pycom07g02710

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000830
Physical Location & Seq
Reverse (-)
2262152 .. 2265922
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02710.2

Sequence Viewer

Length: 1230 bp
ATGAATATTGCTTCTACTGCACATGGAAAACCCAGTAGGGGTGGCTGGAATGCTGCTATTTTCATCATCTTGGTTGAGGTGGCCCAGCAGTTCGCATTCTATGGGTTGGCAAGTAACCTCATCATGTACCTCACAGATGTTTTGGACCAGCCCTTAGCCACGGCGGCTAAGAATGTCAACACCTGGCTTGGTGTTTCATCAGTCTTCCCTGTCGTCGGAGCCTTTCTTGCAGATTCATATTTTGGTCGGTTCAAAACCATCGTCTTCTCTGTCACCATCTATTTCCTGGGCATGGTTCTTTTGACTCTGTCCGTCTCAGTAATTCCTTCACAAAGTCGCCGAGCAGTGTTCTTTGTGGCGCTATACATTTTATCCGTGGCTCAAGGTGGGCAGAAGCCATGCGTGCAAACATTTGCAGCAGACCAGTTCGATGAGAACACGCCGGAAGAGATAAAGGTCAAGAGCTCATTCTTCAACTGGTGGTACTTGGGGTTGGTGTTTGGTGCCACTTCTGCCACACTAGGAGTTTTTTATCTCCAGGATAATGTTGGGTGGGGATTAGGGTTTGGAATATTGGCAGGGGTTTTGGTTTTGTCACTAGTATCGTTCTTGGTGGGAACTAAAAGGTACAGAAAGCAAAGGCCTCCAGGGAGCCCTTTTACTACGGTGGCACAAGTGATCGTTGCAGCAGCTCGGAAATGTCATATCATTGAGACACTCAATTGCGAGGGAGTTTACCATGGAGATGAGAAGGGTGAAGCCATGCTACAACGTCAGTCGCAGCCTCTAGATTTGGCTCGTACTAATCAACTCAGATGCTTGGACAAGGCAATGATCATAGACGAACAAGATGCATCAACGAAAACTAGAAACCCATGGAGGCTATGCTCTCTCAATCAAGTGGAAGAAGTGAAGCTCGTCCTTCGACTCATCCCCATATGGTTGAGTTGCCTAATGTTTGGTGTAATCCAAGCCCAACTTCACACCTTCTTCACCAAACAATGTAGCACAACCATCCGATCGATTGGTCCCCATTTCCAGGTTCCTGCGGCATCATTTCAAGGCCTCGTTGGCATTGCAATCCTAATCGTCGTTCCAATCTACGACAGGGTTTTTGTCCCAGTAGCCCGAAAATATACGGGACACCCCTCGGGTATTACTGTGCTACAAAGAATCGGCATTGGGCTCGTTCTATCCATACTCCTCATGGTTGTGTCGGCTCTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

410

Amino Acids

44.91

Weight (kDa)

9.3

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AciI CCGC 2 cut(s) 164, 1049
AfaI GTAC 4 cut(s) 128, 485, 629, 802
AfiI CCNNNNNNNGG 4 cut(s) 38, 215, 292, 1039
AgsI TTSAA 3 cut(s) 253, 475, 1061
AhlI ACTAGT 1 cut(s) 598
AjnI CCWGG 5 cut(s) 182, 285, 537, 646, 1038
AjuI GAANNNNNNNTTGG 2 cut(s) 963, 995
AluBI AGCT 3 cut(s) 465, 692, 916
AluI AGCT 3 cut(s) 465, 692, 916
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 319, 707
Ama87I CYCGRG 1 cut(s) 1150
AoxI GGCC 3 cut(s) 81, 641, 1063
ApeKI GCWGC 5 cut(s) 53, 416, 686, 689, 781
ArsI GACNNNNNNTTYG 4 cut(s) 246, 278, 1097, 1129
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 3 cut(s) 82, 145, 1028
AsuHPI GGTGA 3 cut(s) 265, 767, 985
AvaI CYCGRG 1 cut(s) 1150
AvaII GGWCC 2 cut(s) 145, 1028
BanI GGYRCC 1 cut(s) 503
BanII GRGCYC 3 cut(s) 467, 656, 1188
BarI GAAGNNNNNNTAC 2 cut(s) 750, 782
BbsI GAAGAC 2 cut(s) 196, 256
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 5 cut(s) 40, 428, 698, 701, 793
BccI CCATC 3 cut(s) 266, 284, 1022
BceAI ACGGC 1 cut(s) 177
BcgI CGANNNNNNTGC 4 cut(s) 833, 867, 1168, 1202
BciT130I CCWGG 5 cut(s) 184, 287, 539, 648, 1040
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 319, 707
BcuI ACTAGT 1 cut(s) 598
BfaI CTAG 5 cut(s) 521, 599, 788, 867, 1223
BfoI RGCGCY 1 cut(s) 362
BglI GCCNNNNNGGC 2 cut(s) 164, 1071
BisI GCNGC 7 cut(s) 54, 165, 417, 687, 690, 782, 1050
BlsI GCNGC 7 cut(s) 55, 166, 418, 688, 691, 783, 1051
Bme1390I CCNGG 5 cut(s) 184, 287, 539, 648, 1040
Bme18I GGWCC 2 cut(s) 145, 1028
BmeT110I CYCGRG 1 cut(s) 1150
BmgT120I GGNCC 3 cut(s) 82, 145, 1028
BmiI GGNNCC 5 cut(s) 220, 505, 653, 1030, 1044
BmrFI CCNGG 5 cut(s) 184, 287, 539, 648, 1040
BmrI ACTGGG 2 cut(s) 27, 1115
BmsI GCATC 4 cut(s) 806, 841, 863, 1061
BmuI ACTGGG 2 cut(s) 27, 1115
BpiI GAAGAC 2 cut(s) 196, 256
BpmI CTGGAG 2 cut(s) 521, 630
Bpu10I CCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 366
Bsa29I ATCGAT 1 cut(s) 1022
BsaJI CCNNGG 7 cut(s) 159, 286, 375, 647, 739, 875, 1149
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 215, 292, 1039
Bse1I ACTGG 4 cut(s) 33, 424, 482, 1121
Bse3DI GCAATG 2 cut(s) 837, 1074
BseBI CCWGG 5 cut(s) 184, 287, 539, 648, 1040
BseCI ATCGAT 1 cut(s) 1022
BseDI CCNNGG 7 cut(s) 159, 286, 375, 647, 739, 875, 1149
BseGI GGATG 2 cut(s) 930, 1014
BseLI CCNNNNNNNGG 4 cut(s) 38, 215, 292, 1039
BseMI GCAATG 2 cut(s) 837, 1074
BseMII CTCAG 2 cut(s) 330, 826
BseNI ACTGG 4 cut(s) 33, 424, 482, 1121
BseRI GAGGAG 1 cut(s) 1193
BseXI GCAGC 5 cut(s) 40, 428, 698, 701, 793
BseYI CCCAGC 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 1022
BshFI GGCC 3 cut(s) 83, 643, 1065
BshNI GGYRCC 1 cut(s) 503
BshVI ATCGAT 1 cut(s) 1022
BsiEI CGRYCG 1 cut(s) 1022
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 3 cut(s) 1014, 1103, 1155
BslI CCNNNNNNNGG 4 cut(s) 38, 215, 292, 1039
BsmAI GTCTC 2 cut(s) 319, 707
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 3 cut(s) 1014, 1103, 1155
BsmI GAATGC 2 cut(s) 55, 95
BsnI GGCC 3 cut(s) 83, 643, 1065
BsoBI CYCGRG 1 cut(s) 1150
Bsp1286I GDGCHC 3 cut(s) 467, 656, 1188
Bsp143I GATC 3 cut(s) 678, 834, 1019
Bsp19I CCATGG 2 cut(s) 739, 875
BspACI CCGC 2 cut(s) 164, 1049
BspANI GGCC 3 cut(s) 83, 643, 1065
BspCNI CTCAG 2 cut(s) 329, 825
BspDI ATCGAT 1 cut(s) 1022
BspLI GGNNCC 5 cut(s) 220, 505, 653, 1030, 1044
BspT107I GGYRCC 1 cut(s) 503
BsrDI GCAATG 2 cut(s) 837, 1074
BsrI ACTGG 4 cut(s) 33, 424, 482, 1121
BssECI CCNNGG 7 cut(s) 159, 286, 375, 647, 739, 875, 1149
BssMI GATC 3 cut(s) 678, 834, 1019
BssT1I CCWWGG 2 cut(s) 739, 875
Bst2UI CCWGG 5 cut(s) 184, 287, 539, 648, 1040
Bst4CI ACNGT 2 cut(s) 667, 1162
Bst6I CTCTTC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 4 cut(s) 154, 168, 316, 812
BstDSI CCRYGG 4 cut(s) 159, 375, 739, 875
BstF5I GGATG 2 cut(s) 930, 1014
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 3 cut(s) 681, 837, 1022
BstMAI GTCTC 2 cut(s) 319, 707
BstMBI GATC 3 cut(s) 678, 834, 1019
BstMCI CGRYCG 1 cut(s) 1022
BstMWI GCNNNNNNNGC 6 cut(s) 17, 164, 227, 403, 512, 1071
BstNI CCWGG 5 cut(s) 184, 287, 539, 648, 1040
BstSCI CCNGG 5 cut(s) 182, 285, 537, 646, 1038
BstV1I GCAGC 5 cut(s) 40, 428, 698, 701, 793
BstV2I GAAGAC 2 cut(s) 196, 256
Bsu15I ATCGAT 1 cut(s) 1022
BsuRI GGCC 3 cut(s) 83, 643, 1065
BsuTUI ATCGAT 1 cut(s) 1022
BtgI CCRYGG 4 cut(s) 159, 375, 739, 875
BtsCI GGATG 2 cut(s) 930, 1014
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 3 cut(s) 82, 145, 1028
ClaI ATCGAT 1 cut(s) 1022
Csp6I GTAC 4 cut(s) 127, 484, 628, 801
CviAII CATG 8 cut(s) 23, 124, 292, 399, 740, 763, 876, 1207
CviQI GTAC 4 cut(s) 127, 484, 628, 801
DdeI CTNAG 4 cut(s) 154, 168, 316, 812
DpnI GATC 3 cut(s) 680, 836, 1021
DpnII GATC 3 cut(s) 678, 834, 1019
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 739, 875
Eco147I AGGCCT 2 cut(s) 643, 1065
Eco24I GRGCYC 3 cut(s) 467, 656, 1188
Eco47I GGWCC 2 cut(s) 145, 1028
Eco53kI GAGCTC 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 1150
EcoICRI GAGCTC 1 cut(s) 465
EcoRII CCWGG 5 cut(s) 182, 285, 537, 646, 1038
EcoT14I CCWWGG 2 cut(s) 739, 875
EcoT22I ATGCAT 1 cut(s) 856
EcoT38I GRGCYC 3 cut(s) 467, 656, 1188
ErhI CCWWGG 2 cut(s) 739, 875
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 8 cut(s) 26, 127, 295, 402, 743, 766, 879, 1210
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 3 cut(s) 1014, 1103, 1155
FatI CATG 8 cut(s) 22, 123, 291, 398, 739, 762, 875, 1206
FauNDI CATATG 1 cut(s) 938
FbaI TGATCA 1 cut(s) 834
Fnu4HI GCNGC 7 cut(s) 54, 165, 417, 687, 690, 782, 1050
FokI GGATG 2 cut(s) 917, 1001
FriOI GRGCYC 3 cut(s) 467, 656, 1188
Fsp4HI GCNGC 7 cut(s) 54, 165, 417, 687, 690, 782, 1050
FspBI CTAG 5 cut(s) 521, 599, 788, 867, 1223
GlaI GCGC 1 cut(s) 360
GluI GCNGC 7 cut(s) 54, 165, 417, 687, 690, 782, 1050
GsaI CCCAGC 1 cut(s) 88
GsuI CTGGAG 2 cut(s) 521, 630
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 3 cut(s) 83, 643, 1065
HapII CCGG 1 cut(s) 443
HhaI GCGC 1 cut(s) 361
Hin1II CATG 8 cut(s) 26, 127, 295, 402, 743, 766, 879, 1210
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 4 cut(s) 233, 304, 927, 1173
HpaII CCGG 1 cut(s) 443
HphI GGTGA 3 cut(s) 265, 767, 985
Hpy166II GTNNAC 2 cut(s) 178, 736
Hpy188I TCNGA 4 cut(s) 218, 696, 815, 1019
Hpy188III TCNNGA 2 cut(s) 460, 788
Hpy8I GTNNAC 2 cut(s) 178, 736
Hpy99I CGWCG 2 cut(s) 218, 1094
HpyAV CCTTC 4 cut(s) 336, 745, 932, 997
HpyCH4III ACNGT 2 cut(s) 667, 1162
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 7 cut(s) 20, 230, 406, 416, 686, 854, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 164, 227, 403, 512, 1071
HpyF3I CTNAG 4 cut(s) 154, 168, 316, 812
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 8 cut(s) 26, 127, 295, 402, 743, 766, 879, 1210
HspAI GCGC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 3 cut(s) 678, 834, 1019
LmnI GCTCC 2 cut(s) 218, 651
Lsp1109I GCAGC 5 cut(s) 40, 428, 698, 701, 793
LweI GCATC 4 cut(s) 806, 841, 863, 1061
MaeI CTAG 5 cut(s) 521, 599, 788, 867, 1223
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 3 cut(s) 113, 271, 594
MalI GATC 3 cut(s) 680, 836, 1021
MboI GATC 3 cut(s) 678, 834, 1019
MboII GAAGA 6 cut(s) 196, 256, 458, 463, 917, 982
MfeI CAATTG 1 cut(s) 721
MhlI GDGCHC 3 cut(s) 467, 656, 1188
MluCI AATT 2 cut(s) 321, 721
MlyI GAGTC 2 cut(s) 298, 921
MmeI TCCRAC 1 cut(s) 196
Mph1103I ATGCAT 1 cut(s) 856
MslI CAYNNNNRTG 2 cut(s) 744, 1211
MspI CCGG 1 cut(s) 443
MspR9I CCNGG 5 cut(s) 184, 287, 539, 648, 1040
MunI CAATTG 1 cut(s) 721
Mva1269I GAATGC 2 cut(s) 55, 95
MvaI CCWGG 5 cut(s) 184, 287, 539, 648, 1040
MwoI GCNNNNNNNGC 6 cut(s) 17, 164, 227, 403, 512, 1071
NcoI CCATGG 2 cut(s) 739, 875
NdeI CATATG 1 cut(s) 938
NdeII GATC 3 cut(s) 678, 834, 1019
NlaIII CATG 8 cut(s) 26, 127, 295, 402, 743, 766, 879, 1210
NlaIV GGNNCC 5 cut(s) 220, 505, 653, 1030, 1044
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 2 cut(s) 271, 594
NsiI ATGCAT 1 cut(s) 856
PceI AGGCCT 2 cut(s) 643, 1065
PctI GAATGC 2 cut(s) 55, 95
PfeI GAWTC 2 cut(s) 233, 1173
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 7 cut(s) 55, 166, 418, 688, 691, 783, 1051
Ple19I CGATCG 1 cut(s) 1022
PleI GAGTC 2 cut(s) 298, 921
PpsI GAGTC 2 cut(s) 298, 921
Psp124BI GAGCTC 1 cut(s) 467
Psp6I CCWGG 5 cut(s) 182, 285, 537, 646, 1038
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 5 cut(s) 182, 285, 537, 646, 1038
PspN4I GGNNCC 5 cut(s) 220, 505, 653, 1030, 1044
PspPI GGNCC 3 cut(s) 82, 145, 1028
PsyI GACNNNGTC 1 cut(s) 307
PvuI CGATCG 1 cut(s) 1022
RsaI GTAC 4 cut(s) 128, 485, 629, 802
RsaNI GTAC 4 cut(s) 127, 484, 628, 801
RseI CAYNNNNRTG 2 cut(s) 744, 1211
SacI GAGCTC 1 cut(s) 467
SatI GCNGC 7 cut(s) 54, 165, 417, 687, 690, 782, 1050
Sau3AI GATC 3 cut(s) 678, 834, 1019
Sau96I GGNCC 3 cut(s) 82, 145, 1028
SchI GAGTC 2 cut(s) 298, 921
ScrFI CCNGG 5 cut(s) 184, 287, 539, 648, 1040
SduI GDGCHC 3 cut(s) 467, 656, 1188
SfaNI GCATC 4 cut(s) 806, 841, 863, 1061
SinI GGWCC 2 cut(s) 145, 1028
SmiMI CAYNNNNRTG 2 cut(s) 744, 1211
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
SpeI ACTAGT 1 cut(s) 598
Sse9I AATT 2 cut(s) 321, 721
SseBI AGGCCT 2 cut(s) 643, 1065
SsiI CCGC 2 cut(s) 164, 1049
SspI AATATT 2 cut(s) 7, 573
SspMI CTAG 5 cut(s) 521, 599, 788, 867, 1223
SstI GAGCTC 1 cut(s) 467
StuI AGGCCT 2 cut(s) 643, 1065
StyD4I CCNGG 5 cut(s) 182, 285, 537, 646, 1038
StyI CCWWGG 2 cut(s) 739, 875
TaaI ACNGT 2 cut(s) 667, 1162
TaiI ACGT 1 cut(s) 775
TaqI TCGA 3 cut(s) 429, 925, 1022
TasI AATT 2 cut(s) 321, 721
TauI GCSGC 2 cut(s) 167, 1052
TfiI GAWTC 2 cut(s) 233, 1173
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 2 cut(s) 271, 594
TseI GCWGC 5 cut(s) 53, 416, 686, 689, 781
Tsp45I GTSAC 2 cut(s) 271, 594
TspDTI ATGAA 4 cut(s) 17, 52, 186, 225
TspGWI ACGGA 2 cut(s) 301, 364
TspRI CASTG 1 cut(s) 351
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 145, 1028
XbaI TCTAGA 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 3 cut(s) 283, 545, 1204
XspI CTAG 5 cut(s) 521, 599, 788, 867, 1223
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.