGGATGTTGAGAAGAACATCAGCAGCAAAAAAAAATCTTCCAGAGGTGGCTGGAGTGCTGCCATCTTCATCATCTTTGTTGAAATGGCAGAGAGATTTTCTTACTTTGGCTTGGCTGGTAACCTCATCACCTACCTCACAAATGAACTCCATGAACCAATCCCTACAGCTGCCAAAAACGTCAACACTTGGATTGGTGTCTCATCTCTCCTCCCTATTCTCGGAGCCTTTATCGCTGATTCCTATCTCGGCAGATTCAACACCATCCTTGTCTCCTCCATCATATACTGCATGGCAATGAGTTTGTTAACCGTAACGGTATCAGCTATTCCACTGCATCTGCGGAAATTAATGTTCTTTGTGGCGCTTTACCTACTGTCACTAGGGCTATCGGGGCATAAACCATGTGTGCAGACGTTCGCGGCCGACCAGTTTTCTGAGGATTCGGCGGAGGAGAGAAAGGCGAAGAGCTCCTTCTTTAACTGGTGGTACTTAGGAATTGTAGTTGGTGGCTCTTCTGCCATTTTGGTAGTTATATATATCCAGGTACTTTTCCTCTTTCCATATTTTAGTGGTTACGTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

208

Amino Acids

23.16

Weight (kDa)

7.78

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 99 - 196 3.8e-19 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 461
AciI CCGC 3 cut(s) 382, 461, 488
AcoI YGGCCR 1 cut(s) 462
AfaI GTAC 2 cut(s) 530, 588
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 3 cut(s) 35, 122, 298
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 4 cut(s) 9, 209, 365, 510
AluI AGCT 4 cut(s) 9, 209, 365, 510
Alw21I GWGCWC 1 cut(s) 512
Alw26I GTCTC 2 cut(s) 244, 316
AoxI GGCC 2 cut(s) 25, 462
ApeKI GCWGC 3 cut(s) 63, 98, 209
AseI ATTAAT 1 cut(s) 389
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 160
BanII GRGCYC 1 cut(s) 512
Bbv12I GWGCWC 1 cut(s) 512
BbvI GCAGC 3 cut(s) 75, 85, 196
BccI CCATC 4 cut(s) 36, 110, 311, 326
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 244, 316
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 407
BisI GCNGC 4 cut(s) 64, 99, 210, 462
BlsI GCNGC 4 cut(s) 65, 100, 211, 463
Bme1390I CCNGG 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 1 cut(s) 385
BpmI CTGGAG 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 469, 527
Bse3DI GCAATG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 584
BseGI GGATG 2 cut(s) 49, 303
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 469, 527
BseRI GAGGAG 3 cut(s) 239, 304, 506
BseX3I CGGCCG 1 cut(s) 462
BseXI GCAGC 3 cut(s) 75, 85, 196
BsgI GTGCAG 1 cut(s) 470
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 465
BshFI GGCC 2 cut(s) 27, 464
BsiEI CGRYCG 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 2 cut(s) 244, 316
BsnI GGCC 2 cut(s) 27, 464
Bsp1286I GDGCHC 1 cut(s) 512
BspACI CCGC 3 cut(s) 382, 461, 488
BspANI GGCC 2 cut(s) 27, 464
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 265
BspQI GCTCTTC 2 cut(s) 500, 559
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 469, 527
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 3 cut(s) 352, 358, 417
Bst6I CTCTTC 2 cut(s) 500, 559
BstBAI YACGTR 1 cut(s) 619
BstDEI CTNAG 2 cut(s) 477, 532
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 2 cut(s) 49, 303
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstMAI GTCTC 2 cut(s) 244, 316
BstMCI CGRYCG 1 cut(s) 465
BstMWI GCNNNNNNNGC 2 cut(s) 272, 433
BstNI CCWGG 1 cut(s) 584
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 204
BstSNI TACGTA 1 cut(s) 619
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 3 cut(s) 75, 85, 196
BstZI CGGCCG 1 cut(s) 462
BsuRI GGCC 2 cut(s) 27, 464
BtsCI GGATG 2 cut(s) 49, 303
BtsI GCAGTG 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 371
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 529, 587
CviAII CATG 3 cut(s) 191, 331, 444
CviQI GTAC 2 cut(s) 529, 587
DdeI CTNAG 2 cut(s) 477, 532
EaeI YGGCCR 1 cut(s) 462
EagI CGGCCG 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 500, 559
EarI CTCTTC 2 cut(s) 500, 559
EciI GGCGGA 1 cut(s) 503
Ecl136II GAGCTC 1 cut(s) 510
EclXI CGGCCG 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 619
Eco24I GRGCYC 1 cut(s) 512
Eco52I CGGCCG 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 510
Eco91I GGTNACC 1 cut(s) 158
EcoICRI GAGCTC 1 cut(s) 510
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 512
FaeI CATG 3 cut(s) 194, 334, 447
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 3 cut(s) 190, 330, 443
Fnu4HI GCNGC 4 cut(s) 64, 99, 210, 462
FokI GGATG 2 cut(s) 56, 290
FriOI GRGCYC 1 cut(s) 512
Fsp4HI GCNGC 4 cut(s) 64, 99, 210, 462
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 405
GluI GCNGC 4 cut(s) 64, 99, 210, 462
GsuI CTGGAG 1 cut(s) 112
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 2 cut(s) 27, 464
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 194, 334, 447
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 2 cut(s) 223, 348
HindII GTYRAC 2 cut(s) 223, 348
HinfI GANTC 3 cut(s) 278, 294, 482
HpaI GTTAAC 1 cut(s) 348
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 223, 348
Hpy188I TCNGA 2 cut(s) 263, 478
Hpy188III TCNNGA 2 cut(s) 35, 81
Hpy8I GTNNAC 2 cut(s) 223, 348
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 3 cut(s) 352, 358, 417
HpyCH4IV ACGT 3 cut(s) 219, 455, 618
HpyCH4V TGCA 3 cut(s) 330, 376, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 272, 433
HpyF3I CTNAG 2 cut(s) 477, 532
HpySE526I ACGT 3 cut(s) 219, 455, 618
Hsp92II CATG 3 cut(s) 194, 334, 447
HspAI GCGC 1 cut(s) 404
KspAI GTTAAC 1 cut(s) 348
LguI GCTCTTC 2 cut(s) 500, 559
LmnI GCTCC 2 cut(s) 263, 515
LpnPI CCDG 7 cut(s) 76, 94, 141, 482, 508, 569, 596
Lsp1109I GCAGC 3 cut(s) 75, 85, 196
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 422
MaeII ACGT 3 cut(s) 219, 455, 618
MaeIII GTNAC 4 cut(s) 158, 352, 417, 614
MboII GAAGA 6 cut(s) 23, 64, 69, 97, 517, 546
MhlI GDGCHC 1 cut(s) 512
MluCI AATT 2 cut(s) 386, 537
MnlI CCTC 9 cut(s) 34, 77, 173, 185, 260, 325, 472, 484, 605
MseI TTAA 3 cut(s) 347, 389, 519
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 584
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 272, 433
NlaIII CATG 3 cut(s) 194, 334, 447
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 417
PciSI GCTCTTC 2 cut(s) 500, 559
PfeI GAWTC 3 cut(s) 278, 294, 482
PkrI GCNGC 4 cut(s) 65, 100, 211, 463
Ppu21I YACGTR 1 cut(s) 619
PshBI ATTAAT 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 512
Psp6I CCWGG 1 cut(s) 582
PspEI GGTNACC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 530, 588
RsaNI GTAC 2 cut(s) 529, 587
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 1 cut(s) 512
SapI GCTCTTC 2 cut(s) 500, 559
SaqAI TTAA 3 cut(s) 347, 389, 519
SatI GCNGC 4 cut(s) 64, 99, 210, 462
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 512
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 1 cut(s) 335
SnaBI TACGTA 1 cut(s) 619
Sse9I AATT 2 cut(s) 386, 537
SsiI CCGC 3 cut(s) 382, 461, 488
SspMI CTAG 1 cut(s) 422
SstI GAGCTC 1 cut(s) 512
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 3 cut(s) 352, 358, 417
TaiI ACGT 3 cut(s) 222, 458, 621
TasI AATT 2 cut(s) 386, 537
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 278, 294, 482
Tru1I TTAA 3 cut(s) 347, 389, 519
Tru9I TTAA 3 cut(s) 347, 389, 519
TscAI CASTG 1 cut(s) 378
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 3 cut(s) 63, 98, 209
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 3 cut(s) 97, 198, 207
TspRI CASTG 1 cut(s) 378
VspI ATTAAT 1 cut(s) 389
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.