pycom07g02720

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000830
Physical Location & Seq
Reverse (-)
2276642 .. 2277505
864 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02720.1

Sequence Viewer

Length: 864 bp
ATGATCATAGACGAACTAGATGCATCAACGATACCTAGAAATCCATGGAGGCTATGCTCTCTCAATCAAGTGGAAGAAGTGAAGCTCGTCCTCCGACTCATCCCCCTATGGTTGAGTTGCCTAATGTTTGGCGTAATCGAAGCCCAACTTCACACCTTCTTCACCAAACAAAGTAGCACAACCATCCGATCGATCGGTCCCCATTTCCAGGTTCCTGCGGCATCACTTCAAGGCCTCGTTGGCATTGCAATCCTAATCGCCGTTCCAATCTACGACCGGTTTTTTGTCCCAATAGCCCGAAAATATACGGGACACCCCTCGGGTATTACTGTGCTACAAAGAATCGGCATTGGGCTAGTTCTATCCATACTTGTTATGGTTGTGTCGGCTCTAGTAGAGGCCAAAAGGCTCAACATTGCAAAAGACTACAATCTCATTGATAAACCTAAAGCAGTAGTACCAATGAGGGTATGGTGGTTACTCCCACAATACTTGATTCTTGGCCTCGCAAATGCATTCGCCACGGTTGGACTTCAAGAATTGTTCTACGATGAAATGCCGGAGCAAATGAGAAGCATCGGAGCGGCAACGTCTATGAGTGTTGTAGGAGTTGGCAGCTTCATTAGCAATTGGATTATATCTGTTGCGGAGTTAATTACCTCAAGAAATGGTGACAAATGGCTTGGTGACAATATCAATCGGGCTCACCTCGATTACTTCTATTGGGTGCTGGCAGTTTTGAGCACATTAAATTTGTGCGTTTATGTGTTAATTGCAAATGCTTTTGTGTACAAAAAGGTCGGAAGAGAAGTCAAAGTGAAGACGGATTTGAGCTTTGCAAACAACCATGGTGGAGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

288

Amino Acids

31.97

Weight (kDa)

8.93

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 7 - 222 5e-45 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 584
AciI CCGC 3 cut(s) 218, 584, 647
AcsI RAATTY 1 cut(s) 751
AfaI GTAC 2 cut(s) 459, 791
AfiI CCNNNNNNNGG 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 276
AgsI TTSAA 2 cut(s) 230, 536
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 3 cut(s) 85, 618, 834
AluI AGCT 3 cut(s) 85, 618, 834
Alw21I GWGCWC 1 cut(s) 746
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 3 cut(s) 232, 399, 502
ApeKI GCWGC 1 cut(s) 615
ApoI RAATTY 1 cut(s) 751
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AsiGI ACCGGT 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 4 cut(s) 154, 683, 698, 698
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 706
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 1 cut(s) 627
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 3
BfaI CTAG 4 cut(s) 17, 36, 356, 392
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 3 cut(s) 219, 585, 616
BlsI GCNGC 3 cut(s) 220, 586, 617
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 199, 213
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 4 cut(s) 10, 32, 230, 585
BpiI GAAGAC 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 646
Bsa29I ATCGAT 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 44, 318, 522, 847
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 243, 414
BseBI CCWGG 1 cut(s) 209
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 4 cut(s) 44, 318, 522, 847
BseGI GGATG 2 cut(s) 99, 183
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 2 cut(s) 243, 414
BseXI GCAGC 1 cut(s) 627
Bsh1285I CGRYCG 3 cut(s) 191, 195, 277
BshFI GGCC 3 cut(s) 234, 401, 504
BshTI ACCGGT 1 cut(s) 276
BshVI ATCGAT 1 cut(s) 191
BsiEI CGRYCG 3 cut(s) 191, 195, 277
BsiHKAI GWGCWC 1 cut(s) 746
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 2 cut(s) 277, 560
BslFI GGGAC 3 cut(s) 183, 272, 324
BslI CCNNNNNNNGG 1 cut(s) 208
BsmFI GGGAC 3 cut(s) 183, 272, 324
BsmI GAATGC 1 cut(s) 515
BsnI GGCC 3 cut(s) 234, 401, 504
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 706, 746
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 3 cut(s) 3, 188, 192
Bsp19I CCATGG 2 cut(s) 44, 847
BspACI CCGC 3 cut(s) 218, 584, 647
BspANI GGCC 3 cut(s) 234, 401, 504
BspDI ATCGAT 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 199, 213
BsrBI CCGCTC 1 cut(s) 584
BsrDI GCAATG 2 cut(s) 243, 414
BsrFI RCCGGY 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 789
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 44, 318, 522, 847
BssMI GATC 3 cut(s) 3, 188, 192
BssT1I CCWWGG 2 cut(s) 44, 847
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 331, 526
Bst6I CTCTTC 1 cut(s) 799
BstAUI TGTACA 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 732
BstDSI CCRYGG 3 cut(s) 44, 522, 847
BstF5I GGATG 2 cut(s) 99, 183
BstKTI GATC 3 cut(s) 6, 191, 195
BstMBI GATC 3 cut(s) 3, 188, 192
BstMCI CGRYCG 3 cut(s) 191, 195, 277
BstMWI GCNNNNNNNGC 2 cut(s) 240, 624
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 627
BstV2I GAAGAC 1 cut(s) 827
Bsu15I ATCGAT 1 cut(s) 191
BsuRI GGCC 3 cut(s) 234, 401, 504
BsuTUI ATCGAT 1 cut(s) 191
BtgI CCRYGG 3 cut(s) 44, 522, 847
BtsCI GGATG 2 cut(s) 99, 183
Cac8I GCNNGC 1 cut(s) 732
Cfr10I RCCGGY 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 191
Csp6I GTAC 2 cut(s) 458, 790
CspAI ACCGGT 1 cut(s) 276
CspCI CAANNNNNGTGG 3 cut(s) 474, 509, 832
CviAII CATG 2 cut(s) 45, 848
CviQI GTAC 2 cut(s) 458, 790
DpnI GATC 3 cut(s) 5, 190, 194
DpnII GATC 3 cut(s) 3, 188, 192
Eam1104I CTCTTC 1 cut(s) 799
EarI CTCTTC 1 cut(s) 799
Eco130I CCWWGG 2 cut(s) 44, 847
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 44, 847
EcoT22I ATGCAT 2 cut(s) 25, 517
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 44, 847
FaeI CATG 2 cut(s) 48, 851
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 3 cut(s) 183, 272, 324
FatI CATG 2 cut(s) 44, 847
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 219, 585, 616
FokI GGATG 2 cut(s) 86, 170
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 3 cut(s) 219, 585, 616
FspBI CTAG 4 cut(s) 17, 36, 356, 392
GluI GCNGC 3 cut(s) 219, 585, 616
HaeIII GGCC 3 cut(s) 234, 401, 504
HapII CCGG 2 cut(s) 277, 560
Hin1II CATG 2 cut(s) 48, 851
HinfI GANTC 3 cut(s) 96, 342, 496
HpaII CCGG 2 cut(s) 277, 560
HphI GGTGA 4 cut(s) 154, 683, 698, 698
Hpy166II GTNNAC 1 cut(s) 790
Hpy188I TCNGA 4 cut(s) 95, 188, 581, 803
Hpy188III TCNNGA 2 cut(s) 536, 663
Hpy8I GTNNAC 1 cut(s) 790
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 331, 526
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 6 cut(s) 23, 248, 419, 515, 776, 839
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 624
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 2 cut(s) 48, 851
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 188, 192
LmnI GCTCC 2 cut(s) 562, 581
LpnPI CCDG 6 cut(s) 194, 221, 228, 290, 573, 716
Lsp1109I GCAGC 1 cut(s) 627
LweI GCATC 4 cut(s) 10, 32, 230, 585
MaeI CTAG 4 cut(s) 17, 36, 356, 392
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 3 cut(s) 477, 671, 686
MalI GATC 3 cut(s) 5, 190, 194
MbiI CCGCTC 1 cut(s) 584
MboI GATC 3 cut(s) 3, 188, 192
MboII GAAGA 4 cut(s) 86, 151, 816, 832
MfeI CAATTG 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 706, 746
MluCI AATT 5 cut(s) 539, 628, 654, 751, 771
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 118, 508, 781
MnlI CCTC 9 cut(s) 42, 101, 245, 328, 391, 459, 515, 670, 719
Mph1103I ATGCAT 2 cut(s) 25, 517
MseI TTAA 3 cut(s) 653, 749, 770
MspI CCGG 2 cut(s) 277, 560
MspR9I CCNGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 628
Mva1269I GAATGC 1 cut(s) 515
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 240, 624
NcoI CCATGG 2 cut(s) 44, 847
NdeII GATC 3 cut(s) 3, 188, 192
NlaIII CATG 2 cut(s) 48, 851
NlaIV GGNNCC 2 cut(s) 199, 213
NmuCI GTSAC 2 cut(s) 671, 686
NsiI ATGCAT 2 cut(s) 25, 517
PceI AGGCCT 1 cut(s) 234
PctI GAATGC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 342, 496
PinAI ACCGGT 1 cut(s) 276
PkrI GCNGC 3 cut(s) 220, 586, 617
Ple19I CGATCG 2 cut(s) 191, 195
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 199, 213
PspPI GGNCC 1 cut(s) 197
PvuI CGATCG 2 cut(s) 191, 195
RsaI GTAC 2 cut(s) 459, 791
RsaNI GTAC 2 cut(s) 458, 790
SaqAI TTAA 3 cut(s) 653, 749, 770
SatI GCNGC 3 cut(s) 219, 585, 616
Sau3AI GATC 3 cut(s) 3, 188, 192
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 2 cut(s) 706, 746
SfaNI GCATC 4 cut(s) 10, 32, 230, 585
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse9I AATT 5 cut(s) 539, 628, 654, 751, 771
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 3 cut(s) 218, 584, 647
SspMI CTAG 4 cut(s) 17, 36, 356, 392
StuI AGGCCT 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 2 cut(s) 44, 847
TaaI ACNGT 2 cut(s) 331, 526
TaiI ACGT 1 cut(s) 593
TaqI TCGA 3 cut(s) 138, 191, 711
TaqII GACCGA 1 cut(s) 185
TasI AATT 5 cut(s) 539, 628, 654, 751, 771
TatI WGTACW 1 cut(s) 789
TauI GCSGC 2 cut(s) 221, 587
TfiI GAWTC 2 cut(s) 342, 496
Tru1I TTAA 3 cut(s) 653, 749, 770
Tru9I TTAA 3 cut(s) 653, 749, 770
TseFI GTSAC 2 cut(s) 671, 686
TseI GCWGC 1 cut(s) 615
Tsp45I GTSAC 2 cut(s) 671, 686
TspDTI ATGAA 2 cut(s) 567, 610
TspGWI ACGGA 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 751
XcmI CCANNNNNNNNNTGG 2 cut(s) 373, 468
XspI CTAG 4 cut(s) 17, 36, 356, 392
Zsp2I ATGCAT 2 cut(s) 25, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.