Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000830

Physical Location & Seq

Genomic Coordinates Forward (+)

7099495 .. 7099887

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0042300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTGGTGCCTCAACCTCATTATATAGTGGAGAGGTTGAGGTGTATTCATGGTACAACCCTCCTTGAATATTTCTTCCTTCATTTTGGAATCAGACTCTGCTCCCCTTATCTCAGCCCTCAACCTTCCCAAATATATTCTGTAGATTGGACAGCAGCTCCTTTGATTTGGAAGATTCGCTCTTTGGCCGAGTCGTTTACCTCAATTAGCTGGCTTTGGACCAGCAGAAAAGCCAACCAGGCAGCCGACTTTGTCGCAGCCTTTGCTTCCAGGAGGATGTGTCCTGTTGATTGGGTCTCCAATCCACCTTCCTCCTTTTTAGCTTTGTTGTCAATTGATAGTTCTATCATCCTTTCCCAGGATTTTGTTCCTCCGGGTTTTGATGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

130

Amino Acids

14.71

Weight (kDa)

6.81

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	53 - 89	8e-06	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54450
fragaria_vesca	FvH4_7g02980 FvH4_7g03010 FvH4_7g03010 FvH4_7g03011 FvH4_7g03012 FvH4_7g03030
malus_domestica	MD02G1287700.v1.1 MD05G1342600.v1.1 MD07G1038600.v1.1 MD07G1038800.v1.1 MD07G1038900.v1.1 MD07G1039100.v1.1 MD07G1039200.v1.1 MD07G1039600.v1.1
prunus_persica	Prupe.2G034800_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035000_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035200_v2.0.a1 Prupe.2G035400_v2.0.a1
pyrus_communis	pycom02g24390 pycom02g24400 pycom05g31190 pycom07g02690 pycom07g02710 pycom07g02720 pycom07g02740 pycom10g26840
rosa_chinensis	RchiOBHm_Chr1g0324041 RchiOBHm_Chr1g0324051 RchiOBHm_Chr1g0324061 RchiOBHm_Chr1g0324071
rosa_laevigata	RLG00000030223 RLG00000030225 RLG00000030226 RLG00000030232 RLG00000030234
rosa_multiflora	Rmu_sc0001099.1_g000012 Rmu_sc0001227.1_g000006 Rmu_sc0001227.1_g000007 Rmu_sc0001227.1_g000018 Rmu_sc0001227.1_g000019 Rmu_sc0001227.1_g000033
rosa_roxburghii	Rroxscaffold_4G00325880 Rroxscaffold_4G00325910 Rroxscaffold_4G00325940 Rroxscaffold_4G00325950
rosa_rugosa	Rorug01G0042300 Rorug01G0042400 Rorug01G0042800 Rorug01G0043000
rosa_samantha	Rh1BG050300 Rh1BG050600 Rh1BG050700 Rh1BG050800 Rh1BG051000 Rh1CG061700 Rh1CG061900 Rh1CG062000 Rh1DG065900 Rh1DG066100 Rh1DG066200
rosa_wichuraiana	Rw1G005090 Rw1G005100 Rw1G005110 Rw1G005120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	186
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	3 cut(s)	237, 269, 357
AluBI	AGCT	3 cut(s)	158, 210, 323
AluI	AGCT	3 cut(s)	158, 210, 323
Alw26I	GTCTC	1 cut(s)	301
AlwNI	CAGNNNCTG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	155, 242, 257
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	7
BbvI	GCAGC	3 cut(s)	167, 254, 269
BciT130I	CCWGG	3 cut(s)	239, 271, 359
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	391
BfmI	CTRYAG	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	156, 243, 258
BlsI	GCNGC	3 cut(s)	157, 244, 259
Bme1390I	CCNGG	4 cut(s)	239, 271, 359, 375
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	4 cut(s)	239, 271, 359, 375
BpuMI	CCSGG	1 cut(s)	375
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 172, 265, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	239, 271, 359
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	2 cut(s)	282, 348
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	167, 254, 269
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	239, 271, 359
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	282, 348
BstMAI	GTCTC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 263
BstNI	CCWGG	3 cut(s)	239, 271, 359
BstSCI	CCNGG	4 cut(s)	237, 269, 357, 373
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	167, 254, 269
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	282, 348
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	50
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	356
EcoRII	CCWGG	3 cut(s)	237, 269, 357
FaeI	CATG	1 cut(s)	53
FaiI	YATR	4 cut(s)	24, 26, 51, 136
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	156, 243, 258
FokI	GGATG	2 cut(s)	289, 335
Fsp4HI	GCNGC	3 cut(s)	156, 243, 258
FspBI	CTAG	1 cut(s)	391
GluI	GCNGC	3 cut(s)	156, 243, 258
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	374
Hin1II	CATG	1 cut(s)	53
HinfI	GANTC	4 cut(s)	90, 96, 175, 191
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	89, 135, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 263
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	53
LmnI	GCTCC	2 cut(s)	107, 163
Lsp1109I	GCAGC	3 cut(s)	167, 254, 269
MaeI	CTAG	1 cut(s)	391
MboII	GAAGA	2 cut(s)	67, 184
MfeI	CAATTG	1 cut(s)	333
MluCI	AATT	2 cut(s)	204, 333
MlyI	GAGTC	2 cut(s)	90, 200
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	4 cut(s)	239, 271, 359, 375
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	3 cut(s)	239, 271, 359
MwoI	GCNNNNNNNGC	2 cut(s)	239, 263
NciI	CCSGG	1 cut(s)	375
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	90, 175
PflFI	GACNNNGTC	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	157, 244, 259
PleI	GAGTC	2 cut(s)	90, 199
PpsI	GAGTC	2 cut(s)	90, 199
Psp6I	CCWGG	3 cut(s)	237, 269, 357
PspGI	CCWGG	3 cut(s)	237, 269, 357
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SatI	GCNGC	3 cut(s)	156, 243, 258
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	2 cut(s)	90, 200
ScrFI	CCNGG	4 cut(s)	239, 271, 359, 375
SetI	ASST	9 cut(s)	19, 38, 44, 127, 160, 203, 212, 310, 325
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	2 cut(s)	204, 333
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	391
StyD4I	CCNGG	4 cut(s)	237, 269, 357, 373
TasI	AATT	2 cut(s)	204, 333
TfiI	GAWTC	2 cut(s)	90, 175
TseI	GCWGC	3 cut(s)	155, 242, 257
TspDTI	ATGAA	2 cut(s)	38, 71
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	356
XspI	CTAG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.